ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags5b01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4) Length = 658 Score = 716 bits (361), Expect = 0.0 Identities = 379/385 (98%) Strand = Plus / Plus Query: 1 gttgctgcaaggacacgttagctagaaactgctacaacacttgccgtttcgcgggtggtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114 gttgctgcaaggacacgttagctagaaactgctacaacacttgccgtttcgcgggtggtt 173 Query: 61 cccgtccagtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgcccta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 cccgtccagtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgcccta 233 Query: 121 gtgactatcctaaactgaatcttctccctgaatccggtgaaccagatgtcactcagtact 180 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 234 gtgactatcctaaacttaatcttctccctgaatccggtgaaccagatgtcactcagtact 293 Query: 181 gcaccattggatgcaggaattctgtctgtaacaatatggacaatgttttccgtggccaag 240 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct: 294 gcaccattggatgcaggaattctgtctgtgacaacatggacaatgttttccgtggccaag 353 Query: 241 aaatgaaattcgacatgggactctgcagcaacgcatgtgcccgtttctgcaatgatggtg 300 | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 354 agatgaaattcgacatgggactctgcagcaacgcatgtgcccgtttttgtaatgatggtg 413 Query: 301 cagtcattcagtctgttgaagcctaatcatgccttcttgtgcatgatttctatggccaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 cagtcattcagtctgttgaagcctaatcatgccttcttgtgcatgatttctatggccaag 473 Query: 361 gtcgtattgtcattttgtcttgaat 385 ||||||||||||||||||||||||| Sbjct: 474 gtcgtattgtcattttgtcttgaat 498
>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4) Length = 637 Score = 708 bits (357), Expect = 0.0 Identities = 378/385 (98%) Strand = Plus / Plus Query: 1 gttgctgcaaggacacgttagctagaaactgctacaacacttgccgtttcgcgggtggtt 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 107 gttgctgcaaggacacgttagctagaaactgctacaacacttgccatttcgcgggtggtt 166 Query: 61 cccgtccagtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgcccta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 167 cccgtccagtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgcccta 226 Query: 121 gtgactatcctaaactgaatcttctccctgaatccggtgaaccagatgtcactcagtact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 227 gtgactatcctaaactgaatcttctccctgaatccggtgaaccagatgtcacgcagtact 286 Query: 181 gcaccattggatgcaggaattctgtctgtaacaatatggacaatgttttccgtggccaag 240 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct: 287 gcaccattggatgcaggaattctgtctgtgacaacatggacaatgttttccgtggccaag 346 Query: 241 aaatgaaattcgacatgggactctgcagcaacgcatgtgcccgtttctgcaatgatggtg 300 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 347 agatgaaattcgacatgggactctgcagcaacgcatgtgcccgtttctgtaatgatggtg 406 Query: 301 cagtcattcagtctgttgaagcctaatcatgccttcttgtgcatgatttctatggccaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 407 cagtcattcagtctgttgaagcctaatcatgccttcttgtgcatgatttctatggccatg 466 Query: 361 gtcgtattgtcattttgtcttgaat 385 ||||||||||||||||||||||||| Sbjct: 467 gtcgtattgtcattttgtcttgaat 491
>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2) Length = 453 Score = 559 bits (282), Expect = e-156 Identities = 309/318 (97%) Strand = Plus / Plus Query: 68 agtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgccctagtgacta 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgccctagtgacta 60 Query: 128 tcctaaactgaatcttctccctgaatccggtgaaccagatgtcactcagtactgcaccat 187 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 61 tcctaaacttaatcttctccctgaatccggtgaacccgatgtcactcagtactgcaccat 120 Query: 188 tggatgcaggaattctgtctgtaacaatatggacaatgttttccgtggccaagaaatgaa 247 |||||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||| Sbjct: 121 tggatgcaggaattctgtctgtgacaacatggacaatgttttccatggccaagagatgaa 180 Query: 248 attcgacatgggactctgcagcaacgcatgtgcccgtttctgcaatgatggtgcagtcat 307 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 181 attcgacatgggactctgcagcaacgcatgtgcccgtttttgtaatgatggtgcagtcat 240 Query: 308 tcagtctgttgaagcctaatcatgccttcttgtgcatgatttctatggccaaggtcgtat 367 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tcagtctgttgaatcctaatcatgccttcttgtgcatgatttctatggccaaggtcgtat 300 Query: 368 tgtcattttgtcttgaat 385 |||||||||||||||||| Sbjct: 301 tgtcattttgtcttgaat 318
>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3) Length = 544 Score = 470 bits (237), Expect = e-129 Identities = 324/353 (91%) Strand = Plus / Plus Query: 24 agaaactgctacaacacttgccgtttcgcgggtggttcccgtccagtctgcgcaggtgct 83 ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 82 agaaactgctacaacgcctgccgtttcgctggtggttcccgaccagtctgcgcaactgct 141 Query: 84 tgtcgttgtaaaatcataagtggtccaaaatgccctagtgactatcctaaactgaatctt 143 ||| |||||||||||||||| || |||| ||| ||||| ||||||||||| ||||||||| Sbjct: 142 tgtggttgtaaaatcataagcggcccaacatgtcctagggactatcctaagctgaatctt 201 Query: 144 ctccctgaatccggtgaaccagatgtcactcagtactgcaccattggatgcaggaattct 203 ||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||| ||| Sbjct: 202 ctccctgaatccggtgaaccaaatgcgactgagtactgcacaattggatgcaggacttcc 261 Query: 204 gtctgtaacaatatggacaatgttttccgtggccaagaaatgaaattcgacatgggactc 263 |||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 262 gtctgtgacaacatggacaatgtttcccgtggccaagagatgaaattcgacatgggactc 321 Query: 264 tgcagcaacgcatgtgcccgtttctgcaatgatggtgcagtcattcagtctgttgaagcc 323 |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| Sbjct: 322 tgcagcaacgcatgtgcccgtttctgtaatgatggtgaagtcattcagtctcttgaagcc 381 Query: 324 taatcatgccttcttgtgcatgatttctatggccaaggtcgtattgtcatttt 376 |||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 382 taatcatgccttcttgggcatgatttctatggccaaggtcgttttgtcatttt 434
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940 Length = 663 Score = 470 bits (237), Expect = e-129 Identities = 324/353 (91%) Strand = Plus / Plus Query: 24 agaaactgctacaacacttgccgtttcgcgggtggttcccgtccagtctgcgcaggtgct 83 ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 155 agaaactgctacaacgcctgccgtttcgctggtggttcccgaccagtctgcgcaactgct 214 Query: 84 tgtcgttgtaaaatcataagtggtccaaaatgccctagtgactatcctaaactgaatctt 143 ||| |||||||||||||||| || |||| ||| ||||| ||||||||||| ||||||||| Sbjct: 215 tgtggttgtaaaatcataagcggcccaacatgtcctagggactatcctaagctgaatctt 274 Query: 144 ctccctgaatccggtgaaccagatgtcactcagtactgcaccattggatgcaggaattct 203 ||||||||||||||||||||| ||| ||| |||||||||| ||||||||| ||| ||| Sbjct: 275 ctccctgaatccggtgaaccaaatgcgactgagtactgcacaattggatgccggacttcc 334 Query: 204 gtctgtaacaatatggacaatgttttccgtggccaagaaatgaaattcgacatgggactc 263 |||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 335 gtctgtgacaacatggacaatgtttcccgtggccaagagatgaaattcgacatgggactc 394 Query: 264 tgcagcaacgcatgtgcccgtttctgcaatgatggtgcagtcattcagtctgttgaagcc 323 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct: 395 tgcagcaacgcatgtgcccgtttctgtaatgatggtgaagtcattcagtctgttgaagcc 454 Query: 324 taatcatgccttcttgtgcatgatttctatggccaaggtcgtattgtcatttt 376 |||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 455 taatcatgccttcttgggcatgatttctatggccaaggtcgttttgtcatttt 507
>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348 Length = 608 Score = 470 bits (237), Expect = e-129 Identities = 324/353 (91%) Strand = Plus / Plus Query: 24 agaaactgctacaacacttgccgtttcgcgggtggttcccgtccagtctgcgcaggtgct 83 ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 155 agaaactgctacaacgcctgccgtttcgctggtggttcccgaccagtctgcgcaactgct 214 Query: 84 tgtcgttgtaaaatcataagtggtccaaaatgccctagtgactatcctaaactgaatctt 143 ||| |||||||||||||||| || |||| ||| ||||| ||||||||||| ||||||||| Sbjct: 215 tgtggttgtaaaatcataagcggcccaacatgtcctagggactatcctaagctgaatctt 274 Query: 144 ctccctgaatccggtgaaccagatgtcactcagtactgcaccattggatgcaggaattct 203 ||||||||||||||||||||| ||| ||| |||||||||| ||||||||| ||| ||| Sbjct: 275 ctccctgaatccggtgaaccaaatgcgactgagtactgcacaattggatgccggacttcc 334 Query: 204 gtctgtaacaatatggacaatgttttccgtggccaagaaatgaaattcgacatgggactc 263 |||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 335 gtctgtgacaacatggacaatgtttcccgtggccaagagatgaaattcgacatgggactc 394 Query: 264 tgcagcaacgcatgtgcccgtttctgcaatgatggtgcagtcattcagtctgttgaagcc 323 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct: 395 tgcagcaacgcatgtgcccgtttctgtaatgatggtgaagtcattcagtctgttgaagcc 454 Query: 324 taatcatgccttcttgtgcatgatttctatggccaaggtcgtattgtcatttt 376 |||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 455 taatcatgccttcttgggcatgatttctatggccaaggtcgttttgtcatttt 507
>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872 Length = 540 Score = 470 bits (237), Expect = e-129 Identities = 324/353 (91%) Strand = Plus / Plus Query: 24 agaaactgctacaacacttgccgtttcgcgggtggttcccgtccagtctgcgcaggtgct 83 ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 155 agaaactgctacaacgcctgccgtttcgctggtggttcccgaccagtctgcgcaactgct 214 Query: 84 tgtcgttgtaaaatcataagtggtccaaaatgccctagtgactatcctaaactgaatctt 143 ||| |||||||||||||||| || |||| ||| ||||| ||||||||||| ||||||||| Sbjct: 215 tgtggttgtaaaatcataagcggcccaacatgtcctagggactatcctaagctgaatctt 274 Query: 144 ctccctgaatccggtgaaccagatgtcactcagtactgcaccattggatgcaggaattct 203 ||||||||||||||||||||| ||| ||| |||||||||| ||||||||| ||| ||| Sbjct: 275 ctccctgaatccggtgaaccaaatgcgactgagtactgcacaattggatgccggacttcc 334 Query: 204 gtctgtaacaatatggacaatgttttccgtggccaagaaatgaaattcgacatgggactc 263 |||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 335 gtctgtgacaacatggacaatgtttcccgtggccaagagatgaaattcgacatgggactc 394 Query: 264 tgcagcaacgcatgtgcccgtttctgcaatgatggtgcagtcattcagtctgttgaagcc 323 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct: 395 tgcagcaacgcatgtgcccgtttctgtaatgatggtgaagtcattcagtctgttgaagcc 454 Query: 324 taatcatgccttcttgtgcatgatttctatggccaaggtcgtattgtcatttt 376 |||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 455 taatcatgccttcttgggcatgatttctatggccaaggtcgttttgtcatttt 507
>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3) Length = 491 Score = 444 bits (224), Expect = e-122 Identities = 317/348 (91%) Strand = Plus / Plus Query: 29 ctgctacaacacttgccgtttcgcgggtggttcccgtccagtctgcgcaggtgcttgtcg 88 |||||||||| | ||||||||||| ||||||||||| |||||||||||| ||||||| | Sbjct: 1 ctgctacaacgcctgccgtttcgccggtggttcccgaccagtctgcgcaactgcttgtgg 60 Query: 89 ttgtaaaatcataagtggtccaaaatgccctagtgactatcctaaactgaatcttctccc 148 ||||||||||||||| || |||| || ||||| ||||||||||| |||||||||||||| Sbjct: 61 ttgtaaaatcataagcggcccaacctgtcctagggactatcctaagctgaatcttctccc 120 Query: 149 tgaatccggtgaaccagatgtcactcagtactgcaccattggatgcaggaattctgtctg 208 |||||||||||||||| ||| ||| |||||||||| ||||||||||||| ||| ||||| Sbjct: 121 tgaatccggtgaaccaaatgcgactgagtactgcacaattggatgcaggacttccgtctg 180 Query: 209 taacaatatggacaatgttttccgtggccaagaaatgaaattcgacatgggactctgcag 268 | |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct: 181 tgacaacctggacaatgtttcccgtggccaagagatgaaattcgacatgggactctgcag 240 Query: 269 caacgcatgtgcccgtttctgcaatgatggtgcagtcattcagtctgttgaagcctaatc 328 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct: 241 caacgcatgtgcccgtttctgtaatgatggtgaagtcattcagtctgttgaagcctaatc 300 Query: 329 atgccttcttgtgcatgatttctatggccaaggtcgtattgtcatttt 376 ||||||||||| ||||||||||||||||||||||||| || ||||||| Sbjct: 301 atgccttcttgggcatgatttctatggccaaggtcgttttttcatttt 348
>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin Length = 414 Score = 379 bits (191), Expect = e-102 Identities = 275/303 (90%) Strand = Plus / Plus Query: 24 agaaactgctacaacacttgccgtttcgcgggtggttcccgtccagtctgcgcaggtgct 83 ||||||||||||||| | |||| |||||| ||||||||||| |||||||||||| |||| Sbjct: 112 agaaactgctacaacgcctgccatttcgccggtggttcccgaccagtctgcgcaactgct 171 Query: 84 tgtcgttgtaaaatcataagtggtccaaaatgccctagtgactatcctaaactgaatctt 143 ||| |||||||||||||||| || |||| ||| ||||| ||||||||||| ||||||||| Sbjct: 172 tgtggttgtaaaatcataagcggcccaacatgtcctagggactatcctaagctgaatctt 231 Query: 144 ctccctgaatccggtgaaccagatgtcactcagtactgcaccattggatgcaggaattct 203 ||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||| ||| Sbjct: 232 ctccctgaatccggtgaaccaaatgcgactgagtactgcacaattggatgcaggacttcc 291 Query: 204 gtctgtaacaatatggacaatgttttccgtggccaagaaatgaaattcgacatgggactc 263 |||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 292 gtctgtgacaacatggacaatgtttcccgtggccaagagatgaaattcgacatgggactc 351 Query: 264 tgcagcaacgcatgtgcccgtttctgcaatgatggtgcagtcattcagtctgttgaagcc 323 |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 352 tgcagcaacgcatgtgcccgtttctgtaatgatggtgatgtcattcagtctgttgaagcc 411 Query: 324 taa 326 ||| Sbjct: 412 taa 414
>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds Length = 2406 Score = 313 bits (158), Expect = 2e-82 Identities = 158/158 (100%) Strand = Plus / Plus Query: 1 gttgctgcaaggacacgttagctagaaactgctacaacacttgccgtttcgcgggtggtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 gttgctgcaaggacacgttagctagaaactgctacaacacttgccgtttcgcgggtggtt 1678 Query: 61 cccgtccagtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgcccta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 cccgtccagtctgcgcaggtgcttgtcgttgtaaaatcataagtggtccaaaatgcccta 1738 Query: 121 gtgactatcctaaactgaatcttctccctgaatccggt 158 |||||||||||||||||||||||||||||||||||||| Sbjct: 1739 gtgactatcctaaactgaatcttctccctgaatccggt 1776 Score = 303 bits (153), Expect = 2e-79 Identities = 159/161 (98%) Strand = Plus / Plus Query: 225 gttttccgtggccaagaaatgaaattcgacatgggactctgcagcaacgcatgtgcccgt 284 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2031 gttttccgtggccaagagatgaaattcgacatgggactctgcagcaacgcatgtgcccgt 2090 Query: 285 ttctgcaatgatggtgcagtcattcagtctgttgaagcctaatcatgccttcttgtgcat 344 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2091 ttctgtaatgatggtgcagtcattcagtctgttgaagcctaatcatgccttcttgtgcat 2150 Query: 345 gatttctatggccaaggtcgtattgtcattttgtcttgaat 385 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2151 gatttctatggccaaggtcgtattgtcattttgtcttgaat 2191 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Plus Query: 156 ggtgaaccagatgtcactcagtactgcaccattggatgcaggaattctgtctgtaacaat 215 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 1868 ggtgaaccagatgtcactcagtactgcaccattggatgcacgaattctgtctgtgacaac 1927 Query: 216 atggacaatg 225 |||||||||| Sbjct: 1928 atggacaatg 1937
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds Length = 2259 Score = 246 bits (124), Expect = 4e-62 Identities = 145/152 (95%) Strand = Plus / Plus Query: 225 gttttccgtggccaagaaatgaaattcgacatgggactctgcagcaacgcatgtgcccgt 284 |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2054 gtttcccgtggccaagagatgaaatttgacatgggactctgcagcaacgcatgtgcccgt 2113 Query: 285 ttctgcaatgatggtgcagtcattcagtctgttgaagcctaatcatgccttcttgtgcat 344 ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 2114 ttctgtaatgatggtgaagtcattcagtctgttgaagcctaatcatgccttcttgggcat 2173 Query: 345 gatttctatggccaaggtcgtattgtcatttt 376 ||||||||||||||||||||| |||||||||| Sbjct: 2174 gatttctatggccaaggtcgttttgtcatttt 2205 Score = 157 bits (79), Expect = 3e-35 Identities = 121/135 (89%) Strand = Plus / Plus Query: 24 agaaactgctacaacacttgccgtttcgcgggtggttcccgtccagtctgcgcaggtgct 83 ||||||||||||||| | ||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1663 agaaactgctacaacgcctgccgtttcgccggtggttcccgaccagtctgcgcaactgct 1722 Query: 84 tgtcgttgtaaaatcataagtggtccaaaatgccctagtgactatcctaaactgaatctt 143 ||| |||||||||||||||| || |||| || ||||| ||||||||||| ||||||||| Sbjct: 1723 tgtggttgtaaaatcataagcggcccaacctgtcctagggactatcctaagctgaatctt 1782 Query: 144 ctccctgaatccggt 158 ||||||||||||||| Sbjct: 1783 ctccctgaatccggt 1797 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 156 ggtgaaccagatgtcactcagtactgcaccattggatgcaggaattctgtctgtaacaat 215 ||||||||| |||| ||| |||||||||| ||||||||||||| ||| || ||| |||| Sbjct: 1894 ggtgaaccaaatgtgactgagtactgcacaattggatgcaggacttccgtttgtgacaac 1953 Query: 216 atggacaatg 225 |||||||||| Sbjct: 1954 atggacaatg 1963
>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds Length = 641 Score = 157 bits (79), Expect = 3e-35 Identities = 199/239 (83%) Strand = Plus / Plus Query: 125 ctatcctaaactgaatcttctccctgaatccggtgaaccagatgtcactcagtactgcac 184 |||| |||||||| ||||||| | ||||||||||||||| ||||||||| |||||||||| Sbjct: 258 ctattctaaactgcatcttctacttgaatccggtgaaccggatgtcactgagtactgcac 317 Query: 185 cattggatgcaggaattctgtctgtaacaatatggacaatgttttccgtggccaagaaat 244 ||| ||||||| || ||| || ||| |||| |||||||||||| | | ||||||||| || Sbjct: 318 cataggatgcatgacttccgtttgtgacaacatggacaatgttattcatggccaagagat 377 Query: 245 gaaattcgacatgggactctgcagcaacgcatgtgcccgtttctgcaatgatggtgcagt 304 |||| |||||||| |||||||| ||| | ||||| |||||||| || | ||||| || Sbjct: 378 gaaaatcgacatgctactctgcaacaaagaatgtgttcgtttctgtaacaagggtgccgt 437 Query: 305 cattcagtctgttgaagcctaatcatgccttcttgtgcatgatttctatggccaaggtc 363 ||||| ||| | |||| ||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 438 cattccatctttccaagcttaatcatgcactcttgtgcatgatttctttggccgaggtc 496
>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds Length = 678 Score = 71.9 bits (36), Expect = 1e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 231 cgtggccaagaaatgaaattcgacatgggactctgcagcaacgcatgtgcccgtttctgc 290 ||||||||||| ||||| |||||||| | |||||| ||||||||||| ||||||||| Sbjct: 415 cgtggccaagagatgaacatcgacatgcaagtctgcaacaacgcatgtgtccgtttctgt 474 Query: 291 aatgatggtgcagtcattcagtctgttgaagcctaatcatgccttcttgtgcatgatttc 350 || | ||||| |||| || ||||| | |||||||||||| ||| |||| | ||||| Sbjct: 475 aacaagggtgccgtcaatccatctgtcggggcctaatcatgcactctcgtgccttatttc 534 Query: 351 tatggccaaggtcgtattgtcatt 374 |||||||| |||||| ||| |||| Sbjct: 535 tatggccatggtcgttttgccatt 558
>emb|AL808121.7| Zebrafish DNA sequence from clone CH211-251B22, complete sequence Length = 154450 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 cctaatcatgccttcttgtgca 343 |||||||||||||||||||||| Sbjct: 65535 cctaatcatgccttcttgtgca 65514
>gb|AC158552.5| Mus musculus chromosome 3, clone RP23-97D22, complete sequence Length = 235709 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 tgccttcttgtgcatgatttctat 353 |||||||||||| ||||||||||| Sbjct: 163365 tgccttcttgtgtatgatttctat 163342
>emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chromosome 1 Contains the 3' end of a histone deacetylase 1 (HDAC1) pseudogene, the 3' end of the MARK1 gene for MAP/microtubule affinity-regulating kinase, a novel gene, a novel gene (FLJ14146) and a CpG island, complete sequence Length = 121601 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 caaaatgccctagtgactat 128 |||||||||||||||||||| Sbjct: 119934 caaaatgccctagtgactat 119915
>emb|AL359353.11| Human DNA sequence from clone RP11-124J24 on chromosome 1 Contains the 5' end of a novel gene (FLJ20605) and a CpG island, complete sequence Length = 33915 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 caaaatgccctagtgactat 128 |||||||||||||||||||| Sbjct: 333 caaaatgccctagtgactat 314
>emb|BX322615.6| Zebrafish DNA sequence from clone DKEY-81L20 in linkage group 17, complete sequence Length = 120315 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gtgcagtcattcagtctgtt 317 |||||||||||||||||||| Sbjct: 61602 gtgcagtcattcagtctgtt 61583
>gb|AC027271.7| Homo sapiens BAC clone RP11-365H22 from 4, complete sequence Length = 177985 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaaatcataagtggtccaaa 112 |||||||||||||||||||| Sbjct: 57031 aaaatcataagtggtccaaa 57050
>gb|AC008961.7| Homo sapiens chromosome 5 clone CTD-2354P9, complete sequence Length = 140200 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ctgtaacaatatggacaatg 225 |||||||||||||||||||| Sbjct: 70466 ctgtaacaatatggacaatg 70485 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,970,957 Number of Sequences: 3902068 Number of extensions: 2970957 Number of successful extensions: 50646 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50617 Number of HSP's gapped (non-prelim): 28 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
