| Clone Name | bags5c16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185150.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2592 Score = 605 bits (305), Expect = e-170 Identities = 505/569 (88%), Gaps = 2/569 (0%) Strand = Plus / Plus Query: 9 agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68 |||| |||||| |||||||||||| ||||| ||||| || || |||| |||||||||| Sbjct: 1472 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 1531 Query: 69 ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128 || |||||||||| |||||||||| ||||| |||||||||| ||| ||||||| |||| Sbjct: 1532 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 1591 Query: 129 ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188 | ||||| ||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct: 1592 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 1651 Query: 189 agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248 ||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 1652 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 1711 Query: 249 actgcatagcgggcgttatagatgagagcaaagagcagtttgaagagat-cagatccaac 307 |||||||||| || |||||||||||||||||||||||||||||||| | ||| |||| Sbjct: 1712 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 1770 Query: 308 atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367 || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| Sbjct: 1771 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 1830 Query: 368 aggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaataca 427 |||||| | |||||||||||| || ||||||||||||||||||| |||||||||| |||| Sbjct: 1831 aggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtaca 1890 Query: 428 catcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaatg 487 ||||||||||||||||||||||| || |||||||| || ||| ||| |||||||||||| Sbjct: 1891 catcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaatg 1950 Query: 488 gttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgatttttt 547 || |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||| Sbjct: 1951 gtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattcttt 2010 Query: 548 aatgctctccttgatgtgctttggtggtt 576 ||||| ||||||||||| ||||||||||| Sbjct: 2011 aatgcactccttgatgtcctttggtggtt 2039
>dbj|AK065308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O12, full insert sequence Length = 2559 Score = 597 bits (301), Expect = e-167 Identities = 504/569 (88%), Gaps = 2/569 (0%) Strand = Plus / Plus Query: 9 agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68 |||| |||||| |||||||||||| ||||| ||||| || || |||| |||||||||| Sbjct: 956 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 1015 Query: 69 ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128 || |||||||||| |||||||||| ||||| |||||||||| ||| ||||||| |||| Sbjct: 1016 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 1075 Query: 129 ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188 | ||||| ||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct: 1076 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 1135 Query: 189 agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248 |||| || ||||| |||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 1136 agatacggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 1195 Query: 249 actgcatagcgggcgttatagatgagagcaaagagcagtttgaagagat-cagatccaac 307 |||||||||| || |||||||||||||||||||||||||||||||| | ||| |||| Sbjct: 1196 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 1254 Query: 308 atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367 || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| Sbjct: 1255 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 1314 Query: 368 aggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaataca 427 |||||| | |||||||||||| || ||||||||||||||||||| |||||||||| |||| Sbjct: 1315 aggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtaca 1374 Query: 428 catcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaatg 487 ||||||||||||||||||||||| || |||||||| || ||| ||| |||||||||||| Sbjct: 1375 catcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaatg 1434 Query: 488 gttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgatttttt 547 || |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||| Sbjct: 1435 gtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattcttt 1494 Query: 548 aatgctctccttgatgtgctttggtggtt 576 ||||| ||||||||||| ||||||||||| Sbjct: 1495 aatgcactccttgatgtcctttggtggtt 1523
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 357 bits (180), Expect = 3e-95 Identities = 320/364 (87%), Gaps = 2/364 (0%) Strand = Plus / Minus Query: 9 agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68 |||| |||||| |||||||||||| ||||| ||||| || || |||| |||||||||| Sbjct: 34308915 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 34308856 Query: 69 ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128 || |||||||||| |||||||||| ||||| |||||||||| ||| ||||||| |||| Sbjct: 34308855 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 34308796 Query: 129 ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188 | ||||| ||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct: 34308795 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 34308736 Query: 189 agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248 ||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 34308735 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 34308676 Query: 249 actgcatagcgggcgttatagatgagagcaaagagcagtttgaag-agatcagatccaac 307 |||||||||| || ||||||||||||||||||||||||||||||| | |||| |||| Sbjct: 34308675 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 34308617 Query: 308 atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367 || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| Sbjct: 34308616 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 34308557 Query: 368 aggt 371 |||| Sbjct: 34308556 aggt 34308553 Score = 258 bits (130), Expect = 2e-65 Identities = 190/210 (90%) Strand = Plus / Minus Query: 367 caggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaatac 426 ||||||| | |||||||||||| || ||||||||||||||||||| |||||||||| ||| Sbjct: 34307692 caggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtac 34307633 Query: 427 acatcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaat 486 |||||||||||||||||||||||| || |||||||| || ||| ||| ||||||||||| Sbjct: 34307632 acatcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaat 34307573 Query: 487 ggttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgattttt 546 ||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || Sbjct: 34307572 ggtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattctt 34307513 Query: 547 taatgctctccttgatgtgctttggtggtt 576 |||||| ||||||||||| ||||||||||| Sbjct: 34307512 taatgcactccttgatgtcctttggtggtt 34307483
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 357 bits (180), Expect = 3e-95 Identities = 320/364 (87%), Gaps = 2/364 (0%) Strand = Plus / Minus Query: 9 agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68 |||| |||||| |||||||||||| ||||| ||||| || || |||| |||||||||| Sbjct: 34399387 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 34399328 Query: 69 ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128 || |||||||||| |||||||||| ||||| |||||||||| ||| ||||||| |||| Sbjct: 34399327 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 34399268 Query: 129 ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188 | ||||| ||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct: 34399267 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 34399208 Query: 189 agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248 ||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 34399207 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 34399148 Query: 249 actgcatagcgggcgttatagatgagagcaaagagcagtttgaag-agatcagatccaac 307 |||||||||| || ||||||||||||||||||||||||||||||| | |||| |||| Sbjct: 34399147 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 34399089 Query: 308 atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367 || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| Sbjct: 34399088 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 34399029 Query: 368 aggt 371 |||| Sbjct: 34399028 aggt 34399025 Score = 258 bits (130), Expect = 2e-65 Identities = 190/210 (90%) Strand = Plus / Minus Query: 367 caggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaatac 426 ||||||| | |||||||||||| || ||||||||||||||||||| |||||||||| ||| Sbjct: 34398164 caggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtac 34398105 Query: 427 acatcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaat 486 |||||||||||||||||||||||| || |||||||| || ||| ||| ||||||||||| Sbjct: 34398104 acatcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaat 34398045 Query: 487 ggttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgattttt 546 ||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || Sbjct: 34398044 ggtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattctt 34397985 Query: 547 taatgctctccttgatgtgctttggtggtt 576 |||||| ||||||||||| ||||||||||| Sbjct: 34397984 taatgcactccttgatgtcctttggtggtt 34397955
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 357 bits (180), Expect = 3e-95 Identities = 320/364 (87%), Gaps = 2/364 (0%) Strand = Plus / Plus Query: 9 agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68 |||| |||||| |||||||||||| ||||| ||||| || || |||| |||||||||| Sbjct: 26083 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 26142 Query: 69 ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128 || |||||||||| |||||||||| ||||| |||||||||| ||| ||||||| |||| Sbjct: 26143 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 26202 Query: 129 ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188 | ||||| ||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct: 26203 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 26262 Query: 189 agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248 ||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||| Sbjct: 26263 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 26322 Query: 249 actgcatagcgggcgttatagatgagagcaaagagcagtttgaag-agatcagatccaac 307 |||||||||| || ||||||||||||||||||||||||||||||| | |||| |||| Sbjct: 26323 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 26381 Query: 308 atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367 || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| Sbjct: 26382 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 26441 Query: 368 aggt 371 |||| Sbjct: 26442 aggt 26445 Score = 258 bits (130), Expect = 2e-65 Identities = 190/210 (90%) Strand = Plus / Plus Query: 367 caggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaatac 426 ||||||| | |||||||||||| || ||||||||||||||||||| |||||||||| ||| Sbjct: 27306 caggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtac 27365 Query: 427 acatcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaat 486 |||||||||||||||||||||||| || |||||||| || ||| ||| ||||||||||| Sbjct: 27366 acatcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaat 27425 Query: 487 ggttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgattttt 546 ||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || Sbjct: 27426 ggtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattctt 27485 Query: 547 taatgctctccttgatgtgctttggtggtt 576 |||||| ||||||||||| ||||||||||| Sbjct: 27486 taatgcactccttgatgtcctttggtggtt 27515
>gb|BT017291.1| Zea mays clone EL01N0315B03.c mRNA sequence Length = 1459 Score = 335 bits (169), Expect = 1e-88 Identities = 349/409 (85%) Strand = Plus / Plus Query: 168 atgcagtgaaggcatacatggagatgcgcaagtctaggtttaaccctgatgaacgctccc 227 ||||||||||||| |||||||||||||| || || | ||||| || ||||| || |||| Sbjct: 10 atgcagtgaaggcgtacatggagatgcgtaaatccacttttaatccagatgagcggtccc 69 Query: 228 ttgagggagtactcaatgcctactgcatagcgggcgttatagatgagagcaaagagcagt 287 ||||||||||||| ||||||||||||||||| || || ||||||||||| ||||| |||| Sbjct: 70 ttgagggagtacttaatgcctactgcatagcaggggtcatagatgagagtaaagaacagt 129 Query: 288 ttgaagagatcagatccaacatggctgtgcctagcattattgcttattgcatgatgctgt 347 ||||||| | ||| | || || |||| ||| ||||||| |||||||||||||||| Sbjct: 130 ttgaagaacttcaatctagtgtgactatgcccagcgttattgcctattgcatgatgctgt 189 Query: 348 cactctatgcaaggaacgacaggtgggctgatgcttatgatttgctggaagaaatgaaaa 407 |||| ||||| ||||| ||||||||| ||| || || ||| || ||||||||||||||| Sbjct: 190 cactatatgccaggaatgacaggtggagtgacgcctacgatctgttggaagaaatgaaaa 249 Query: 408 caaatcgtgctagtaatacacatcaagtgattgcttccatgataaagggggagtacgatg 467 ||||||||||||||| |||||||||||| ||||||||| | || || ||||| || |||| Sbjct: 250 caaatcgtgctagtagtacacatcaagtaattgcttccctaatcaaaggggaatatgatg 309 Query: 468 atagctctaattggcaaatggttgaatatgtccttgacagcagtaacttggaaggatgtg 527 ||||||| || ||||||||||||||||||||||| || | ||||| | ||||||| |||| Sbjct: 310 atagctccaactggcaaatggttgaatatgtcctcgaaaacagtaccatggaaggctgtg 369 Query: 528 actacagtttacgattttttaatgctctccttgatgtgctttggtggtt 576 |||| ||||| ||||| |||||||||||||||| ||||||||||||||| Sbjct: 370 actatagtttccgattctttaatgctctccttggtgtgctttggtggtt 418
>emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J12 on chromosome 6q16.1-16.3 Contains the 5' end of the MAP3K7 gene for mitogen-activated protein kinase kinase kinase 7 (TGF-beta activated kinase 1, TAK1) and two CpG islands, complete sequence Length = 86398 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 102 ttcagaaaagcaaagattcata 123 |||||||||||||||||||||| Sbjct: 31694 ttcagaaaagcaaagattcata 31673
>emb|AL935259.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 8/11 Length = 254050 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 gtgattgcttccatgataaag 454 ||||||||||||||||||||| Sbjct: 147714 gtgattgcttccatgataaag 147694
>emb|BX649275.5| Zebrafish DNA sequence from clone CH211-199K7 in linkage group 24, complete sequence Length = 118765 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ttgctggaagaaatgaaaaca 409 ||||||||||||||||||||| Sbjct: 78741 ttgctggaagaaatgaaaaca 78721
>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome Length = 1469720 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 atgtgtttgccaagggcggg 49 |||||||||||||||||||| Sbjct: 71710 atgtgtttgccaagggcggg 71691
>ref|NM_102812.2| Arabidopsis thaliana unknown protein AT1G30755 mRNA, complete cds Length = 2141 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 ccttgatgtgctttggtggt 575 |||||||||||||||||||| Sbjct: 1447 ccttgatgtgctttggtggt 1428
>gb|AC008324.3| Drosophila melanogaster clone BACR25K01, complete sequence Length = 172939 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 acatcaagtgattgcttcca 446 |||||||||||||||||||| Sbjct: 24797 acatcaagtgattgcttcca 24816
>gb|AC104613.2| Drosophila melanogaster clone BACR06K07, complete sequence Length = 152934 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 acatcaagtgattgcttcca 446 |||||||||||||||||||| Sbjct: 51271 acatcaagtgattgcttcca 51252
>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence Length = 244220 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 aacttggaaggatgtgacta 531 |||||||||||||||||||| Sbjct: 150030 aacttggaaggatgtgacta 150049
>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence Length = 200595 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cagggttcacagttggatga 168 |||||||||||||||||||| Sbjct: 161032 cagggttcacagttggatga 161051
>gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, complete sequence Length = 178714 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tgatttgctggaagaaatga 404 |||||||||||||||||||| Sbjct: 43645 tgatttgctggaagaaatga 43626
>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence Length = 173357 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 aacttggaaggatgtgacta 531 |||||||||||||||||||| Sbjct: 103443 aacttggaaggatgtgacta 103424
>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence Length = 203739 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 cagggttcacagttggatga 168 |||||||||||||||||||| Sbjct: 27402 cagggttcacagttggatga 27421
>gb|AC007091.3| Homo sapiens BAC clone RP11-71F18 from 7, complete sequence Length = 174327 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tgatttgctggaagaaatga 404 |||||||||||||||||||| Sbjct: 171413 tgatttgctggaagaaatga 171394
>emb|AL389888.8| Human DNA sequence from clone RP11-389K14 on chromosome 9 Contains two olfactory receptor pseudogenes and the 3' end of a novel gene, complete sequence Length = 202874 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cagaaaagcaaagattcata 123 |||||||||||||||||||| Sbjct: 182209 cagaaaagcaaagattcata 182190
>emb|AL356361.21| Human DNA sequence from clone RP11-35L17 on chromosome 1 Contains two novel genes, the 3' end of CHRM3 gene for cholinergic receptor muscarinic 3, a 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) (HMGCS1) pseudogene, a ribosomal protein S7 (RPS7) pseudogene, the 5' end of the FMN2 gene for formin 2 and a CpG island, complete sequence Length = 127832 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 agcagtaacttggaaggatg 525 |||||||||||||||||||| Sbjct: 3401 agcagtaacttggaaggatg 3382
>gb|AC069021.9| Homo sapiens chromosome 10 clone RP11-254K3, complete sequence Length = 175464 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gaagaaatgaaaacaaatcg 414 |||||||||||||||||||| Sbjct: 21297 gaagaaatgaaaacaaatcg 21278
>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a peroxiredoxin 6 (Prdx6) pseudogene, a novel gene (1700086D15Rik), a novel pseudogene, and two CpG islands, complete sequence Length = 196566 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tggaagaaatgaaaacaaat 412 |||||||||||||||||||| Sbjct: 86460 tggaagaaatgaaaacaaat 86441
>emb|AL691491.11| Mouse DNA sequence from clone RP23-426J14 on chromosome 4 Contains the 5' end of the Pappa gene for pregnancy-associated plasma protein A and a Cpg island, complete sequence Length = 199017 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 tttgctggaagaaatgaaaa 407 |||||||||||||||||||| Sbjct: 18969 tttgctggaagaaatgaaaa 18988
>gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, complete sequence Length = 216523 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gaagaaatgaaaacaaatcg 414 |||||||||||||||||||| Sbjct: 37163 gaagaaatgaaaacaaatcg 37182
>gb|AY099867.1| Arabidopsis thaliana unknown protein (At1g30750) mRNA, complete cds Length = 2141 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 ccttgatgtgctttggtggt 575 |||||||||||||||||||| Sbjct: 1447 ccttgatgtgctttggtggt 1428
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence Length = 115188 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tattcagaaaagcaaagatt 119 |||||||||||||||||||| Sbjct: 27222 tattcagaaaagcaaagatt 27241
>ref|NM_001032052.1| Drosophila melanogaster Muscle-specific protein 300 CG33715-RE, transcript variant E (Msp-300), mRNA Length = 29517 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 acatcaagtgattgcttcca 446 |||||||||||||||||||| Sbjct: 24807 acatcaagtgattgcttcca 24826
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tattcagaaaagcaaagatt 119 |||||||||||||||||||| Sbjct: 11131835 tattcagaaaagcaaagatt 11131816
>emb|BX816292.1|CNS0AE3M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH3ZA09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2114 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 ccttgatgtgctttggtggt 575 |||||||||||||||||||| Sbjct: 1487 ccttgatgtgctttggtggt 1468
>gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromosome ul, complete sequence Length = 198767 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 catcaagtgattgcttccat 447 |||||||||||||||||||| Sbjct: 2005 catcaagtgattgcttccat 2024
>gb|AE003609.4| Drosophila melanogaster chromosome 2L, section 18 of 83 of the complete sequence Length = 319287 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 acatcaagtgattgcttcca 446 |||||||||||||||||||| Sbjct: 65201 acatcaagtgattgcttcca 65220
>gb|AC005750.1|AC005750 Drosophila melanogaster DNA sequence (P1s DS03979 (D283) and DS01272 (D284)), complete sequence Length = 102516 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 acatcaagtgattgcttcca 446 |||||||||||||||||||| Sbjct: 44 acatcaagtgattgcttcca 25
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tattcagaaaagcaaagatt 119 |||||||||||||||||||| Sbjct: 11138275 tattcagaaaagcaaagatt 11138256
>gb|AY067052.1| Schmidtea mediterranea clone H.71.1g unknown mRNA sequence Length = 434 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tattcagaaaagcaaagatt 119 |||||||||||||||||||| Sbjct: 399 tattcagaaaagcaaagatt 418 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,009,419 Number of Sequences: 3902068 Number of extensions: 6009419 Number of successful extensions: 111371 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111125 Number of HSP's gapped (non-prelim): 246 length of query: 578 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 555 effective length of database: 17,143,297,704 effective search space: 9514530225720 effective search space used: 9514530225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)