ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUM... 30 5.5
2ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUM... 29 7.2
3PTMS_HUMAN (P20962) Parathymosin 29 7.2
4YAD7_YEAST (P39728) Hypothetical 30.5 kDa protein in PYK1-SNC1 i... 29 9.3

>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 640

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +2

Query: 125 SNGADESAEPASDGAQDEHVGEQMDTDKDDPSQA*EVS 238
           +NG+D+ A+P++  AQ++     +D+D++D S   +VS
Sbjct: 567 TNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVS 604



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>ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 638

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = +2

Query: 125 SNGADESAEPASDGAQDEHVGEQMDTDKDDPSQA*EVS 238
           +NG+D+ A+P++  AQ++     +D+D++ PS + + S
Sbjct: 565 ANGSDDGAQPSTSTAQEQDDVLIVDSDEEGPSNSTDCS 602



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>PTMS_HUMAN (P20962) Parathymosin|
          Length = 101

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 119 EQSNGADESAEPASDGAQDEHVGEQMDTDKDD 214
           E+ NGA+E  E  ++  ++E  GE+ D ++++
Sbjct: 39  EEENGAEEEEEETAEDGEEEDEGEEEDEEEEE 70



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>YAD7_YEAST (P39728) Hypothetical 30.5 kDa protein in PYK1-SNC1 intergenic|
           region
          Length = 267

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -2

Query: 363 LQKLSM-FYSYPHNV*KQPFLLSP*QAKSTIAQPIMDIKSPQIDTSYAWEGSSLSVSICS 187
           LQKL    Y  P  +  QP LL     K  I   +   K     T Y    +S+ V++CS
Sbjct: 16  LQKLDTNVYFGPCEILTQPILLQYENIKFIIGVNLSTEKIASFYTQYFRNSNSVVVNLCS 75

Query: 186 PTCSS*APSLA 154
           PT ++ A   A
Sbjct: 76  PTTAAVATKKA 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,309,415
Number of Sequences: 219361
Number of extensions: 1228013
Number of successful extensions: 3145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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