ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5a14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)... 32 2.1
2EGR4_HUMAN (Q05215) Early growth response protein 4 (EGR-4) (AT133) 31 3.6
3GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge... 30 6.2
4SORC3_MOUSE (Q8VI51) VPS10 domain-containing receptor SorCS3 pre... 30 8.1
5NRFA_PASMU (Q9CPL4) Cytochrome c-552 precursor (EC 1.7.2.2) (Amm... 30 8.1

>BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)|
           (Beta-D-glucoside glucohydrolase) (Fragment)
          Length = 192

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 235 VMDWHSGDAADGVAMLSPATMPKVVPSET-GTILDGSWPEHGALEAALWS 89
           ++ WH GDA   V  ++ A    +V   T G I+  +W EH  ++A +WS
Sbjct: 70  LLAWHDGDAL--VQAVADANENTIVAVNTVGAIITEAWIEHPNVKAVVWS 117



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>EGR4_HUMAN (Q05215) Early growth response protein 4 (EGR-4) (AT133)|
          Length = 486

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = -3

Query: 220 SGDAADGVAMLSPATMPKVVPSETGTILDGSWPEHGALEAALWS-------CATQSTPRR 62
           SGD AD   +  PA  P    S +G+    + PEH     AL++        A    P  
Sbjct: 60  SGDLADSCFLEGPAPTPPPGLSYSGSFFIQAVPEHPHDPEALFNLMSGVLGLAPFPGPEA 119

Query: 61  LASRGTLKAPVPSRAPTAL 5
            ASR  L AP P+ +   L
Sbjct: 120 AASRSPLDAPFPAGSDALL 138



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>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 96  SAASNAPCSGQEPSKIVPVSEGTTFGIVAGDNIATPSAASPECQSMTLCGP 248
           S   +AP   Q+P+   PV++G   G  A D+ A+P+ A     +  L GP
Sbjct: 670 SVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQIPAAAPLKGP 720



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>SORC3_MOUSE (Q8VI51) VPS10 domain-containing receptor SorCS3 precursor|
          Length = 1219

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -3

Query: 193 MLSPATMPKVVPSETGTILDGSWPEH--GALEAALWSCATQSTPRRLASRGTLKAPVPSR 20
           ++SPA+ P V+P       +  WPE    A  AA     ++  P   ASRG ++      
Sbjct: 46  LVSPASRPPVLPPLLPRAAENRWPEELASARRAAAPRRRSRLEPLSQASRGEIRTEAAGM 105

Query: 19  AP 14
           +P
Sbjct: 106 SP 107



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>NRFA_PASMU (Q9CPL4) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming|
           cytochrome c nitrite reductase) (Cytochrome c nitrite
           reductase)
          Length = 510

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 124 PEHGALEAALWSCATQSTPRRLASRG 47
           P+ G +  A WSC +   PR +A RG
Sbjct: 143 PDAGPMPMACWSCKSPDVPRLIAERG 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,220,875
Number of Sequences: 219361
Number of extensions: 1162684
Number of successful extensions: 5271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5266
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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