ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4l08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
2emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4,... 40 1.3
3gb|AC169501.2| Mus musculus BAC clone RP24-445O18 from chromosom... 38 5.3
4ref|XM_879246.1| PREDICTED: Bos taurus similar to Beta-1,4-galac... 38 5.3
5gb|AC109364.6| Mus musculus BAC clone RP23-127N24 from chromosom... 38 5.3

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 12       agtggcagaaaagcagccggcaaa 35
                ||||||||||||||||| ||||||
Sbjct: 30330431 agtggcagaaaagcagcaggcaaa 30330454



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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    agtggcagaaaagcagccggcaaa 35
             ||||||||||||||||| ||||||
Sbjct: 80327 agtggcagaaaagcagcaggcaaa 80350



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>gb|AC169501.2| Mus musculus BAC clone RP24-445O18 from chromosome 17, complete sequence
          Length = 202078

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 12     agtggcagaaaagcagccggcaa 34
              ||||| |||||||||||||||||
Sbjct: 150461 agtgggagaaaagcagccggcaa 150483



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>ref|XM_879246.1| PREDICTED: Bos taurus similar to Beta-1,4-galactosyltransferase 2
          (Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2)
          (UDP-galactose:beta-N-acetylglucosamine
          beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
          beta-1,4-galactosyltransferase 2), transcript variant 4
          (LOC513759), mRNA
          Length = 1647

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 2  acagtggtcaagtggcaga 20
          |||||||||||||||||||
Sbjct: 61 acagtggtcaagtggcaga 79



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>gb|AC109364.6| Mus musculus BAC clone RP23-127N24 from chromosome 17, complete
             sequence
          Length = 198838

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 12    agtggcagaaaagcagccggcaa 34
             ||||| |||||||||||||||||
Sbjct: 63354 agtgggagaaaagcagccggcaa 63376


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 478,993
Number of Sequences: 3902068
Number of extensions: 478993
Number of successful extensions: 28207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28193
Number of HSP's gapped (non-prelim): 14
length of query: 115
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 94
effective length of database: 17,151,101,840
effective search space: 1612203572960
effective search space used: 1612203572960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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