ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4j21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470005.1| Oryza sativa (japonica cultivar-group), mRNA 192 2e-46
2dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 2e-46
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 182 2e-43
4gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 182 2e-43
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 182 2e-43
6dbj|AP004491.1| Lotus japonicus genomic DNA, chromosome 1, clone... 48 0.007
7gb|AC135957.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.030
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.030
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.030
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.030
11emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 46 0.030
12emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chr... 46 0.030
13gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 0.46
14gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, c... 40 1.8
15gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete... 40 1.8
16gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthe... 40 1.8
17emb|X74334.1|AEFHPG A.eutrophus fhp gene for flavohemoprotein 40 1.8
18ref|NM_058568.2| Caenorhabditis elegans Y39G10AR.17 (Y39G10AR.17... 40 1.8
19gb|AC025716.2| Caenorhabditis elegans cosmid Y39G10AR, complete ... 40 1.8
20emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 1.8
21ref|XM_482454.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
22gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.2
23gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 7.2
24gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 7.2
25emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in... 38 7.2
26emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 7.2
27dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 38 7.2
28gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 7.2
29dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
32dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 7.2
33dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 7.2
34dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
35dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
36ref|NM_208627.1| Eremothecium gossypii ACL130Cp (ACL130C), mRNA 38 7.2
37dbj|AK067163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.2
38gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 7.2
39gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 38 7.2
40dbj|AB070949.1| Streptomyces avermitilis polyene macrolide biosy... 38 7.2 
>ref|XM_470005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2070

 Score =  192 bits (97), Expect = 2e-46
 Identities = 127/137 (92%)
 Strand = Plus / Plus

                                                                       
Query: 14  ggggtacgggatccagtcgatgctcaaggatgggcacaagcatctctcgggcctcgacga 73
           |||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 126 ggggtacgggatccagtccatgctcaaggaggggcacaagcacctctccggcctcgatga 185

                                                                       
Query: 74  ggccgtcctgaagaacatcggcgccggccgcgagctctccgccatcacccgaacctccct 133
           ||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct: 186 ggccgtcctcaagaacatcgacgcctgccgcgagctctccgccatcacccgcacctccct 245

                            
Query: 134 tggccccaacggaatga 150
            ||||||||||||||||
Sbjct: 246 cggccccaacggaatga 262
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>dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D11, full
           insert sequence
          Length = 2070

 Score =  192 bits (97), Expect = 2e-46
 Identities = 127/137 (92%)
 Strand = Plus / Plus

                                                                       
Query: 14  ggggtacgggatccagtcgatgctcaaggatgggcacaagcatctctcgggcctcgacga 73
           |||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 126 ggggtacgggatccagtccatgctcaaggaggggcacaagcacctctccggcctcgatga 185

                                                                       
Query: 74  ggccgtcctgaagaacatcggcgccggccgcgagctctccgccatcacccgaacctccct 133
           ||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct: 186 ggccgtcctcaagaacatcgacgcctgccgcgagctctccgccatcacccgcacctccct 245

                            
Query: 134 tggccccaacggaatga 150
            ||||||||||||||||
Sbjct: 246 cggccccaacggaatga 262
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  182 bits (92), Expect = 2e-43
 Identities = 122/132 (92%)
 Strand = Plus / Plus

                                                                            
Query: 14       ggggtacgggatccagtcgatgctcaaggatgggcacaagcatctctcgggcctcgacga 73
                |||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 33288984 ggggtacgggatccagtccatgctcaaggaggggcacaagcacctctccggcctcgatga 33289043

                                                                            
Query: 74       ggccgtcctgaagaacatcggcgccggccgcgagctctccgccatcacccgaacctccct 133
                ||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct: 33289044 ggccgtcctcaagaacatcgacgcctgccgcgagctctccgccatcacccgcacctccct 33289103

                            
Query: 134      tggccccaacgg 145
                 |||||||||||
Sbjct: 33289104 cggccccaacgg 33289115
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score =  182 bits (92), Expect = 2e-43
 Identities = 122/132 (92%)
 Strand = Plus / Plus

                                                                         
Query: 14    ggggtacgggatccagtcgatgctcaaggatgggcacaagcatctctcgggcctcgacga 73
             |||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 45500 ggggtacgggatccagtccatgctcaaggaggggcacaagcacctctccggcctcgatga 45559

                                                                         
Query: 74    ggccgtcctgaagaacatcggcgccggccgcgagctctccgccatcacccgaacctccct 133
             ||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct: 45560 ggccgtcctcaagaacatcgacgcctgccgcgagctctccgccatcacccgcacctccct 45619

                         
Query: 134   tggccccaacgg 145
              |||||||||||
Sbjct: 45620 cggccccaacgg 45631
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  182 bits (92), Expect = 2e-43
 Identities = 122/132 (92%)
 Strand = Plus / Plus

                                                                            
Query: 14       ggggtacgggatccagtcgatgctcaaggatgggcacaagcatctctcgggcctcgacga 73
                |||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 33379494 ggggtacgggatccagtccatgctcaaggaggggcacaagcacctctccggcctcgatga 33379553

                                                                            
Query: 74       ggccgtcctgaagaacatcggcgccggccgcgagctctccgccatcacccgaacctccct 133
                ||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct: 33379554 ggccgtcctcaagaacatcgacgcctgccgcgagctctccgccatcacccgcacctccct 33379613

                            
Query: 134      tggccccaacgg 145
                 |||||||||||
Sbjct: 33379614 cggccccaacgg 33379625
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>dbj|AP004491.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17G08, TM0023,
             complete sequence
          Length = 91039

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 18    tacgggatccagtcgatgctcaaggatgggcacaagcatctctc 61
             ||||||||||| |||||||| ||||| || ||||| ||||||||
Sbjct: 77973 tacgggatccaatcgatgctgaaggaaggccacaaacatctctc 77930
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>gb|AC135957.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0037P02 map E61794SA, complete sequence
          Length = 131645

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 94    gcgccggccgcgagctctccgcc 116
             |||||||||||||||||||||||
Sbjct: 52257 gcgccggccgcgagctctccgcc 52235
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 94       gcgccggccgcgagctctccgcc 116
                |||||||||||||||||||||||
Sbjct: 24674916 gcgccggccgcgagctctccgcc 24674894
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 94      gcgccggccgcgagctctccgcc 116
               |||||||||||||||||||||||
Sbjct: 9499074 gcgccggccgcgagctctccgcc 9499052
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 94      gcgccggccgcgagctctccgcc 116
               |||||||||||||||||||||||
Sbjct: 9570771 gcgccggccgcgagctctccgcc 9570749
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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
             complete sequence
          Length = 133856

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 94    gcgccggccgcgagctctccgcc 116
             |||||||||||||||||||||||
Sbjct: 64439 gcgccggccgcgagctctccgcc 64417
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>emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chromosome 4, complete
              sequence
          Length = 187392

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 39     aaggatgggcacaagcatctctc 61
              |||||||||||||||||||||||
Sbjct: 104296 aaggatgggcacaagcatctctc 104318
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 88      acatcggcgccggccgcgagc 108
               |||||||||||||||||||||
Sbjct: 1476880 acatcggcgccggccgcgagc 1476860
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>gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, complete sequence
          Length = 188544

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    atgctcaaggatgggcacaa 52
             ||||||||||||||||||||
Sbjct: 72970 atgctcaaggatgggcacaa 72989
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>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     ggccgtcctgaagaacatcg 93
              ||||||||||||||||||||
Sbjct: 221751 ggccgtcctgaagaacatcg 221732
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>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and
              flanking regions
          Length = 116831

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     acatcggcgccggccgcgag 107
              ||||||||||||||||||||
Sbjct: 102048 acatcggcgccggccgcgag 102067
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>emb|X74334.1|AEFHPG A.eutrophus fhp gene for flavohemoprotein
          Length = 1490

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  ggccgtcctgaagaacatcg 93
           ||||||||||||||||||||
Sbjct: 389 ggccgtcctgaagaacatcg 408
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>ref|NM_058568.2| Caenorhabditis elegans Y39G10AR.17 (Y39G10AR.17) mRNA, complete cds
          Length = 1650

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  tcgggcctcgacgaggccgt 79
           ||||||||||||||||||||
Sbjct: 610 tcgggcctcgacgaggccgt 591
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>gb|AC025716.2| Caenorhabditis elegans cosmid Y39G10AR, complete sequence
          Length = 132558

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    tcgggcctcgacgaggccgt 79
             ||||||||||||||||||||
Sbjct: 99514 tcgggcctcgacgaggccgt 99533
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 63      ggcctcgacgaggccgtcct 82
               ||||||||||||||||||||
Sbjct: 2379747 ggcctcgacgaggccgtcct 2379766
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>ref|XM_482454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2178

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 99  ggccgcgagctctccgcca 117
           |||||||||||||||||||
Sbjct: 173 ggccgcgagctctccgcca 191
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>gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0010H19, complete sequence
          Length = 162902

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 94    gcgccggccgcgagctctccgcc 116
             |||||||||||||||||| ||||
Sbjct: 48834 gcgccggccgcgagctctacgcc 48812
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 86      gaacatcggcgccggccgc 104
               |||||||||||||||||||
Sbjct: 3359591 gaacatcggcgccggccgc 3359573
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 86     gaacatcggcgccggccgc 104
              |||||||||||||||||||
Sbjct: 398630 gaacatcggcgccggccgc 398612
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>emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in linkage group 17,
              complete sequence
          Length = 155951

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 119    cacccgaacctcccttggc 137
              |||||||||||||||||||
Sbjct: 114926 cacccgaacctcccttggc 114908
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 86     gaacatcggcgccggccgc 104
              |||||||||||||||||||
Sbjct: 208351 gaacatcggcgccggccgc 208333
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 1       tgccgacgatggtggggta 19
               |||||||||||||||||||
Sbjct: 4091874 tgccgacgatggtggggta 4091856
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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 92     cggcgccggccgcgagctc 110
              |||||||||||||||||||
Sbjct: 124871 cggcgccggccgcgagctc 124889
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 99       ggccgcgagctctccgcca 117
                |||||||||||||||||||
Sbjct: 20201790 ggccgcgagctctccgcca 20201808
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 94       gcgccggccgcgagctctccgcc 116
                ||||||||||||||||| |||||
Sbjct: 10936244 gcgccggccgcgagctccccgcc 10936266
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 94       gcgccggccgcgagctctccgcc 116
                |||||||||||||||||| ||||
Sbjct: 10365801 gcgccggccgcgagctctacgcc 10365779
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 63     ggcctcgacgaggccgtcc 81
              |||||||||||||||||||
Sbjct: 544530 ggcctcgacgaggccgtcc 544548
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 88      acatcggcgccggccgcga 106
               |||||||||||||||||||
Sbjct: 3163360 acatcggcgccggccgcga 3163378
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>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0028O21
          Length = 134543

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 94     gcgccggccgcgagctctccgcc 116
              ||||||||||||||||| |||||
Sbjct: 112619 gcgccggccgcgagctccccgcc 112641
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>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0077M12
          Length = 145337

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    ggccgcgagctctccgcca 117
             |||||||||||||||||||
Sbjct: 67576 ggccgcgagctctccgcca 67594
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>ref|NM_208627.1| Eremothecium gossypii ACL130Cp (ACL130C), mRNA
          Length = 951

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 92  cggcgccggccgcgagctc 110
           |||||||||||||||||||
Sbjct: 730 cggcgccggccgcgagctc 712
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>dbj|AK067163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096B06, full
           insert sequence
          Length = 2178

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 99  ggccgcgagctctccgcca 117
           |||||||||||||||||||
Sbjct: 173 ggccgcgagctctccgcca 191
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 90      atcggcgccggccgcgagc 108
               |||||||||||||||||||
Sbjct: 3188077 atcggcgccggccgcgagc 3188095
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 91      tcggcgccggccgcgagct 109
               |||||||||||||||||||
Sbjct: 1005436 tcggcgccggccgcgagct 1005454
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>dbj|AB070949.1| Streptomyces avermitilis polyene macrolide biosynthetic gene cluster
          Length = 78210

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    ggcctcgacgaggccgtcc 81
             |||||||||||||||||||
Sbjct: 20328 ggcctcgacgaggccgtcc 20310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 805,384
Number of Sequences: 3902068
Number of extensions: 805384
Number of successful extensions: 65373
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63504
Number of HSP's gapped (non-prelim): 1869
length of query: 150
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 129
effective length of database: 17,151,101,840
effective search space: 2212492137360
effective search space used: 2212492137360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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