>gb|BT009374.1| Triticum aestivum clone wlm96.pk029.g10:fis, full insert mRNA
           sequence
          Length = 1635

 Score =  238 bits (120), Expect = 4e-60
 Identities = 141/149 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctacagcagtaaaaattgcaagaattgtcaatgcttcagctcaagggaacaaaccanag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 826 cctacagcagtaaaaattgcaagaattgtcaatgcttcagctcaagggaacaaaccaaag 885

                                                                       
Query: 61  ctcggcaagatcagcataactgataaggattncagcacttcagctcccgctccagctaaa 120
           |||||||||||||||||||  |||||||||| |||||| |||||||| ||| ||||||||
Sbjct: 886 ctcggcaagatcagcataatagataaggattccagcacgtcagctcctgctgcagctaaa 945

                                        
Query: 121 tcttcaagaaagaacaagnggaagcccga 149
           |||||||||||||||||| ||||||||||
Sbjct: 946 tcttcaagaaagaacaagtggaagcccga 974

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 97.6 bits (49), Expect = 9e-18
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                            
Query: 1        cctacagcagtaaaaattgcaagaattgtcaatgcttcagctcaagggaacaaaccanag 60
                |||||||| ||||||||||||||||||||||||| ||||||||||||||  ||| || ||
Sbjct: 20032153 cctacagctgtaaaaattgcaagaattgtcaatggttcagctcaagggagtaaatcaaag 20032212

                                                                            
Query: 61       ctcggcaagatcagcataactgataaggattncagcacttcagctcccgctccagctaaa 120
                 | |||||||||||||||   | |||||| |  |||  | |  || | ||||||| ||||
Sbjct: 20032213 attggcaagatcagcatagtgggtaaggactctagcgatccttcttctgctccagttaaa 20032272

                                          
Query: 121      tcttcaagaaagaacaagnggaagcc 146
                ||||||| |||||||||| |||||||
Sbjct: 20032273 tcttcaaaaaagaacaagtggaagcc 20032298

>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0014M17
          Length = 156778

 Score = 97.6 bits (49), Expect = 9e-18
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      cctacagcagtaaaaattgcaagaattgtcaatgcttcagctcaagggaacaaaccanag 60
              |||||||| ||||||||||||||||||||||||| ||||||||||||||  ||| || ||
Sbjct: 136274 cctacagctgtaaaaattgcaagaattgtcaatggttcagctcaagggagtaaatcaaag 136333

                                                                          
Query: 61     ctcggcaagatcagcataactgataaggattncagcacttcagctcccgctccagctaaa 120
               | |||||||||||||||   | |||||| |  |||  | |  || | ||||||| ||||
Sbjct: 136334 attggcaagatcagcatagtgggtaaggactctagcgatccttcttctgctccagttaaa 136393

                                        
Query: 121    tcttcaagaaagaacaagnggaagcc 146
              ||||||| |||||||||| |||||||
Sbjct: 136394 tcttcaaaaaagaacaagtggaagcc 136419

>dbj|AK059666.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F01, full
           insert sequence
          Length = 1335

 Score = 97.6 bits (49), Expect = 9e-18
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctacagcagtaaaaattgcaagaattgtcaatgcttcagctcaagggaacaaaccanag 60
           |||||||| ||||||||||||||||||||||||| ||||||||||||||  ||| || ||
Sbjct: 579 cctacagctgtaaaaattgcaagaattgtcaatggttcagctcaagggagtaaatcaaag 638

                                                                       
Query: 61  ctcggcaagatcagcataactgataaggattncagcacttcagctcccgctccagctaaa 120
            | |||||||||||||||   | |||||| |  |||  | |  || | ||||||| ||||
Sbjct: 639 attggcaagatcagcatagtgggtaaggactctagcgatccttcttctgctccagttaaa 698

                                     
Query: 121 tcttcaagaaagaacaagnggaagcc 146
           ||||||| |||||||||| |||||||
Sbjct: 699 tcttcaaaaaagaacaagtggaagcc 724

>gb|AY110231.1| Zea mays CL852_1 mRNA sequence
          Length = 1931

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 100  tcagctcccgctccagctaaatcttc 125
            |||||||| |||||||||||||||||
Sbjct: 1413 tcagctccggctccagctaaatcttc 1438

>ref|XM_420305.1| PREDICTED: Gallus gallus similar to transcriptional regulator ATRX
            isoform 2; DNA dependent ATPase and helicase; Zinc finger
            helicase; X-linked nuclear protein; helicase 2, X-linked;
            RAD54 (Saccharomyces cerevisiae); alpha
            thalassemia/mental retardation syndrome X-linked (...
            (LOC422331), mRNA
          Length = 7352

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  aaatcttcaagaaagaacaag 138
            |||||||||||||||||||||
Sbjct: 3085 aaatcttcaagaaagaacaag 3105

>gb|AC007883.3| Homo sapiens BAC clone RP11-508L23 from 2, complete sequence
          Length = 113189

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aaatcttcaagaaagaacaa 137
             ||||||||||||||||||||
Sbjct: 53783 aaatcttcaagaaagaacaa 53802

>ref|NM_123649.1| Arabidopsis thaliana protein binding / zinc ion binding AT5G42840
            mRNA, complete cds
          Length = 2016

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   ttgcaagaattgtcaatgc 35
            |||||||||||||||||||
Sbjct: 1857 ttgcaagaattgtcaatgc 1875

>ref|NG_002432.1| Homo sapiens major histocompatibility complex, class II, DR51 haplotype
             (DR51) on chromosome 6
          Length = 137374

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    aaaattgcaagaattgtca 31
             |||||||||||||||||||
Sbjct: 59421 aaaattgcaagaattgtca 59403

>gb|AC154788.2| Mus musculus BAC clone RP24-470E2 from chromosome 13, complete sequence
          Length = 158761

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 117   taaatcttcaagaaagaac 135
             |||||||||||||||||||
Sbjct: 83897 taaatcttcaagaaagaac 83915

>gb|AC186169.1| Ornithorhynchus anatinus chromosome UNK clone OABb-2K17, complete
             sequence
          Length = 117478

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 95    gcacttcagctcccgctcc 113
             |||||||||||||||||||
Sbjct: 71366 gcacttcagctcccgctcc 71384

>emb|CR450685.13| Zebrafish DNA sequence from clone DKEY-83K24 in linkage group 8, complete
              sequence
          Length = 195473

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 6      agcagtaaaaattgcaagaattgtcaa 32
              ||||||||||| ||||| |||||||||
Sbjct: 117734 agcagtaaaaaatgcaataattgtcaa 117760

>gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome 5, complete sequence
          Length = 206926

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     tacagcagtaaaaattgca 21
             |||||||||||||||||||
Sbjct: 34922 tacagcagtaaaaattgca 34904

>ref|XM_719626.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04425)
           partial mRNA
          Length = 951

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   cagtaaaaattgcaagaat 26
           |||||||||||||||||||
Sbjct: 522 cagtaaaaattgcaagaat 540

>ref|XM_720270.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04980)
           partial mRNA
          Length = 1101

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   cagtaaaaattgcaagaat 26
           |||||||||||||||||||
Sbjct: 621 cagtaaaaattgcaagaat 639

>ref|XM_725512.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02689)
           partial mRNA
          Length = 1203

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   cagtaaaaattgcaagaat 26
           |||||||||||||||||||
Sbjct: 723 cagtaaaaattgcaagaat 741

>emb|AL713966.7| Human DNA sequence from clone XXbac-161M6 on chromosome 6 contains the
             HLA-DRB5 gene for major histocompatibility complex, class
             II, DR beta 5, the HLA-DRB6 pseudogene for major
             histocompatibility complex, class II, DR beta 6, the
             HLA-DRB1 gene for major histocompatibility complex, class
             II, DR beta 1 and one CpG island, complete sequence
          Length = 124047

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    aaaattgcaagaattgtca 31
             |||||||||||||||||||
Sbjct: 46094 aaaattgcaagaattgtca 46076

>emb|AL159977.10| Human DNA sequence from clone RP11-428O18 on chromosome 13 Contains the
             RPL21 gene for ribosomal protein L21 (60S ribosomal
             protein L21, L21), a novel gene for a Ras family protein
             similar to 1110065D03RIK, a novel gene, the 5' end of
             novel gene and two CpG islands, complete sequence
          Length = 173965

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     cagtaaaaattgcaagaat 26
             |||||||||||||||||||
Sbjct: 70327 cagtaaaaattgcaagaat 70345

>emb|AL022241.2|HS936P19 Human DNA sequence from clone RP5-936P19 on chromosome 1q24-25,
             complete sequence
          Length = 101046

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   cagctaaatcttcaagaaa 131
             |||||||||||||||||||
Sbjct: 83688 cagctaaatcttcaagaaa 83706

>emb|CR382301.12| Zebrafish DNA sequence from clone CH211-257P1 in linkage group 14,
             complete sequence
          Length = 102001

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    tgtcaatgcttcagctcaa 45
             |||||||||||||||||||
Sbjct: 66479 tgtcaatgcttcagctcaa 66497

>ref|NM_204248.1| Gallus gallus SMAD, mothers against DPP homolog 6 (Drosophila)
           (SMAD6), mRNA
          Length = 1967

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 98  cttcagctcccgctccagc 116
           |||||||||||||||||||
Sbjct: 627 cttcagctcccgctccagc 609

>gb|AF165889.1| Gallus gallus inhibitory protein SMAD6 (SMAD6) mRNA, complete cds
          Length = 1967

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 98  cttcagctcccgctccagc 116
           |||||||||||||||||||
Sbjct: 627 cttcagctcccgctccagc 609

>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2
          Length = 79976

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   ttgcaagaattgtcaatgc 35
            |||||||||||||||||||
Sbjct: 9936 ttgcaagaattgtcaatgc 9954

>emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in linkage group 8
             Contains part of a novel gene for a protein similar to
             human FLJ12550, the pim1 gene for pim-1 oncogene (proviral
             integration site 1), part of a novel gene for a protein
             similar to vertebrate UDP-galactose transporters, a novel
             gene for a protein similar to vertebrate caldesmon 1
             (CALD1) and a CpG island, complete sequence
          Length = 140984

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 6     agcagtaaaaattgcaagaattgtcaa 32
             ||||||||||| ||||| |||||||||
Sbjct: 66201 agcagtaaaaaatgcaataattgtcaa 66227


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,216,200
Number of Sequences: 3902068
Number of extensions: 1216200
Number of successful extensions: 88716
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88647
Number of HSP's gapped (non-prelim): 69
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)