ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4l13 |
|---|---|
| Clone Library Name | barley_pub |
>PPE01_MYCTU (Q10892) Hypothetical PPE-family protein PPE1| Length = 463 Score = 32.3 bits (72), Expect = 0.95 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2 Query: 287 PGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGV 165 PG +PPTS+P +++ V A PG VPG+ GV Sbjct: 304 PGGSPPTSNPAPAAPSSNSVGSASAAPGISYAVPGLAPPGV 344
>CHEB3_PSEAE (Q9HXT8) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 335 Score = 32.3 bits (72), Expect = 0.95 Identities = 24/62 (38%), Positives = 30/62 (48%) Frame = -2 Query: 314 RLVCVGGDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVG 135 RLV +G G P S VL + + AVVL H+D V G+ L E +LPV Sbjct: 152 RLVAIGASAGG---PASLAVLLKQLPASFNAAVVLVQHVDEVFAAGMAEWLASESKLPVR 208 Query: 134 LA 129 LA Sbjct: 209 LA 210
>AL1A1_RAT (P51647) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = -2 Query: 296 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 117 G+T V P P+ + AS + EA PG +++VPG G + + V Sbjct: 186 GNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTG 245 Query: 116 IAQVAAIALRPQSDAAGK 63 QV + +AAGK Sbjct: 246 STQVGKLI----KEAAGK 259
>AL1A1_MOUSE (P24549) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = -2 Query: 296 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 117 G+T V P P+ + AS + EA PG +++VPG G + + V Sbjct: 186 GNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTG 245 Query: 116 IAQVAAIALRPQSDAAGK 63 QV + +AAGK Sbjct: 246 STQVGKLI----KEAAGK 259
>EFTS_ZYMMO (Q9X5E8) Elongation factor Ts (EF-Ts)| Length = 307 Score = 31.2 bits (69), Expect = 2.1 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Frame = -2 Query: 290 TPGVAPPTSHPVLTVVAASDVHEAVVLPG-HLDVVPGVGVNGVL-TVELQLP------VG 135 T +A + L A +V VV+P H V PGVG GVL +E + P +G Sbjct: 126 TANIATIGENQALRRAALLEVENGVVVPYIHNQVAPGVGKIGVLVALESEAPSDFLESLG 185 Query: 134 LAVLVHIAQVAAIALRPQS--DAA 69 + +H+A +AL S DAA Sbjct: 186 KQIAMHVAAATPLALDEDSLDDAA 209
>CHB1_LYMDI (P43515) Chorion class B protein Ld10 precursor| Length = 191 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 302 VGGDTPGVAPPTSHPVLTVVAASDVHEAVV-LPGHLDVVPGVGVNGVL 162 +GG P + PV VVA+ +V+E ++ G L V VGV GVL Sbjct: 78 IGGGLPVSSASAIAPVGLVVASENVYEGILAAAGELPFVGTVGVEGVL 125
>VNS1_AHSV6 (P87505) Nonstructural protein NS1| Length = 548 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -2 Query: 215 VLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVHIAQVAAIALRPQSDAAGKFYFFYHS 42 ++ G L V P G NG + L LP+ + V++ + + A +R AA F F H+ Sbjct: 196 LIEGRLPVCPYTGANGRINAVLHLPLEMEVIMAVQENATQLMR---RAAQDFKFITHA 250
>VNS1_AHSV4 (Q03068) Nonstructural protein NS1 (Hydrophobic tubular protein)| Length = 548 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -2 Query: 215 VLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVHIAQVAAIALRPQSDAAGKFYFFYHS 42 ++ G L V P G NG + L LP+ + V++ + + A +R AA F F H+ Sbjct: 196 LIEGRLPVCPYTGANGRINAVLHLPLEMEVIMAVQENATQLMR---RAAQDFKFITHA 250
>AL1A1_MACFA (Q8HYE4) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/78 (25%), Positives = 33/78 (42%) Frame = -2 Query: 296 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 117 G+T V P P+ + AS + EA PG +++VPG G + + + Sbjct: 186 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTG 245 Query: 116 IAQVAAIALRPQSDAAGK 63 +V + +AAGK Sbjct: 246 STEVGKLI----KEAAGK 259
>AL1A1_HUMAN (P00352) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/78 (25%), Positives = 33/78 (42%) Frame = -2 Query: 296 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 117 G+T V P P+ + AS + EA PG +++VPG G + + + Sbjct: 186 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTG 245 Query: 116 IAQVAAIALRPQSDAAGK 63 +V + +AAGK Sbjct: 246 STEVGKLI----KEAAGK 259
>AL1A1_RABIT (Q8MI17) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 496 Score = 30.0 bits (66), Expect = 4.7 Identities = 20/78 (25%), Positives = 33/78 (42%) Frame = -2 Query: 296 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 117 G+T V P P+ + AS + EA PG +++VPG G + + + Sbjct: 182 GNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTG 241 Query: 116 IAQVAAIALRPQSDAAGK 63 +V + +AAGK Sbjct: 242 STEVGKLI----KEAAGK 255
>AL1A4_RAT (P13601) Aldehyde dehydrogenase, cytosolic 1 (EC 1.2.1.3) (ALDH| class 1) (ALHDII) (ALDH-E1) (Aldehyde dehydrogenase family 1 member A4) Length = 500 Score = 30.0 bits (66), Expect = 4.7 Identities = 21/78 (26%), Positives = 33/78 (42%) Frame = -2 Query: 296 GDTPGVAPPTSHPVLTVVAASDVHEAVVLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVH 117 G+T V P P+ + AS + EA PG ++VVPG G + + + Sbjct: 186 GNTVIVKPAEQTPLTALYMASLIKEAGFPPGVVNVVPGYGSTAGAAISSHMDIDKVSFTG 245 Query: 116 IAQVAAIALRPQSDAAGK 63 +V + +AAGK Sbjct: 246 STEVGKLI----KEAAGK 259
>PORF_PSEFL (P37726) Outer membrane porin F precursor (Root adhesin)| Length = 326 Score = 30.0 bits (66), Expect = 4.7 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Frame = -2 Query: 518 GGFDDTHAWSSVILGEGHAPRRLSSLAIAGADEPNGHHRFMAVLSGGGGCDCDDELNQGT 339 GGF H + +GH+ R S+LAIAGA + F + G + D L+ G Sbjct: 115 GGFG--HQSRGNVKADGHSGRDQSTLAIAGA---GVKYYFTNNVYARAGVEADYALDNGK 169 Query: 338 VGVGQVFFRLVCVGGDTPGVAP-PTSHPVLTVVAASDVHEAVVLPGHLDV 192 + V GG+ AP PT P + A V+ LDV Sbjct: 170 WDYSALVGLGVNFGGNAGAAAPAPTPAPAPEPTPEPEAPVAQVVRVELDV 219
>CXI_CONCE (P69494) I-superfamily conotoxin precursor| Length = 67 Score = 30.0 bits (66), Expect = 4.7 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -1 Query: 264 PPSTYGCSGIGCARGRCASGTLGRRTWCR 178 PP Y + C RGRC SG WCR Sbjct: 31 PPGVYCTRHLPCCRGRCCSG------WCR 53
>KCNQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 669 Score = 29.6 bits (65), Expect = 6.1 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = -2 Query: 413 GHHRFMAVLSGGGG----CDCDDELNQGTVGVGQVFFRLVCVGGDTPGVAPPTSHPVLTV 246 G R + G G C EL +G G V+ + G PG+APP S PV V Sbjct: 16 GWGRLLGARRGSAGLAKKCPFSLELAEGGPTGGTVYAPIAPTGA--PGLAPPMSPPVSPV 73 Query: 245 VAASDV 228 A +D+ Sbjct: 74 PAPADL 79
>VNS1_AHSV9 (Q85967) Nonstructural protein NS1| Length = 548 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -2 Query: 215 VLPGHLDVVPGVGVNGVLTVELQLPVGLAVLVHIAQVAAIALRPQSDAAGKFYFFYHS 42 ++ G L V P GVN + L LP+ + V++ + + A +R AA F F H+ Sbjct: 196 LIEGRLPVCPYTGVNSRINAVLHLPLEMEVIMAVQENATQLMR---RAAQDFKFITHA 250
>YAGX_ECOLI (P77802) Hypothetical protein yagX precursor| Length = 841 Score = 29.3 bits (64), Expect = 8.0 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%) Frame = +3 Query: 141 RQLQLNGKDT---INPYTRYDVQVSRKHNGLVHIRCRYNRKYWVARRRGDAWCIAADADE 311 R LNGK ++PY RY+V++ N L RK + G+ I E Sbjct: 687 RIFPLNGKRNYLPLSPYGRYEVELQNSKNSLDSYDIVSGRKSRLTLYPGNVAVI-----E 741 Query: 312 PEEDLTNPNCTLIKLIVTVTAAAAAEDG 395 PE +K +VTV+ AEDG Sbjct: 742 PE----------VKQMVTVSGRIRAEDG 759
>PIGR_HUMAN (P01833) Polymeric-immunoglobulin receptor precursor (Poly-Ig| receptor) (PIGR) (Hepatocellular carcinoma-associated protein TB6) [Contains: Secretory component] Length = 764 Score = 29.3 bits (64), Expect = 8.0 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 11/107 (10%) Frame = +3 Query: 228 HIRCRYN--RKYWVARRRGDAWCIAADADEPEEDLTN--PNCTLIKLIVTVTAAA----- 380 H C+++ KYW + + + P + N N L+ L + + A Sbjct: 483 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY 542 Query: 381 --AAEDGHESVMTVRFVGAGDGKAGKATRRMTFAKDDAAPCMRVVEA 515 + GH T A + + +R ++ AK DAAP +V+++ Sbjct: 543 WCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDS 589
>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein| 5.5) (Ultrahigh sulfur keratin-associated protein 5.5) (Keratin-associated protein 5-11) (Keratin-associated protein 5.11) Length = 221 Score = 29.3 bits (64), Expect = 8.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 249 GCSGIGCARGRCASGTLGRRTWCRG 175 GC G+G G C SG GR + C G Sbjct: 13 GCGGLGSGCGGCGSGCGGRGSGCGG 37 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,377,826 Number of Sequences: 219361 Number of extensions: 1494129 Number of successful extensions: 5290 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5023 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5285 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
