Clone Information

BLAST Search Result

Clone Name	bags4l20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467700.1\| Oryza sativa (japonica cultivar-group), mRNA	248	2e-62
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
3	dbj\|AP004815.3\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
4	dbj\|AP005112.3\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
5	gb\|AY106868.1\| Zea mays PCO072630 mRNA sequence	210	4e-51
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	103	6e-19
7	dbj\|AP004725.3\| Oryza sativa (japonica cultivar-group) genomic D...	103	6e-19
8	gb\|BT018158.1\| Zea mays clone EL01N0556B09.c mRNA sequence	62	2e-06
9	gb\|AY111143.1\| Zea mays CL50626_1 mRNA sequence	62	2e-06
10	gb\|AC100149.12\| Mus musculus chromosome 10, clone RP23-43F3, com...	50	0.008
11	gb\|AC159380.8\| Mus musculus 10 BAC RP24-460M18 (Roswell Park Can...	50	0.008
12	gb\|AC146896.15\| Mus musculus chromosome X clone xcat-28-97f16, c...	42	1.9
13	gb\|AC159286.3\| Mus musculus BAC clone RP23-314E22 from chromosom...	42	1.9
14	gb\|AC123067.4\| Mus musculus BAC clone RP23-20M6 from chromosome ...	42	1.9
15	gb\|AC011283.3\| Homo sapiens BAC clone CTD-2016A9 from 7, complet...	42	1.9
16	gb\|AC093447.17\| Mus musculus strain 129/Sv clone ct7-25g12 map X...	42	1.9
17	emb\|AL732391.7\| Mouse DNA sequence from clone RP23-364H13 on chr...	42	1.9
18	ref\|XM_423478.1\| PREDICTED: Gallus gallus similar to ovomacroglo...	40	7.6
19	ref\|XM_614120.2\| PREDICTED: Bos taurus similar to Probable catio...	40	7.6
20	ref\|XM_881097.1\| PREDICTED: Bos taurus similar to Probable catio...	40	7.6
21	gb\|AC073201.6\| Homo sapiens BAC clone RP11-297M20 from 7, comple...	40	7.6
22	emb\|AL356753.16\| Human DNA sequence from clone RP11-481G8 on chr...	40	7.6
23	gb\|AC098563.6\| Rattus norvegicus 1 BAC CH230-123A15 (Children's ...	40	7.6
24	gb\|U00096.2\| Escherichia coli K-12 MG1655, complete genome	40	7.6
25	gb\|AC025029.16\| Homo sapiens 3 BAC RP11-442C9 (Roswell Park Canc...	40	7.6
26	emb\|AL035443.4\|HS137H15 Human DNA sequence from clone RP1-137H15...	40	7.6
27	emb\|AL604066.9\| Mouse DNA sequence from clone RP23-174M12 on chr...	40	7.6
28	dbj\|AP009048.1\| Escherichia coli W3110 DNA, complete genome	40	7.6
29	gb\|AC010677.4\| Homo sapiens chromosome 7 clone CTD-2304L4, compl...	40	7.6
30	gb\|AC155722.9\| Mus musculus 6 BAC RP24-204J8 (Roswell Park Cance...	40	7.6
31	gb\|AC158653.7\| Mus musculus 6 BAC RP23-418F10 (Roswell Park Canc...	40	7.6
32	gb\|AC079602.15\| Homo sapiens 12 BAC RP11-216P16 (Roswell Park Ca...	40	7.6
33	gb\|AE017194.1\| Bacillus cereus ATCC 10987, complete genome	40	7.6
34	gb\|AC157825.3\| Mus musculus BAC clone RP23-230M23 from chromosom...	40	7.6
35	gb\|AE005174.2\| Escherichia coli O157:H7 EDL933, complete genome	40	7.6
36	dbj\|BA000007.2\| Escherichia coli O157:H7 DNA, complete genome	40	7.6
37	gb\|CP000034.1\| Shigella dysenteriae Sd197, complete genome	40	7.6
38	emb\|AL805907.5\| Mouse DNA sequence from clone RP23-262M20 on chr...	40	7.6
39	emb\|AJ223837.1\|MMU223837 Mus musculus Eef1a2 gene (mutated gene ...	40	7.6
40	gb\|M26934.1\|ECOANSORA E.coli ansA-ORF1 gene pair, complete cds	40	7.6

>ref|XM_467700.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1959

 Score =  248 bits (125), Expect = 2e-62
 Identities = 287/341 (84%)
 Strand = Plus / Plus

                                                                        
Query: 216  cagaaatttatggggaaatctgagaatggcatgaactctttggagacaagggtccatggc 275
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 1558 cagaaatttatggggaaatctgagaatggcatgaattctttggagacaagggtacatgga 1617

                                                                        
Query: 276  ctagagatggcattggatgagatatcacgtgacctagcagtttcttcagaaaggatgtca 335
            || ||||||||||||||||| || || || ||  |||| |  || |||| |||||  |||
Sbjct: 1618 cttgagatggcattggatgaaatctcccgagatttagctgcctcgtcaggaaggacatca 1677

                                                                        
Query: 336  agcagtgaaccccgtgtgaacacctgttgcattctgagcccaaaattctggagaaggcat 395
            | ||| ||| | | ||| ||| | || |||||||||| |||||||||||||||  | |||
Sbjct: 1678 aacagcgaagctcatgtcaactcatgctgcattctgaacccaaaattctggaggcgtcat 1737

                                                                        
Query: 396  gatggtgttagaaactcctccagattttctgcctccagtgttccaaacagctcggagggg 455
            |||| |  |||| |||| || || ||||||| |||   || || |||||| |||||||||
Sbjct: 1738 gatgctagtagatactcttctagtttttctgtctctgatggtcgaaacagttcggagggg 1797

                                                                        
Query: 456  agcagaacttcttacaagtgggaaaggcagaaatttggagttcagggtggatttgtcacc 515
            |||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||
Sbjct: 1798 agcagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcacc 1857

                                                     
Query: 516  aacccgttagccgagccaaatatttcttctgttgggagaac 556
            ||||||||||| ||||| || ||||| |||| || ||||||
Sbjct: 1858 aacccgttagctgagccgaacatttcgtctgctgcgagaac 1898



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 119/144 (82%)
 Strand = Plus / Plus

                                                                        
Query: 75   ggtggtaacttggaagagatttctgaggttgaaggtggttcagagagggctcagtcaggc 134
            ||||||||| ||||||| ||||||||| |||  || || |||||||||  |||| |||| 
Sbjct: 1297 ggtggtaacatggaagaaatttctgagattggtggcggatcagagaggtttcagacaggt 1356

                                                                        
Query: 135  ctcaaagacgagggcttgtcagagatcaggacacagctgcttcagattgagaaacagcag 194
              |||||||||||| |||||||||||  || |||| |||||||||||||| || ||||||
Sbjct: 1357 tacaaagacgagggattgtcagagattcggtcacaactgcttcagattgaaaatcagcag 1416

                                    
Query: 195  agtggtttgcttgatcttctccag 218
            ||  |||| || |||||| |||||
Sbjct: 1417 agcagtttactagatcttatccag 1440

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  248 bits (125), Expect = 2e-62
 Identities = 287/341 (84%)
 Strand = Plus / Minus

                                                                            
Query: 216      cagaaatttatggggaaatctgagaatggcatgaactctttggagacaagggtccatggc 275
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 30950004 cagaaatttatggggaaatctgagaatggcatgaattctttggagacaagggtacatgga 30949945

                                                                            
Query: 276      ctagagatggcattggatgagatatcacgtgacctagcagtttcttcagaaaggatgtca 335
                || ||||||||||||||||| || || || ||  |||| |  || |||| |||||  |||
Sbjct: 30949944 cttgagatggcattggatgaaatctcccgagatttagctgcctcgtcaggaaggacatca 30949885

                                                                            
Query: 336      agcagtgaaccccgtgtgaacacctgttgcattctgagcccaaaattctggagaaggcat 395
                | ||| ||| | | ||| ||| | || |||||||||| |||||||||||||||  | |||
Sbjct: 30949884 aacagcgaagctcatgtcaactcatgctgcattctgaacccaaaattctggaggcgtcat 30949825

                                                                            
Query: 396      gatggtgttagaaactcctccagattttctgcctccagtgttccaaacagctcggagggg 455
                |||| |  |||| |||| || || ||||||| |||   || || |||||| |||||||||
Sbjct: 30949824 gatgctagtagatactcttctagtttttctgtctctgatggtcgaaacagttcggagggg 30949765

                                                                            
Query: 456      agcagaacttcttacaagtgggaaaggcagaaatttggagttcagggtggatttgtcacc 515
                |||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||
Sbjct: 30949764 agcagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcacc 30949705

                                                         
Query: 516      aacccgttagccgagccaaatatttcttctgttgggagaac 556
                ||||||||||| ||||| || ||||| |||| || ||||||
Sbjct: 30949704 aacccgttagctgagccgaacatttcgtctgctgcgagaac 30949664



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 119/144 (82%)
 Strand = Plus / Minus

                                                                            
Query: 75       ggtggtaacttggaagagatttctgaggttgaaggtggttcagagagggctcagtcaggc 134
                ||||||||| ||||||| ||||||||| |||  || || |||||||||  |||| |||| 
Sbjct: 30950985 ggtggtaacatggaagaaatttctgagattggtggcggatcagagaggtttcagacaggt 30950926

                                                                            
Query: 135      ctcaaagacgagggcttgtcagagatcaggacacagctgcttcagattgagaaacagcag 194
                  |||||||||||| |||||||||||  || |||| |||||||||||||| || ||||||
Sbjct: 30950925 tacaaagacgagggattgtcagagattcggtcacaactgcttcagattgaaaatcagcag 30950866

                                        
Query: 195      agtggtttgcttgatcttctccag 218
                ||  |||| || |||||| |||||
Sbjct: 30950865 agcagtttactagatcttatccag 30950842

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>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0516G10
          Length = 148937

 Score =  248 bits (125), Expect = 2e-62
 Identities = 287/341 (84%)
 Strand = Plus / Minus

                                                                        
Query: 216  cagaaatttatggggaaatctgagaatggcatgaactctttggagacaagggtccatggc 275
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 4960 cagaaatttatggggaaatctgagaatggcatgaattctttggagacaagggtacatgga 4901

                                                                        
Query: 276  ctagagatggcattggatgagatatcacgtgacctagcagtttcttcagaaaggatgtca 335
            || ||||||||||||||||| || || || ||  |||| |  || |||| |||||  |||
Sbjct: 4900 cttgagatggcattggatgaaatctcccgagatttagctgcctcgtcaggaaggacatca 4841

                                                                        
Query: 336  agcagtgaaccccgtgtgaacacctgttgcattctgagcccaaaattctggagaaggcat 395
            | ||| ||| | | ||| ||| | || |||||||||| |||||||||||||||  | |||
Sbjct: 4840 aacagcgaagctcatgtcaactcatgctgcattctgaacccaaaattctggaggcgtcat 4781

                                                                        
Query: 396  gatggtgttagaaactcctccagattttctgcctccagtgttccaaacagctcggagggg 455
            |||| |  |||| |||| || || ||||||| |||   || || |||||| |||||||||
Sbjct: 4780 gatgctagtagatactcttctagtttttctgtctctgatggtcgaaacagttcggagggg 4721

                                                                        
Query: 456  agcagaacttcttacaagtgggaaaggcagaaatttggagttcagggtggatttgtcacc 515
            |||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||
Sbjct: 4720 agcagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcacc 4661

                                                     
Query: 516  aacccgttagccgagccaaatatttcttctgttgggagaac 556
            ||||||||||| ||||| || ||||| |||| || ||||||
Sbjct: 4660 aacccgttagctgagccgaacatttcgtctgctgcgagaac 4620



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 119/144 (82%)
 Strand = Plus / Minus

                                                                        
Query: 75   ggtggtaacttggaagagatttctgaggttgaaggtggttcagagagggctcagtcaggc 134
            ||||||||| ||||||| ||||||||| |||  || || |||||||||  |||| |||| 
Sbjct: 5941 ggtggtaacatggaagaaatttctgagattggtggcggatcagagaggtttcagacaggt 5882

                                                                        
Query: 135  ctcaaagacgagggcttgtcagagatcaggacacagctgcttcagattgagaaacagcag 194
              |||||||||||| |||||||||||  || |||| |||||||||||||| || ||||||
Sbjct: 5881 tacaaagacgagggattgtcagagattcggtcacaactgcttcagattgaaaatcagcag 5822

                                    
Query: 195  agtggtttgcttgatcttctccag 218
            ||  |||| || |||||| |||||
Sbjct: 5821 agcagtttactagatcttatccag 5798

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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0684F11
          Length = 147731

 Score =  248 bits (125), Expect = 2e-62
 Identities = 287/341 (84%)
 Strand = Plus / Minus

                                                                          
Query: 216    cagaaatttatggggaaatctgagaatggcatgaactctttggagacaagggtccatggc 275
              ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 133581 cagaaatttatggggaaatctgagaatggcatgaattctttggagacaagggtacatgga 133522

                                                                          
Query: 276    ctagagatggcattggatgagatatcacgtgacctagcagtttcttcagaaaggatgtca 335
              || ||||||||||||||||| || || || ||  |||| |  || |||| |||||  |||
Sbjct: 133521 cttgagatggcattggatgaaatctcccgagatttagctgcctcgtcaggaaggacatca 133462

                                                                          
Query: 336    agcagtgaaccccgtgtgaacacctgttgcattctgagcccaaaattctggagaaggcat 395
              | ||| ||| | | ||| ||| | || |||||||||| |||||||||||||||  | |||
Sbjct: 133461 aacagcgaagctcatgtcaactcatgctgcattctgaacccaaaattctggaggcgtcat 133402

                                                                          
Query: 396    gatggtgttagaaactcctccagattttctgcctccagtgttccaaacagctcggagggg 455
              |||| |  |||| |||| || || ||||||| |||   || || |||||| |||||||||
Sbjct: 133401 gatgctagtagatactcttctagtttttctgtctctgatggtcgaaacagttcggagggg 133342

                                                                          
Query: 456    agcagaacttcttacaagtgggaaaggcagaaatttggagttcagggtggatttgtcacc 515
              |||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||
Sbjct: 133341 agcagaacttcttacaagtggggaaggcaaaagtttggagttcagggtggttttgtcacc 133282

                                                       
Query: 516    aacccgttagccgagccaaatatttcttctgttgggagaac 556
              ||||||||||| ||||| || ||||| |||| || ||||||
Sbjct: 133281 aacccgttagctgagccgaacatttcgtctgctgcgagaac 133241



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 119/144 (82%)
 Strand = Plus / Minus

                                                                          
Query: 75     ggtggtaacttggaagagatttctgaggttgaaggtggttcagagagggctcagtcaggc 134
              ||||||||| ||||||| ||||||||| |||  || || |||||||||  |||| |||| 
Sbjct: 134562 ggtggtaacatggaagaaatttctgagattggtggcggatcagagaggtttcagacaggt 134503

                                                                          
Query: 135    ctcaaagacgagggcttgtcagagatcaggacacagctgcttcagattgagaaacagcag 194
                |||||||||||| |||||||||||  || |||| |||||||||||||| || ||||||
Sbjct: 134502 tacaaagacgagggattgtcagagattcggtcacaactgcttcagattgaaaatcagcag 134443

                                      
Query: 195    agtggtttgcttgatcttctccag 218
              ||  |||| || |||||| |||||
Sbjct: 134442 agcagtttactagatcttatccag 134419

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>gb|AY106868.1| Zea mays PCO072630 mRNA sequence
          Length = 1321

 Score =  210 bits (106), Expect = 4e-51
 Identities = 334/409 (81%), Gaps = 2/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 138 aaagacgagggcttgtcagagatcaggacacagctgcttcagattgagaaacagcagagt 197
           ||||||||| |||||||||| || ||||| ||||| ||||||||||| || ||||| || 
Sbjct: 377 aaagacgagagcttgtcagaaataaggacgcagctccttcagattgaaaatcagcaaagc 436

                                                                       
Query: 198 ggtttgcttgatcttctccagaaatttatggggaaatctgagaatggcatgaactctttg 257
            |||| || |||||||||||||||||||||||||| || ||||| || |||   ||||||
Sbjct: 437 agtttactggatcttctccagaaatttatggggaagtccgagaacggtatgcgttctttg 496

                                                                       
Query: 258 gagacaagggtccatggcctagagatggcattggatgagatatcacgtgacctagcagtt 317
           |||||||| || ||||| || |||||||| ||||||||||| || |||||  | ||  | 
Sbjct: 497 gagacaagagtgcatgggctggagatggctttggatgagatctctcgtgatttggccttc 556

                                                                       
Query: 318 tcttcagaaaggatgtcaagcagtgaaccccgtgtgaacacctgttgcattctgagccca 377
           ||||||| ||||||||||||||| || ||   ||  || || || ||||||| |||||||
Sbjct: 557 tcttcaggaaggatgtcaagcagagagcctgatgcaaagacgtgctgcattccgagccca 616

                                                                       
Query: 378 aaattctggagaaggcatgatggtgttagaaactcctccagattttctgcctccagtgtt 437
           |||||||||||||||||  |||||| |||    ||||| || ||||||| |||    |  
Sbjct: 617 aaattctggagaaggcacaatggtggtaggtcttcctcaaggttttctgtctcagacgca 676

                                                                       
Query: 438 ccaaacagctcggaggggagcagaacttcttacaagtgggaaaggcagaaatttggagtt 497
            |||||||||| || |||||||||||||||||||||||||| |||||||  |||||  ||
Sbjct: 677 gcaaacagctcagatgggagcagaacttcttacaagtgggagaggcagaggtttgggctt 736

                                                            
Query: 498 cagggtggatttgtcaccaacccgttagccgagccaaatatttcttctg 546
           |||||||  |||||||| ||||| ||||||||||| || ||||| ||||
Sbjct: 737 cagggtg--tttgtcacaaacccattagccgagccgaacatttcatctg 783



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 54  cgagttgttccgtatgaatgtggtggtaacttggaagagatttctgaggttgaaggt 110
           ||||||||||| || ||  |||||||||| |||||||||||||| || |||||||||
Sbjct: 296 cgagttgttccatacgagggtggtggtaatttggaagagatttcagaagttgaaggt 352

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  103 bits (52), Expect = 6e-19
 Identities = 78/86 (90%), Gaps = 3/86 (3%)
 Strand = Plus / Plus

                                                                           
Query: 450     gaggggagcagaacttcttacaagtgggaaaggcagaaatttggagttcagggtggattt 509
               |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||   ||
Sbjct: 7544710 gaggagagcagaacttcttacaagtgggagaggcagaagtttggagttcagggtg---tt 7544766

                                         
Query: 510     gtcaccaacccgttagccgagccaaa 535
               ||||||||||| ||||| ||||||||
Sbjct: 7544767 gtcaccaacccattagcagagccaaa 7544792



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 148/185 (80%), Gaps = 3/185 (1%)
 Strand = Plus / Plus

                                                                           
Query: 216     cagaaatttatggggaaatctgagaatggcatgaactctttggagacaagggtccatggc 275
               ||||||||||||||||  ||| ||||||| ||    || ||||||||| ||||  | || 
Sbjct: 7544479 cagaaatttatggggagctctcagaatgggatccgttccttggagacacgggtgaacgga 7544538

                                                                           
Query: 276     ctagagatggcattggatgagatatcacgtgacctagcagtttcttcagaaaggatgtca 335
               || ||||||||| |||||||||| || |||||  | || | |||||||| ||||||| ||
Sbjct: 7544539 ctggagatggcactggatgagatctcccgtgatttggctgcttcttcaggaaggatgcca 7544598

                                                                           
Query: 336     agcagtgaaccccgtgtgaacacctgttgcattctgagcccaaaattctggagaaggcat 395
               |||||||||||   | ||||   ||| ||||| || ||||| |||||||||||||| |||
Sbjct: 7544599 agcagtgaacctgatatgaa---ctgctgcatccttagcccgaaattctggagaagacat 7544655

                    
Query: 396     gatgg 400
               |||||
Sbjct: 7544656 gatgg 7544660



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                           
Query: 125     tcagtcaggcctcaaagacgagggcttgtcagagatcaggacacagctgcttcagattga 184
               ||||||||| | ||| || |||| | ||||| |||||||||  |||||  ||||||||||
Sbjct: 7543552 tcagtcaggtcacaaggaagaggacctgtcaaagatcaggatgcagcttgttcagattga 7543611

                          
Query: 185     gaaacagcaga 195
               ||| |||||||
Sbjct: 7543612 gaatcagcaga 7543622

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>dbj|AP004725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0412C04
          Length = 146849

 Score =  103 bits (52), Expect = 6e-19
 Identities = 78/86 (90%), Gaps = 3/86 (3%)
 Strand = Plus / Plus

                                                                          
Query: 450    gaggggagcagaacttcttacaagtgggaaaggcagaaatttggagttcagggtggattt 509
              |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||   ||
Sbjct: 104641 gaggagagcagaacttcttacaagtgggagaggcagaagtttggagttcagggtg---tt 104697

                                        
Query: 510    gtcaccaacccgttagccgagccaaa 535
              ||||||||||| ||||| ||||||||
Sbjct: 104698 gtcaccaacccattagcagagccaaa 104723



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 148/185 (80%), Gaps = 3/185 (1%)
 Strand = Plus / Plus

                                                                          
Query: 216    cagaaatttatggggaaatctgagaatggcatgaactctttggagacaagggtccatggc 275
              ||||||||||||||||  ||| ||||||| ||    || ||||||||| ||||  | || 
Sbjct: 104410 cagaaatttatggggagctctcagaatgggatccgttccttggagacacgggtgaacgga 104469

                                                                          
Query: 276    ctagagatggcattggatgagatatcacgtgacctagcagtttcttcagaaaggatgtca 335
              || ||||||||| |||||||||| || |||||  | || | |||||||| ||||||| ||
Sbjct: 104470 ctggagatggcactggatgagatctcccgtgatttggctgcttcttcaggaaggatgcca 104529

                                                                          
Query: 336    agcagtgaaccccgtgtgaacacctgttgcattctgagcccaaaattctggagaaggcat 395
              |||||||||||   | ||||   ||| ||||| || ||||| |||||||||||||| |||
Sbjct: 104530 agcagtgaacctgatatgaa---ctgctgcatccttagcccgaaattctggagaagacat 104586

                   
Query: 396    gatgg 400
              |||||
Sbjct: 104587 gatgg 104591



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                          
Query: 125    tcagtcaggcctcaaagacgagggcttgtcagagatcaggacacagctgcttcagattga 184
              ||||||||| | ||| || |||| | ||||| |||||||||  |||||  ||||||||||
Sbjct: 103483 tcagtcaggtcacaaggaagaggacctgtcaaagatcaggatgcagcttgttcagattga 103542

                         
Query: 185    gaaacagcaga 195
              ||| |||||||
Sbjct: 103543 gaatcagcaga 103553

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>gb|BT018158.1| Zea mays clone EL01N0556B09.c mRNA sequence
          Length = 1043

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 105/129 (81%), Gaps = 3/129 (2%)
 Strand = Plus / Plus

                                                                       
Query: 54  cgagttgttccgtatgaatgtggtggtaacttggaagagatttctgaggttgaaggtggt 113
           |||||||||| ||| ||| |||||||||| |||||| ||||||  || ||||||||||| 
Sbjct: 351 cgagttgttctgtacgaaggtggtggtaatttggaatagattttagaagttgaaggtgga 410

                                                                       
Query: 114 tcagagagggctcagtcaggcctcaaagacgagggcttgtcagagatcaggacacagctg 173
           ||||| |   | ||  |||  | |||||| ||| |||||||||| || ||||||||||| 
Sbjct: 411 tcagaaa---cgcatgcagttcacaaagatgagagcttgtcagaaataaggacacagctc 467

                    
Query: 174 cttcagatt 182
           |||||||||
Sbjct: 468 cttcagatt 476

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>gb|AY111143.1| Zea mays CL50626_1 mRNA sequence
          Length = 627

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 363 tgcattctgagcccaaaattctggagaaggcatga 397
           ||||||||||||||||| |||||||||||||||||
Sbjct: 611 tgcattctgagcccaaagttctggagaaggcatga 577



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 72/86 (83%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                       
Query: 450 gaggggagcagaacttcttacaagtgggaaag---gcagaaatttggagttcagggtgga 506
           |||| |||||||| | ||||||||||||| ||   ||||||||||||||| || ||||| 
Sbjct: 524 gaggagagcagaagtccttacaagtgggacagacagcagaaatttggagtccatggtggt 465

                                     
Query: 507 tttgtcaccaacccgttagccgagcc 532
           |||||| |||| || ||||| |||||
Sbjct: 464 tttgtccccaatcccttagcagagcc 439

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>gb|AC100149.12| Mus musculus chromosome 10, clone RP23-43F3, complete sequence
          Length = 184927

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 478 aaaggcagaaatttggagttcaggg 502
           |||||||||||||||||||||||||
Sbjct: 216 aaaggcagaaatttggagttcaggg 192

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>gb|AC159380.8| Mus musculus 10 BAC RP24-460M18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 196877

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 478    aaaggcagaaatttggagttcaggg 502
              |||||||||||||||||||||||||
Sbjct: 171244 aaaggcagaaatttggagttcaggg 171220

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>gb|AC146896.15| Mus musculus chromosome X clone xcat-28-97f16, complete sequence
          Length = 163375

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 485   gaaatttggagttcagggtgg 505
             |||||||||||||||||||||
Sbjct: 54451 gaaatttggagttcagggtgg 54431

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>gb|AC159286.3| Mus musculus BAC clone RP23-314E22 from chromosome 14, complete
             sequence
          Length = 210984

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   ttcagattgagaaacagcaga 195
             |||||||||||||||||||||
Sbjct: 48418 ttcagattgagaaacagcaga 48438

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>gb|AC123067.4| Mus musculus BAC clone RP23-20M6 from chromosome 12, complete sequence
          Length = 200251

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    ggaagagatttctgaggttga 106
             |||||||||||||||||||||
Sbjct: 48684 ggaagagatttctgaggttga 48704

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>gb|AC011283.3| Homo sapiens BAC clone CTD-2016A9 from 7, complete sequence
          Length = 68326

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 171   ctgcttcagattgagaaacagcaga 195
             |||||||||||||| ||||||||||
Sbjct: 62448 ctgcttcagattgaaaaacagcaga 62472

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>gb|AC093447.17| Mus musculus strain 129/Sv clone ct7-25g12 map X, complete sequence
          Length = 188211

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 485   gaaatttggagttcagggtgg 505
             |||||||||||||||||||||
Sbjct: 79025 gaaatttggagttcagggtgg 79005

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>emb|AL732391.7| Mouse DNA sequence from clone RP23-364H13 on chromosome X, complete
              sequence
          Length = 173841

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 485    gaaatttggagttcagggtgg 505
              |||||||||||||||||||||
Sbjct: 106992 gaaatttggagttcagggtgg 106972

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>ref|XM_423478.1| PREDICTED: Gallus gallus similar to ovomacroglobulin, ovostatin
            (LOC425757), mRNA
          Length = 4818

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 239  gaatggcatgaactctttggagac 262
            |||||||||||||| |||||||||
Sbjct: 3786 gaatggcatgaactgtttggagac 3809

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>ref|XM_614120.2| PREDICTED: Bos taurus similar to Probable cation-transporting ATPase
            13A1, transcript variant 1 (LOC534369), mRNA
          Length = 3812

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   tccgtatgaatgtggtggta 81
            ||||||||||||||||||||
Sbjct: 2015 tccgtatgaatgtggtggta 1996

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>ref|XM_881097.1| PREDICTED: Bos taurus similar to Probable cation-transporting
           ATPase 13A1, transcript variant 8 (LOC534369), mRNA
          Length = 2183

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tccgtatgaatgtggtggta 81
           ||||||||||||||||||||
Sbjct: 386 tccgtatgaatgtggtggta 367

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>gb|AC073201.6| Homo sapiens BAC clone RP11-297M20 from 7, complete sequence
          Length = 60776

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 225   atggggaaatctgagaatggcatg 248
             |||||||||||| |||||||||||
Sbjct: 14658 atggggaaatctaagaatggcatg 14635

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>emb|AL356753.16| Human DNA sequence from clone RP11-481G8 on chromosome 10 Contains the
             5'end of a novel gene containing FLJ40930, gene FLJ35875,
             the RAI17 gene for retinoic acid induced 17, a novel gene
             and two CpG islands, complete sequence
          Length = 183460

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   cctccagattttctgcctcc 431
             ||||||||||||||||||||
Sbjct: 95868 cctccagattttctgcctcc 95887

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>gb|AC098563.6| Rattus norvegicus 1 BAC CH230-123A15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 250414

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 484   agaaatttggagttcagggtggat 507
             |||||||||||| |||||||||||
Sbjct: 79173 agaaatttggaggtcagggtggat 79150

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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      ttggaagagatttctgaggt 103
               ||||||||||||||||||||
Sbjct: 1850671 ttggaagagatttctgaggt 1850652

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>gb|AC025029.16| Homo sapiens 3 BAC RP11-442C9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92601

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   tgtgaacacctgttgcattc 369
             ||||||||||||||||||||
Sbjct: 64309 tgtgaacacctgttgcattc 64328

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>emb|AL035443.4|HS137H15 Human DNA sequence from clone RP1-137H15 on chromosome Xq26.2-27.2
             Contains a novel gene, the ZIC3 gene for Zic family member
             3 heterotaxy (odd-paired homolog, Drosophila) and four CpG
             islands, complete sequence
          Length = 109339

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   ctccagaaatttatggggaa 232
             ||||||||||||||||||||
Sbjct: 89725 ctccagaaatttatggggaa 89744

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>emb|AL604066.9| Mouse DNA sequence from clone RP23-174M12 on chromosome 11 Contains the
              3' end of a novel gene, the Mnt gene for max binding
              protein, two novel genes, the  Srr gene for serine
              racemase, the 5' end of a novel gene and five CpG islands,
              complete sequence
          Length = 184151

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    aaaggcagaaatttggagtt 497
              ||||||||||||||||||||
Sbjct: 145408 aaaggcagaaatttggagtt 145389

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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      ttggaagagatttctgaggt 103
               ||||||||||||||||||||
Sbjct: 1854361 ttggaagagatttctgaggt 1854342

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>gb|AC010677.4| Homo sapiens chromosome 7 clone CTD-2304L4, complete sequence
          Length = 112659

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   tctgcctccagtgttccaaa 442
             ||||||||||||||||||||
Sbjct: 23297 tctgcctccagtgttccaaa 23278

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>gb|AC155722.9| Mus musculus 6 BAC RP24-204J8 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 198481

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   gatcaggacacagctgcttc 177
             ||||||||||||||||||||
Sbjct: 43476 gatcaggacacagctgcttc 43495

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>gb|AC158653.7| Mus musculus 6 BAC RP23-418F10 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 185818

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    gatcaggacacagctgcttc 177
              ||||||||||||||||||||
Sbjct: 165087 gatcaggacacagctgcttc 165106

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>gb|AC079602.15| Homo sapiens 12 BAC RP11-216P16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172008

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 465    tcttacaagtgggaaaggcagaaa 488
              |||||| |||||||||||||||||
Sbjct: 102749 tcttaccagtgggaaaggcagaaa 102772

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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    gagatggcattggatgagat 298
              ||||||||||||||||||||
Sbjct: 420165 gagatggcattggatgagat 420184

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>gb|AC157825.3| Mus musculus BAC clone RP23-230M23 from chromosome 16, complete sequence
          Length = 207864

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    tgtcagagatcaggacacag 170
              ||||||||||||||||||||
Sbjct: 116300 tgtcagagatcaggacacag 116281

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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      ttggaagagatttctgaggt 103
               ||||||||||||||||||||
Sbjct: 2528153 ttggaagagatttctgaggt 2528134

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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      ttggaagagatttctgaggt 103
               ||||||||||||||||||||
Sbjct: 2452950 ttggaagagatttctgaggt 2452931

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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 84      ttggaagagatttctgaggt 103
               ||||||||||||||||||||
Sbjct: 1376938 ttggaagagatttctgaggt 1376957

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>emb|AL805907.5| Mouse DNA sequence from clone RP23-262M20 on chromosome X, complete
              sequence
          Length = 221439

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    cagtttcttcagaaaggatg 332
              ||||||||||||||||||||
Sbjct: 202425 cagtttcttcagaaaggatg 202444

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>emb|AJ223837.1|MMU223837 Mus musculus Eef1a2 gene (mutated gene from wasted mice)
          Length = 18909

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   gcagaaatttggagttcagg 501
             ||||||||||||||||||||
Sbjct: 11101 gcagaaatttggagttcagg 11082

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>gb|M26934.1|ECOANSORA E.coli ansA-ORF1 gene pair, complete cds
          Length = 2156

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   ttggaagagatttctgaggt 103
            ||||||||||||||||||||
Sbjct: 1900 ttggaagagatttctgaggt 1881


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,617,594
Number of Sequences: 3902068
Number of extensions: 5617594
Number of successful extensions: 142332
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142035
Number of HSP's gapped (non-prelim): 286
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result