ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_185150.1| Oryza sativa (japonica cultivar-group), mRNA 605 e-170
2dbj|AK065308.1| Oryza sativa (japonica cultivar-group) cDNA clon... 597 e-167
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 357 3e-95
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 357 3e-95
5gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genom... 357 3e-95
6gb|BT017291.1| Zea mays clone EL01N0315B03.c mRNA sequence 335 1e-88
7emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J... 44 0.50
8emb|AL935259.1| Lactobacillus plantarum strain WCFS1 complete ge... 42 2.0
9emb|BX649275.5| Zebrafish DNA sequence from clone CH211-199K7 in... 42 2.0
10gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome 40 7.9
11ref|NM_102812.2| Arabidopsis thaliana unknown protein AT1G30755 ... 40 7.9
12gb|AC008324.3| Drosophila melanogaster clone BACR25K01, complete... 40 7.9
13gb|AC104613.2| Drosophila melanogaster clone BACR06K07, complete... 40 7.9
14gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8... 40 7.9
15gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 7.9
16gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, com... 40 7.9
17gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosom... 40 7.9
18gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 40 7.9
19gb|AC007091.3| Homo sapiens BAC clone RP11-71F18 from 7, complet... 40 7.9
20emb|AL389888.8| Human DNA sequence from clone RP11-389K14 on chr... 40 7.9
21emb|AL356361.21| Human DNA sequence from clone RP11-35L17 on chr... 40 7.9
22gb|AC069021.9| Homo sapiens chromosome 10 clone RP11-254K3, comp... 40 7.9
23emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chro... 40 7.9
24emb|AL691491.11| Mouse DNA sequence from clone RP23-426J14 on ch... 40 7.9
25gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, com... 40 7.9
26gb|AY099867.1| Arabidopsis thaliana unknown protein (At1g30750) ... 40 7.9
27gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 40 7.9
28ref|NM_001032052.1| Drosophila melanogaster Muscle-specific prot... 40 7.9
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
30emb|BX816292.1|CNS0AE3M Arabidopsis thaliana Full-length cDNA Co... 40 7.9
31gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromos... 40 7.9
32gb|AE003609.4| Drosophila melanogaster chromosome 2L, section 18... 40 7.9
33gb|AC005750.1|AC005750 Drosophila melanogaster DNA sequence (P1s... 40 7.9
34gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
35gb|AY067052.1| Schmidtea mediterranea clone H.71.1g unknown mRNA... 40 7.9

>ref|NM_185150.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2592

 Score =  605 bits (305), Expect = e-170
 Identities = 505/569 (88%), Gaps = 2/569 (0%)
 Strand = Plus / Plus

                                                                        
Query: 9    agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68
            |||| |||||| ||||||||||||  ||||| ||||| || || |||| |||||||||| 
Sbjct: 1472 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 1531

                                                                        
Query: 69   ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128
            || |||||||||| |||||||||| ||||| ||||||||||  ||| |||||||  ||||
Sbjct: 1532 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 1591

                                                                        
Query: 129  ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188
            | ||||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 1592 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 1651

                                                                        
Query: 189  agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248
            ||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 1652 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 1711

                                                                        
Query: 249  actgcatagcgggcgttatagatgagagcaaagagcagtttgaagagat-cagatccaac 307
            |||||||||| || ||||||||||||||||||||||||||||||||  | ||| ||||  
Sbjct: 1712 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 1770

                                                                        
Query: 308  atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367
             || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct: 1771 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 1830

                                                                        
Query: 368  aggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaataca 427
            |||||| | |||||||||||| || ||||||||||||||||||| |||||||||| ||||
Sbjct: 1831 aggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtaca 1890

                                                                        
Query: 428  catcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaatg 487
            ||||||||||||||||||||||| || |||||||| || |||  ||| ||||||||||||
Sbjct: 1891 catcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaatg 1950

                                                                        
Query: 488  gttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgatttttt 547
            || |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct: 1951 gtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattcttt 2010

                                         
Query: 548  aatgctctccttgatgtgctttggtggtt 576
            ||||| ||||||||||| |||||||||||
Sbjct: 2011 aatgcactccttgatgtcctttggtggtt 2039



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>dbj|AK065308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O12, full
            insert sequence
          Length = 2559

 Score =  597 bits (301), Expect = e-167
 Identities = 504/569 (88%), Gaps = 2/569 (0%)
 Strand = Plus / Plus

                                                                        
Query: 9    agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68
            |||| |||||| ||||||||||||  ||||| ||||| || || |||| |||||||||| 
Sbjct: 956  agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 1015

                                                                        
Query: 69   ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128
            || |||||||||| |||||||||| ||||| ||||||||||  ||| |||||||  ||||
Sbjct: 1016 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 1075

                                                                        
Query: 129  ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188
            | ||||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 1076 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 1135

                                                                        
Query: 189  agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248
            |||| || ||||| |||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 1136 agatacggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 1195

                                                                        
Query: 249  actgcatagcgggcgttatagatgagagcaaagagcagtttgaagagat-cagatccaac 307
            |||||||||| || ||||||||||||||||||||||||||||||||  | ||| ||||  
Sbjct: 1196 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 1254

                                                                        
Query: 308  atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367
             || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct: 1255 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 1314

                                                                        
Query: 368  aggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaataca 427
            |||||| | |||||||||||| || ||||||||||||||||||| |||||||||| ||||
Sbjct: 1315 aggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtaca 1374

                                                                        
Query: 428  catcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaatg 487
            ||||||||||||||||||||||| || |||||||| || |||  ||| ||||||||||||
Sbjct: 1375 catcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaatg 1434

                                                                        
Query: 488  gttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgatttttt 547
            || |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct: 1435 gtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattcttt 1494

                                         
Query: 548  aatgctctccttgatgtgctttggtggtt 576
            ||||| ||||||||||| |||||||||||
Sbjct: 1495 aatgcactccttgatgtcctttggtggtt 1523



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  357 bits (180), Expect = 3e-95
 Identities = 320/364 (87%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                            
Query: 9        agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68
                |||| |||||| ||||||||||||  ||||| ||||| || || |||| |||||||||| 
Sbjct: 34308915 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 34308856

                                                                            
Query: 69       ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128
                || |||||||||| |||||||||| ||||| ||||||||||  ||| |||||||  ||||
Sbjct: 34308855 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 34308796

                                                                            
Query: 129      ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188
                | ||||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 34308795 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 34308736

                                                                            
Query: 189      agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248
                ||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 34308735 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 34308676

                                                                            
Query: 249      actgcatagcgggcgttatagatgagagcaaagagcagtttgaag-agatcagatccaac 307
                |||||||||| || ||||||||||||||||||||||||||||||| |  |||| ||||  
Sbjct: 34308675 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 34308617

                                                                            
Query: 308      atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367
                 || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct: 34308616 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 34308557

                    
Query: 368      aggt 371
                ||||
Sbjct: 34308556 aggt 34308553



 Score =  258 bits (130), Expect = 2e-65
 Identities = 190/210 (90%)
 Strand = Plus / Minus

                                                                            
Query: 367      caggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaatac 426
                ||||||| | |||||||||||| || ||||||||||||||||||| |||||||||| |||
Sbjct: 34307692 caggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtac 34307633

                                                                            
Query: 427      acatcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaat 486
                |||||||||||||||||||||||| || |||||||| || |||  ||| |||||||||||
Sbjct: 34307632 acatcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaat 34307573

                                                                            
Query: 487      ggttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgattttt 546
                ||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct: 34307572 ggtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattctt 34307513

                                              
Query: 547      taatgctctccttgatgtgctttggtggtt 576
                |||||| ||||||||||| |||||||||||
Sbjct: 34307512 taatgcactccttgatgtcctttggtggtt 34307483



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  357 bits (180), Expect = 3e-95
 Identities = 320/364 (87%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                            
Query: 9        agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68
                |||| |||||| ||||||||||||  ||||| ||||| || || |||| |||||||||| 
Sbjct: 34399387 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 34399328

                                                                            
Query: 69       ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128
                || |||||||||| |||||||||| ||||| ||||||||||  ||| |||||||  ||||
Sbjct: 34399327 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 34399268

                                                                            
Query: 129      ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188
                | ||||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 34399267 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 34399208

                                                                            
Query: 189      agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248
                ||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 34399207 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 34399148

                                                                            
Query: 249      actgcatagcgggcgttatagatgagagcaaagagcagtttgaag-agatcagatccaac 307
                |||||||||| || ||||||||||||||||||||||||||||||| |  |||| ||||  
Sbjct: 34399147 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 34399089

                                                                            
Query: 308      atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367
                 || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct: 34399088 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 34399029

                    
Query: 368      aggt 371
                ||||
Sbjct: 34399028 aggt 34399025



 Score =  258 bits (130), Expect = 2e-65
 Identities = 190/210 (90%)
 Strand = Plus / Minus

                                                                            
Query: 367      caggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaatac 426
                ||||||| | |||||||||||| || ||||||||||||||||||| |||||||||| |||
Sbjct: 34398164 caggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtac 34398105

                                                                            
Query: 427      acatcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaat 486
                |||||||||||||||||||||||| || |||||||| || |||  ||| |||||||||||
Sbjct: 34398104 acatcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaat 34398045

                                                                            
Query: 487      ggttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgattttt 546
                ||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct: 34398044 ggtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattctt 34397985

                                              
Query: 547      taatgctctccttgatgtgctttggtggtt 576
                |||||| ||||||||||| |||||||||||
Sbjct: 34397984 taatgcactccttgatgtcctttggtggtt 34397955



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>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
             sequence
          Length = 143205

 Score =  357 bits (180), Expect = 3e-95
 Identities = 320/364 (87%), Gaps = 2/364 (0%)
 Strand = Plus / Plus

                                                                         
Query: 9     agacgtacaattctcttgcaaatgtgtttgccaagggcgggctcttccgggaggctgagt 68
             |||| |||||| ||||||||||||  ||||| ||||| || || |||| |||||||||| 
Sbjct: 26083 agacctacaatgctcttgcaaatgcatttgcaaagggtggccttttccaggaggctgagg 26142

                                                                         
Query: 69    ccgtcttttctcggatgaccaacagtgctggtattcagaaaagcaaagattcatatgatg 128
             || |||||||||| |||||||||| ||||| ||||||||||  ||| |||||||  ||||
Sbjct: 26143 ccatcttttctcgaatgaccaacaatgctgctattcagaaagacaaggattcattcgatg 26202

                                                                         
Query: 129   ccctcatcgaagcatattgccagggttcacagttggatgatgcagtgaaggcatacatgg 188
             | ||||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 26203 ctctcattgaagcgtattgccagggtgcacagttagatgatgcagttaaggcatacatgg 26262

                                                                         
Query: 189   agatgcgcaagtctaggtttaaccctgatgaacgctcccttgagggagtactcaatgcct 248
             ||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 26263 agatgcggaagtccaggtttaatccagatgaacgctcccttgagggggtactcaatgcct 26322

                                                                         
Query: 249   actgcatagcgggcgttatagatgagagcaaagagcagtttgaag-agatcagatccaac 307
             |||||||||| || ||||||||||||||||||||||||||||||| |  |||| ||||  
Sbjct: 26323 actgcatagcaggtgttatagatgagagcaaagagcagtttgaagaacttcag-tccatg 26381

                                                                         
Query: 308   atggctgtgcctagcattattgcttattgcatgatgctgtcactctatgcaaggaacgac 367
              || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct: 26382 gtgactgttcctagcattattgcttattgcatgatgttgtcactctatgccaggaatgac 26441

                 
Query: 368   aggt 371
             ||||
Sbjct: 26442 aggt 26445



 Score =  258 bits (130), Expect = 2e-65
 Identities = 190/210 (90%)
 Strand = Plus / Plus

                                                                         
Query: 367   caggtgggctgatgcttatgatttgctggaagaaatgaaaacaaatcgtgctagtaatac 426
             ||||||| | |||||||||||| || ||||||||||||||||||| |||||||||| |||
Sbjct: 27306 caggtggacagatgcttatgatctgttggaagaaatgaaaacaaaccgtgctagtagtac 27365

                                                                         
Query: 427   acatcaagtgattgcttccatgataaagggggagtacgatgatagctctaattggcaaat 486
             |||||||||||||||||||||||| || |||||||| || |||  ||| |||||||||||
Sbjct: 27366 acatcaagtgattgcttccatgatcaaaggggagtatgacgatgactccaattggcaaat 27425

                                                                         
Query: 487   ggttgaatatgtccttgacagcagtaacttggaaggatgtgactacagtttacgattttt 546
             ||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct: 27426 ggtcgaatatgttcttgacaacagtaacttggaaggctgtgactacagtttacgattctt 27485

                                           
Query: 547   taatgctctccttgatgtgctttggtggtt 576
             |||||| ||||||||||| |||||||||||
Sbjct: 27486 taatgcactccttgatgtcctttggtggtt 27515



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>gb|BT017291.1| Zea mays clone EL01N0315B03.c mRNA sequence
          Length = 1459

 Score =  335 bits (169), Expect = 1e-88
 Identities = 349/409 (85%)
 Strand = Plus / Plus

                                                                       
Query: 168 atgcagtgaaggcatacatggagatgcgcaagtctaggtttaaccctgatgaacgctccc 227
           ||||||||||||| |||||||||||||| || || |  ||||| || ||||| || ||||
Sbjct: 10  atgcagtgaaggcgtacatggagatgcgtaaatccacttttaatccagatgagcggtccc 69

                                                                       
Query: 228 ttgagggagtactcaatgcctactgcatagcgggcgttatagatgagagcaaagagcagt 287
           ||||||||||||| ||||||||||||||||| || || ||||||||||| ||||| ||||
Sbjct: 70  ttgagggagtacttaatgcctactgcatagcaggggtcatagatgagagtaaagaacagt 129

                                                                       
Query: 288 ttgaagagatcagatccaacatggctgtgcctagcattattgcttattgcatgatgctgt 347
           |||||||  |   ||| |   || || |||| ||| ||||||| ||||||||||||||||
Sbjct: 130 ttgaagaacttcaatctagtgtgactatgcccagcgttattgcctattgcatgatgctgt 189

                                                                       
Query: 348 cactctatgcaaggaacgacaggtgggctgatgcttatgatttgctggaagaaatgaaaa 407
           |||| ||||| ||||| |||||||||  ||| || || ||| || |||||||||||||||
Sbjct: 190 cactatatgccaggaatgacaggtggagtgacgcctacgatctgttggaagaaatgaaaa 249

                                                                       
Query: 408 caaatcgtgctagtaatacacatcaagtgattgcttccatgataaagggggagtacgatg 467
           ||||||||||||||| |||||||||||| ||||||||| | || || ||||| || ||||
Sbjct: 250 caaatcgtgctagtagtacacatcaagtaattgcttccctaatcaaaggggaatatgatg 309

                                                                       
Query: 468 atagctctaattggcaaatggttgaatatgtccttgacagcagtaacttggaaggatgtg 527
           ||||||| || ||||||||||||||||||||||| || | ||||| | ||||||| ||||
Sbjct: 310 atagctccaactggcaaatggttgaatatgtcctcgaaaacagtaccatggaaggctgtg 369

                                                            
Query: 528 actacagtttacgattttttaatgctctccttgatgtgctttggtggtt 576
           |||| ||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct: 370 actatagtttccgattctttaatgctctccttggtgtgctttggtggtt 418



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>emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J12 on chromosome 6q16.1-16.3
             Contains the 5' end of the MAP3K7 gene for
             mitogen-activated protein kinase kinase kinase 7 (TGF-beta
             activated kinase 1, TAK1) and two CpG islands, complete
             sequence
          Length = 86398

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 102   ttcagaaaagcaaagattcata 123
             ||||||||||||||||||||||
Sbjct: 31694 ttcagaaaagcaaagattcata 31673



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>emb|AL935259.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 8/11
          Length = 254050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 434    gtgattgcttccatgataaag 454
              |||||||||||||||||||||
Sbjct: 147714 gtgattgcttccatgataaag 147694



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>emb|BX649275.5| Zebrafish DNA sequence from clone CH211-199K7 in linkage group 24,
             complete sequence
          Length = 118765

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 389   ttgctggaagaaatgaaaaca 409
             |||||||||||||||||||||
Sbjct: 78741 ttgctggaagaaatgaaaaca 78721



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>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgtgtttgccaagggcggg 49
             ||||||||||||||||||||
Sbjct: 71710 atgtgtttgccaagggcggg 71691



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>ref|NM_102812.2| Arabidopsis thaliana unknown protein AT1G30755 mRNA, complete cds
          Length = 2141

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 556  ccttgatgtgctttggtggt 575
            ||||||||||||||||||||
Sbjct: 1447 ccttgatgtgctttggtggt 1428



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>gb|AC008324.3| Drosophila melanogaster clone BACR25K01, complete sequence
          Length = 172939

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   acatcaagtgattgcttcca 446
             ||||||||||||||||||||
Sbjct: 24797 acatcaagtgattgcttcca 24816



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>gb|AC104613.2| Drosophila melanogaster clone BACR06K07, complete sequence
          Length = 152934

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   acatcaagtgattgcttcca 446
             ||||||||||||||||||||
Sbjct: 51271 acatcaagtgattgcttcca 51252



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>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence
          Length = 244220

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 512    aacttggaaggatgtgacta 531
              ||||||||||||||||||||
Sbjct: 150030 aacttggaaggatgtgacta 150049



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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    cagggttcacagttggatga 168
              ||||||||||||||||||||
Sbjct: 161032 cagggttcacagttggatga 161051



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>gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, complete sequence
          Length = 178714

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   tgatttgctggaagaaatga 404
             ||||||||||||||||||||
Sbjct: 43645 tgatttgctggaagaaatga 43626



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>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence
          Length = 173357

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 512    aacttggaaggatgtgacta 531
              ||||||||||||||||||||
Sbjct: 103443 aacttggaaggatgtgacta 103424



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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   cagggttcacagttggatga 168
             ||||||||||||||||||||
Sbjct: 27402 cagggttcacagttggatga 27421



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>gb|AC007091.3| Homo sapiens BAC clone RP11-71F18 from 7, complete sequence
          Length = 174327

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    tgatttgctggaagaaatga 404
              ||||||||||||||||||||
Sbjct: 171413 tgatttgctggaagaaatga 171394



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>emb|AL389888.8| Human DNA sequence from clone RP11-389K14 on chromosome 9 Contains two
              olfactory receptor pseudogenes and the 3' end of a novel
              gene, complete sequence
          Length = 202874

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    cagaaaagcaaagattcata 123
              ||||||||||||||||||||
Sbjct: 182209 cagaaaagcaaagattcata 182190



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>emb|AL356361.21| Human DNA sequence from clone RP11-35L17 on chromosome 1 Contains two
            novel genes, the 3' end of CHRM3 gene for cholinergic
            receptor muscarinic 3, a
            3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
            (soluble) (HMGCS1) pseudogene, a ribosomal protein S7
            (RPS7) pseudogene, the 5' end of the FMN2 gene for formin
            2 and a CpG island, complete sequence
          Length = 127832

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 506  agcagtaacttggaaggatg 525
            ||||||||||||||||||||
Sbjct: 3401 agcagtaacttggaaggatg 3382



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>gb|AC069021.9| Homo sapiens chromosome 10 clone RP11-254K3, complete sequence
          Length = 175464

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gaagaaatgaaaacaaatcg 414
             ||||||||||||||||||||
Sbjct: 21297 gaagaaatgaaaacaaatcg 21278



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>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the
             Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a
             peroxiredoxin 6 (Prdx6) pseudogene, a novel gene
             (1700086D15Rik), a novel pseudogene, and two CpG islands,
             complete sequence
          Length = 196566

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   tggaagaaatgaaaacaaat 412
             ||||||||||||||||||||
Sbjct: 86460 tggaagaaatgaaaacaaat 86441



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>emb|AL691491.11| Mouse DNA sequence from clone RP23-426J14 on chromosome 4 Contains the
             5' end of the Pappa gene for pregnancy-associated plasma
             protein A and a Cpg island, complete sequence
          Length = 199017

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   tttgctggaagaaatgaaaa 407
             ||||||||||||||||||||
Sbjct: 18969 tttgctggaagaaatgaaaa 18988



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>gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, complete sequence
          Length = 216523

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gaagaaatgaaaacaaatcg 414
             ||||||||||||||||||||
Sbjct: 37163 gaagaaatgaaaacaaatcg 37182



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>gb|AY099867.1| Arabidopsis thaliana unknown protein (At1g30750) mRNA, complete cds
          Length = 2141

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 556  ccttgatgtgctttggtggt 575
            ||||||||||||||||||||
Sbjct: 1447 ccttgatgtgctttggtggt 1428



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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   tattcagaaaagcaaagatt 119
             ||||||||||||||||||||
Sbjct: 27222 tattcagaaaagcaaagatt 27241



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>ref|NM_001032052.1| Drosophila melanogaster Muscle-specific protein 300 CG33715-RE,
             transcript variant E (Msp-300), mRNA
          Length = 29517

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   acatcaagtgattgcttcca 446
             ||||||||||||||||||||
Sbjct: 24807 acatcaagtgattgcttcca 24826



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 100      tattcagaaaagcaaagatt 119
                ||||||||||||||||||||
Sbjct: 11131835 tattcagaaaagcaaagatt 11131816



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>emb|BX816292.1|CNS0AE3M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH3ZA09 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2114

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 556  ccttgatgtgctttggtggt 575
            ||||||||||||||||||||
Sbjct: 1487 ccttgatgtgctttggtggt 1468



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>gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromosome ul, complete
            sequence
          Length = 198767

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 428  catcaagtgattgcttccat 447
            ||||||||||||||||||||
Sbjct: 2005 catcaagtgattgcttccat 2024



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>gb|AE003609.4| Drosophila melanogaster chromosome 2L, section 18 of 83 of the complete
             sequence
          Length = 319287

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   acatcaagtgattgcttcca 446
             ||||||||||||||||||||
Sbjct: 65201 acatcaagtgattgcttcca 65220



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>gb|AC005750.1|AC005750 Drosophila melanogaster DNA sequence (P1s DS03979 (D283) and
           DS01272 (D284)), complete sequence
          Length = 102516

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 427 acatcaagtgattgcttcca 446
           ||||||||||||||||||||
Sbjct: 44  acatcaagtgattgcttcca 25



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 100      tattcagaaaagcaaagatt 119
                ||||||||||||||||||||
Sbjct: 11138275 tattcagaaaagcaaagatt 11138256



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>gb|AY067052.1| Schmidtea mediterranea clone H.71.1g unknown mRNA sequence
          Length = 434

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 100 tattcagaaaagcaaagatt 119
           ||||||||||||||||||||
Sbjct: 399 tattcagaaaagcaaagatt 418


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,009,419
Number of Sequences: 3902068
Number of extensions: 6009419
Number of successful extensions: 111371
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111125
Number of HSP's gapped (non-prelim): 246
length of query: 578
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 555
effective length of database: 17,143,297,704
effective search space: 9514530225720
effective search space used: 9514530225720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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