Clone Information

BLAST Search Result

Clone Name	bags4j18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_193868.1\| Oryza sativa (japonica cultivar-group), predic...	628	e-177
2	dbj\|AK103410.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	628	e-177
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	230	4e-57
4	dbj\|AP003204.3\| Oryza sativa (japonica cultivar-group) genomic D...	230	4e-57
5	dbj\|AP003199.3\| Oryza sativa (japonica cultivar-group) genomic D...	230	4e-57
6	gb\|AY106222.1\| Zea mays PCO112886 mRNA sequence	202	1e-48
7	ref\|NM_111585.2\| Arabidopsis thaliana GTP binding AT3G07050 mRNA...	70	9e-09
8	gb\|AC016827.7\|ATAC016827 Arabidopsis thaliana chromosome III BAC...	70	9e-09
9	gb\|AY054687.1\| Arabidopsis thaliana putative GTPase (At3g07050; ...	70	9e-09
10	dbj\|AP004504.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	60	9e-06
11	ref\|XM_978505.1\| PREDICTED: Mus musculus guanine nucleotide bind...	52	0.002
12	ref\|XM_978471.1\| PREDICTED: Mus musculus guanine nucleotide bind...	52	0.002
13	ref\|XM_978436.1\| PREDICTED: Mus musculus guanine nucleotide bind...	52	0.002
14	ref\|XM_978588.1\| PREDICTED: Mus musculus guanine nucleotide bind...	52	0.002
15	ref\|XM_978541.1\| PREDICTED: Mus musculus guanine nucleotide bind...	52	0.002
16	ref\|XM_983225.1\| PREDICTED: Mus musculus guanine nucleotide bind...	52	0.002
17	gb\|BC057033.1\| Mus musculus guanine nucleotide binding protein-l...	52	0.002
18	gb\|BC020354.1\| Mus musculus guanine nucleotide binding protein-l...	52	0.002
19	ref\|NM_198110.1\| Mus musculus guanine nucleotide binding protein...	52	0.002
20	gb\|BC079653.1\| Mus musculus guanine nucleotide binding protein-l...	52	0.002
21	ref\|XM_538054.2\| PREDICTED: Canis familiaris similar to guanine ...	46	0.13
22	ref\|XM_808402.1\| Trypanosoma cruzi strain CL Brener GTP-binding ...	46	0.13
23	gb\|AC027134.4\|AC027134 Arabidopsis thaliana chromosome I BAC F13...	44	0.53
24	gb\|AC037471.12\| Homo sapiens chromosome 15, clone RP11-810K23, c...	42	2.1
25	gb\|AC127381.4\| Homo sapiens BAC clone RP11-1360M22 from UL, comp...	42	2.1
26	gb\|AC087386.7\| Homo sapiens chromosome 15, clone RP11-173D3, com...	42	2.1
27	gb\|AC140120.2\| Homo sapiens 3 BAC RP11-106F4 (Roswell Park Cance...	42	2.1
28	gb\|AC021585.7\| Homo sapiens chromosome , clone RP11-96F3, comple...	42	2.1
29	gb\|AC126335.16\| Homo sapiens chromosome 15, clone RP11-854K16, c...	42	2.1
30	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
31	gb\|AC127533.9\| Homo sapiens chromosome 15, clone RP11-1363O20, c...	42	2.1
32	gb\|AC134676.5\| Homo sapiens chromosome 15, clone CTD-2290E14, co...	42	2.1
33	dbj\|AP005300.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
34	dbj\|AP004747.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
35	dbj\|AP002002.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	2.1
36	emb\|AL805937.11\| Mouse DNA sequence from clone RP23-139B4 on chr...	42	2.1
37	gb\|AY710429.1\| Cryptococcus gattii strain E566 MATa locus, compl...	40	8.2
38	gb\|BT012773.1\| Lycopersicon esculentum clone 113752F, mRNA sequence	40	8.2
39	ref\|XM_652421.1\| Entamoeba histolytica HM-1:IMSS GTP-binding pro...	40	8.2
40	emb\|AL355316.12\| Human DNA sequence from clone RP11-82L9 on chro...	40	8.2
41	emb\|AL034343.17\|HS108C2 Human DNA sequence from clone RP1-108C2 ...	40	8.2
42	emb\|CR522870.1\| Desulfotalea psychrophila LSv54 chromosome	40	8.2
43	gb\|AC068112.5\| Homo sapiens chromosome 18, clone RP11-526H11, co...	40	8.2
44	dbj\|AP007157.1\| Aspergillus oryzae RIB40 genomic DNA, SC023	40	8.2
45	gb\|AE017282.2\| Methylococcus capsulatus str. Bath, complete genome	40	8.2
46	emb\|BX324202.9\| Zebrafish DNA sequence from clone CH211-158G9 in...	40	8.2
47	dbj\|AP006114.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	40	8.2

>ref|NM_193868.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1812

 Score =  628 bits (317), Expect = e-177
 Identities = 486/543 (89%)
 Strand = Plus / Plus

                                                                       
Query: 54  cattcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgatt 113
           ||||| ||||||||||||||||||||||| |||||||| |||||||| || || || |||
Sbjct: 442 cattcagagagagccttctacaaggagcttgttaaagttattgaagcgtctgatgtcatt 501

                                                                       
Query: 114 ctcgaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatg 173
           || |||||||| ||||| || || || ||||||||||||||| |||||||||| ||||||
Sbjct: 502 cttgaggttctcgatgccagagatccactgggcactcgttgcattgacatggaaaagatg 561

                                                                       
Query: 174 gtcaggaaggccgatccgactaaacggattgtgctacttctgaacaagatagatcttgtc 233
           ||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 562 gtcaggaaggctgatcccagtaaacggattgtgctacttctcaacaagatagatcttgtt 621

                                                                       
Query: 234 cccaaggagtcggtggagaagtggctttcatatctaagggaggaattaccaaccgttgca 293
           ||||||||||| || ||||| |||||| | || ||||| |||||| | || || || |||
Sbjct: 622 cccaaggagtcagtagagaaatggcttacgtacctaagagaggaaatgcctactgtcgca 681

                                                                       
Query: 294 ttcaagtgcaacactcaagagcagaggaccaagctgggatggaaatcatcaaagcttgat 353
           || |||||||| || |||||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 682 tttaagtgcaatacccaagagcagaggacaaaactgggatggaaatcatcaaagattgat 741

                                                                       
Query: 354 aaaacaagcaatatcccacaaagcagtgattgtcttggtgctgagaatctgattaaactg 413
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | 
Sbjct: 742 aaatcaagcaatatcccacaaagcagtgattgtcttggtgctgagaacctgatcaaatta 801

                                                                       
Query: 414 ctaaaaaactattccaggagtcatgagctcaagttggcaattactgtgggtattgttggc 473
           || || || |||||||||||||||||||||||  ||||||||||||||||||||||||| 
Sbjct: 802 ctcaagaattattccaggagtcatgagctcaaactggcaattactgtgggtattgttggt 861

                                                                       
Query: 474 cttcctaatgttggcaagagcagtctaatcaacagcttgaagaggtcccgtgtggttaat 533
           |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 862 cttcctaatgttggcaagagcagtctgattaacagtttgaagaggtcccgtgtggttaat 921

                                                                       
Query: 534 gtcggntctactccaggagttactagatcaatgcangaggttcagttagacaagaaggtg 593
           || || || |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 922 gttgggtccactccaggagttactagatcaatgcaagaagttcagttagacaagaaggtg 981

              
Query: 594 aag 596
           |||
Sbjct: 982 aag 984

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>dbj|AK103410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128E17, full
            insert sequence
          Length = 2243

 Score =  628 bits (317), Expect = e-177
 Identities = 486/543 (89%)
 Strand = Plus / Plus

                                                                        
Query: 54   cattcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgatt 113
            ||||| ||||||||||||||||||||||| |||||||| |||||||| || || || |||
Sbjct: 496  cattcagagagagccttctacaaggagcttgttaaagttattgaagcgtctgatgtcatt 555

                                                                        
Query: 114  ctcgaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatg 173
            || |||||||| ||||| || || || ||||||||||||||| |||||||||| ||||||
Sbjct: 556  cttgaggttctcgatgccagagatccactgggcactcgttgcattgacatggaaaagatg 615

                                                                        
Query: 174  gtcaggaaggccgatccgactaaacggattgtgctacttctgaacaagatagatcttgtc 233
            ||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 616  gtcaggaaggctgatcccagtaaacggattgtgctacttctcaacaagatagatcttgtt 675

                                                                        
Query: 234  cccaaggagtcggtggagaagtggctttcatatctaagggaggaattaccaaccgttgca 293
            ||||||||||| || ||||| |||||| | || ||||| |||||| | || || || |||
Sbjct: 676  cccaaggagtcagtagagaaatggcttacgtacctaagagaggaaatgcctactgtcgca 735

                                                                        
Query: 294  ttcaagtgcaacactcaagagcagaggaccaagctgggatggaaatcatcaaagcttgat 353
            || |||||||| || |||||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 736  tttaagtgcaatacccaagagcagaggacaaaactgggatggaaatcatcaaagattgat 795

                                                                        
Query: 354  aaaacaagcaatatcccacaaagcagtgattgtcttggtgctgagaatctgattaaactg 413
            ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | 
Sbjct: 796  aaatcaagcaatatcccacaaagcagtgattgtcttggtgctgagaacctgatcaaatta 855

                                                                        
Query: 414  ctaaaaaactattccaggagtcatgagctcaagttggcaattactgtgggtattgttggc 473
            || || || |||||||||||||||||||||||  ||||||||||||||||||||||||| 
Sbjct: 856  ctcaagaattattccaggagtcatgagctcaaactggcaattactgtgggtattgttggt 915

                                                                        
Query: 474  cttcctaatgttggcaagagcagtctaatcaacagcttgaagaggtcccgtgtggttaat 533
            |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 916  cttcctaatgttggcaagagcagtctgattaacagtttgaagaggtcccgtgtggttaat 975

                                                                        
Query: 534  gtcggntctactccaggagttactagatcaatgcangaggttcagttagacaagaaggtg 593
            || || || |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 976  gttgggtccactccaggagttactagatcaatgcaagaagttcagttagacaagaaggtg 1035

               
Query: 594  aag 596
            |||
Sbjct: 1036 aag 1038

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  230 bits (116), Expect = 4e-57
 Identities = 147/158 (93%)
 Strand = Plus / Minus

                                                                            
Query: 439      agctcaagttggcaattactgtgggtattgttggccttcctaatgttggcaagagcagtc 498
                |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 15445838 agctcaaactggcaattactgtgggtattgttggtcttcctaatgttggcaagagcagtc 15445779

                                                                            
Query: 499      taatcaacagcttgaagaggtcccgtgtggttaatgtcggntctactccaggagttacta 558
                | || ||||| |||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 15445778 tgattaacagtttgaagaggtcccgtgtggttaatgttgggtccactccaggagttacta 15445719

                                                      
Query: 559      gatcaatgcangaggttcagttagacaagaaggtgaag 596
                |||||||||| || ||||||||||||||||||||||||
Sbjct: 15445718 gatcaatgcaagaagttcagttagacaagaaggtgaag 15445681



 Score =  216 bits (109), Expect = 6e-53
 Identities = 190/217 (87%)
 Strand = Plus / Minus

                                                                            
Query: 224      agatcttgtccccaaggagtcggtggagaagtggctttcatatctaagggaggaattacc 283
                ||||||||| ||||||||||| || ||||| |||||| | || ||||| |||||| | ||
Sbjct: 15446524 agatcttgttcccaaggagtcagtagagaaatggcttacgtacctaagagaggaaatgcc 15446465

                                                                            
Query: 284      aaccgttgcattcaagtgcaacactcaagagcagaggaccaagctgggatggaaatcatc 343
                 || || ||||| |||||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 15446464 tactgtcgcatttaagtgcaatacccaagagcagaggacaaaactgggatggaaatcatc 15446405

                                                                            
Query: 344      aaagcttgataaaacaagcaatatcccacaaagcagtgattgtcttggtgctgagaatct 403
                |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 15446404 aaagattgataaatcaagcaatatcccacaaagcagtgattgtcttggtgctgagaacct 15446345

                                                     
Query: 404      gattaaactgctaaaaaactattccaggagtcatgag 440
                ||| ||| | || || || ||||||||||||||||||
Sbjct: 15446344 gatcaaattactcaagaattattccaggagtcatgag 15446308



 Score =  190 bits (96), Expect = 4e-45
 Identities = 153/172 (88%)
 Strand = Plus / Minus

                                                                            
Query: 54       cattcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgatt 113
                ||||| ||||||||||||||||||||||| |||||||| |||||||| || || || |||
Sbjct: 15446782 cattcagagagagccttctacaaggagcttgttaaagttattgaagcgtctgatgtcatt 15446723

                                                                            
Query: 114      ctcgaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatg 173
                || |||||||| ||||| || || || ||||||||||||||| |||||||||| ||||||
Sbjct: 15446722 cttgaggttctcgatgccagagatccactgggcactcgttgcattgacatggaaaagatg 15446663

                                                                    
Query: 174      gtcaggaaggccgatccgactaaacggattgtgctacttctgaacaagatag 225
                ||||||||||| ||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 15446662 gtcaggaaggctgatcccagtaaacggattgtgctacttctcaacaagatag 15446611

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>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1111C09
          Length = 156393

 Score =  230 bits (116), Expect = 4e-57
 Identities = 147/158 (93%)
 Strand = Plus / Minus

                                                                        
Query: 439  agctcaagttggcaattactgtgggtattgttggccttcctaatgttggcaagagcagtc 498
            |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3347 agctcaaactggcaattactgtgggtattgttggtcttcctaatgttggcaagagcagtc 3288

                                                                        
Query: 499  taatcaacagcttgaagaggtcccgtgtggttaatgtcggntctactccaggagttacta 558
            | || ||||| |||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 3287 tgattaacagtttgaagaggtcccgtgtggttaatgttgggtccactccaggagttacta 3228

                                                  
Query: 559  gatcaatgcangaggttcagttagacaagaaggtgaag 596
            |||||||||| || ||||||||||||||||||||||||
Sbjct: 3227 gatcaatgcaagaagttcagttagacaagaaggtgaag 3190



 Score =  216 bits (109), Expect = 6e-53
 Identities = 190/217 (87%)
 Strand = Plus / Minus

                                                                        
Query: 224  agatcttgtccccaaggagtcggtggagaagtggctttcatatctaagggaggaattacc 283
            ||||||||| ||||||||||| || ||||| |||||| | || ||||| |||||| | ||
Sbjct: 4033 agatcttgttcccaaggagtcagtagagaaatggcttacgtacctaagagaggaaatgcc 3974

                                                                        
Query: 284  aaccgttgcattcaagtgcaacactcaagagcagaggaccaagctgggatggaaatcatc 343
             || || ||||| |||||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 3973 tactgtcgcatttaagtgcaatacccaagagcagaggacaaaactgggatggaaatcatc 3914

                                                                        
Query: 344  aaagcttgataaaacaagcaatatcccacaaagcagtgattgtcttggtgctgagaatct 403
            |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3913 aaagattgataaatcaagcaatatcccacaaagcagtgattgtcttggtgctgagaacct 3854

                                                 
Query: 404  gattaaactgctaaaaaactattccaggagtcatgag 440
            ||| ||| | || || || ||||||||||||||||||
Sbjct: 3853 gatcaaattactcaagaattattccaggagtcatgag 3817



 Score =  190 bits (96), Expect = 4e-45
 Identities = 153/172 (88%)
 Strand = Plus / Minus

                                                                        
Query: 54   cattcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgatt 113
            ||||| ||||||||||||||||||||||| |||||||| |||||||| || || || |||
Sbjct: 4291 cattcagagagagccttctacaaggagcttgttaaagttattgaagcgtctgatgtcatt 4232

                                                                        
Query: 114  ctcgaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatg 173
            || |||||||| ||||| || || || ||||||||||||||| |||||||||| ||||||
Sbjct: 4231 cttgaggttctcgatgccagagatccactgggcactcgttgcattgacatggaaaagatg 4172

                                                                
Query: 174  gtcaggaaggccgatccgactaaacggattgtgctacttctgaacaagatag 225
            ||||||||||| ||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 4171 gtcaggaaggctgatcccagtaaacggattgtgctacttctcaacaagatag 4120

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>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1045D11
          Length = 142320

 Score =  230 bits (116), Expect = 4e-57
 Identities = 147/158 (93%)
 Strand = Plus / Minus

                                                                          
Query: 439    agctcaagttggcaattactgtgggtattgttggccttcctaatgttggcaagagcagtc 498
              |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 123379 agctcaaactggcaattactgtgggtattgttggtcttcctaatgttggcaagagcagtc 123320

                                                                          
Query: 499    taatcaacagcttgaagaggtcccgtgtggttaatgtcggntctactccaggagttacta 558
              | || ||||| |||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 123319 tgattaacagtttgaagaggtcccgtgtggttaatgttgggtccactccaggagttacta 123260

                                                    
Query: 559    gatcaatgcangaggttcagttagacaagaaggtgaag 596
              |||||||||| || ||||||||||||||||||||||||
Sbjct: 123259 gatcaatgcaagaagttcagttagacaagaaggtgaag 123222



 Score =  216 bits (109), Expect = 6e-53
 Identities = 190/217 (87%)
 Strand = Plus / Minus

                                                                          
Query: 224    agatcttgtccccaaggagtcggtggagaagtggctttcatatctaagggaggaattacc 283
              ||||||||| ||||||||||| || ||||| |||||| | || ||||| |||||| | ||
Sbjct: 124065 agatcttgttcccaaggagtcagtagagaaatggcttacgtacctaagagaggaaatgcc 124006

                                                                          
Query: 284    aaccgttgcattcaagtgcaacactcaagagcagaggaccaagctgggatggaaatcatc 343
               || || ||||| |||||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 124005 tactgtcgcatttaagtgcaatacccaagagcagaggacaaaactgggatggaaatcatc 123946

                                                                          
Query: 344    aaagcttgataaaacaagcaatatcccacaaagcagtgattgtcttggtgctgagaatct 403
              |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 123945 aaagattgataaatcaagcaatatcccacaaagcagtgattgtcttggtgctgagaacct 123886

                                                   
Query: 404    gattaaactgctaaaaaactattccaggagtcatgag 440
              ||| ||| | || || || ||||||||||||||||||
Sbjct: 123885 gatcaaattactcaagaattattccaggagtcatgag 123849



 Score =  190 bits (96), Expect = 4e-45
 Identities = 153/172 (88%)
 Strand = Plus / Minus

                                                                          
Query: 54     cattcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgatt 113
              ||||| ||||||||||||||||||||||| |||||||| |||||||| || || || |||
Sbjct: 124323 cattcagagagagccttctacaaggagcttgttaaagttattgaagcgtctgatgtcatt 124264

                                                                          
Query: 114    ctcgaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatg 173
              || |||||||| ||||| || || || ||||||||||||||| |||||||||| ||||||
Sbjct: 124263 cttgaggttctcgatgccagagatccactgggcactcgttgcattgacatggaaaagatg 124204

                                                                  
Query: 174    gtcaggaaggccgatccgactaaacggattgtgctacttctgaacaagatag 225
              ||||||||||| ||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 124203 gtcaggaaggctgatcccagtaaacggattgtgctacttctcaacaagatag 124152

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>gb|AY106222.1| Zea mays PCO112886 mRNA sequence
          Length = 1017

 Score =  202 bits (102), Expect = 1e-48
 Identities = 143/158 (90%)
 Strand = Plus / Plus

                                                                       
Query: 448 tggcaattactgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaaca 507
           |||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 14  tggcaattacggtgggtattgttggacttcctaatgttggcaagagcagtctgatcaaca 73

                                                                       
Query: 508 gcttgaagaggtcccgtgtggttaatgtcggntctactccaggagttactagatcaatgc 567
           || ||||||||||||| ||||| |||||||| |||||||||||  |||||||||||||||
Sbjct: 74  gcctgaagaggtcccgagtggtcaatgtcggttctactccagggattactagatcaatgc 133

                                                 
Query: 568 angaggttcagttagacaagaaggtgaagntgntggat 605
           | || ||||| |||||||||||||| ||| || |||||
Sbjct: 134 aagaagttcaattagacaagaaggtaaagttgttggat 171

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>ref|NM_111585.2| Arabidopsis thaliana GTP binding AT3G07050 mRNA, complete cds
          Length = 1816

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                       
Query: 57  tcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgattctc 116
           |||||||| || |||||||||||||| |||||||||||||||   || || || ||| | 
Sbjct: 431 tcggagagggctttctacaaggagctagttaaagtcattgaattgtctgatgtcattttg 490

                                                                      
Query: 117 gaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatggt 175
           ||||||||||||||  | || || || |||||||||||   ||||||||||| ||||||
Sbjct: 491 gaggttcttgatgcccgtgatcctcttggcactcgttgtactgacatggagaggatggt 549

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>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
             complete sequence
          Length = 90142

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                         
Query: 57    tcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgattctc 116
             |||||||| || |||||||||||||| |||||||||||||||   || || || ||| | 
Sbjct: 70580 tcggagagggctttctacaaggagctagttaaagtcattgaattgtctgatgtcattttg 70521

                                                                        
Query: 117   gaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatggt 175
             ||||||||||||||  | || || || |||||||||||   ||||||||||| ||||||
Sbjct: 70520 gaggttcttgatgcccgtgatcctcttggcactcgttgtactgacatggagaggatggt 70462

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>gb|AY054687.1| Arabidopsis thaliana putative GTPase (At3g07050; F17A9.21) mRNA,
           partial cds
          Length = 1663

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                       
Query: 57  tcggagagagccttctacaaggagctggttaaagtcattgaagcttcagacgtgattctc 116
           |||||||| || |||||||||||||| |||||||||||||||   || || || ||| | 
Sbjct: 432 tcggagagggctttctacaaggagctagttaaagtcattgaattgtctgatgtcattttg 491

                                                                      
Query: 117 gaggttcttgatgcaagggacccgctgggcactcgttgcgttgacatggagaagatggt 175
           ||||||||||||||  | || || || |||||||||||   ||||||||||| ||||||
Sbjct: 492 gaggttcttgatgcccgtgatcctcttggcactcgttgtactgacatggagaggatggt 550

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>dbj|AP004504.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02M03, TM0034b,
             complete sequence
          Length = 35858

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 109/136 (80%)
 Strand = Plus / Plus

                                                                         
Query: 451   caattactgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagct 510
             |||| ||||||||| | |||||||| || |||||||| ||||| ||||| || || ||||
Sbjct: 27226 caatcactgtgggtttggttggcctgcccaatgttggtaagagtagtcttattaatagct 27285

                                                                         
Query: 511   tgaagaggtcccgtgtggttaatgtcggntctactccaggagttactagatcaatgcang 570
             | ||||| | || ||| || ||||| ||  ||||||| ||  | || ||||||||||| |
Sbjct: 27286 taaagagatgccatgttgtcaatgttggtgctactcctgggttaacaagatcaatgcaag 27345

                             
Query: 571   aggttcagttagacaa 586
             ||||||| || |||||
Sbjct: 27346 aggttcaattggacaa 27361

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>ref|XM_978505.1| PREDICTED: Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, transcript variant 3 (Gnl3l), mRNA
          Length = 2850

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 878 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 935

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>ref|XM_978471.1| PREDICTED: Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, transcript variant 2 (Gnl3l), mRNA
          Length = 2835

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 863 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 920

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>ref|XM_978436.1| PREDICTED: Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, transcript variant 1 (Gnl3l), mRNA
          Length = 2767

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 795 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 852

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>ref|XM_978588.1| PREDICTED: Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, transcript variant 5 (Gnl3l), mRNA
          Length = 2855

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 883 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 940

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>ref|XM_978541.1| PREDICTED: Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, transcript variant 4 (Gnl3l), mRNA
          Length = 2895

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 923 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 980

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>ref|XM_983225.1| PREDICTED: Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like (Gnl3l), mRNA
          Length = 2079

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 735 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 792

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>gb|BC057033.1| Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, mRNA (cDNA clone MGC:67208
           IMAGE:6834283), complete cds
          Length = 4842

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 842 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 899

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>gb|BC020354.1| Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, mRNA (cDNA clone IMAGE:3157942)
          Length = 1876

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 852 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 909

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>ref|NM_198110.1| Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like (Gnl3l), mRNA
          Length = 4842

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 842 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 899

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>gb|BC079653.1| Mus musculus guanine nucleotide binding protein-like 3
           (nucleolar)-like, mRNA (cDNA clone MGC:90757
           IMAGE:6843880), complete cds
          Length = 4822

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 458 tgtgggtattgttggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
           ||||||| |||| |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 838 tgtgggtgttgtaggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 895

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>ref|XM_538054.2| PREDICTED: Canis familiaris similar to guanine nucleotide binding
            protein-like 3 (nucleolar)-like (LOC480933), mRNA
          Length = 2206

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 458  tgtgggtattgttggccttcctaatgttggcaagagcag 496
            ||||||| |||| || |||||||||||||| ||||||||
Sbjct: 963  tgtgggtgttgtgggtcttcctaatgttgggaagagcag 1001



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 214 tgaacaagatagatcttgtccccaaggagtcggtggagaagtggct 259
           |||||||||| ||||| |||||||| |||   ||||||||||||||
Sbjct: 716 tgaacaagattgatctggtccccaaagagattgtggagaagtggct 761

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>ref|XM_808402.1| Trypanosoma cruzi strain CL Brener GTP-binding protein
           (Tc00.1047053511625.50) partial mRNA
          Length = 1185

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 465 attgttggccttcctaatgttggcaag 491
           |||||||| ||||||||||||||||||
Sbjct: 85  attgttgggcttcctaatgttggcaag 111

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>gb|AC027134.4|AC027134 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete
             sequence
          Length = 102183

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 280   taccaaccgttgcattcaagtg 301
             ||||||||||||||||||||||
Sbjct: 70867 taccaaccgttgcattcaagtg 70846

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>gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, complete sequence
          Length = 217553

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 424    attccaggagtcatgagctca 444
              |||||||||||||||||||||
Sbjct: 216756 attccaggagtcatgagctca 216736

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>gb|AC127381.4| Homo sapiens BAC clone RP11-1360M22 from UL, complete sequence
          Length = 241627

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 424  attccaggagtcatgagctca 444
            |||||||||||||||||||||
Sbjct: 9059 attccaggagtcatgagctca 9079

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>gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, complete sequence
          Length = 155343

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   attccaggagtcatgagctca 444
             |||||||||||||||||||||
Sbjct: 60098 attccaggagtcatgagctca 60078

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>gb|AC140120.2| Homo sapiens 3 BAC RP11-106F4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 74350

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 402  ctgattaaactgctaaaaaac 422
            |||||||||||||||||||||
Sbjct: 9831 ctgattaaactgctaaaaaac 9851

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>gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, complete sequence
          Length = 187670

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 424  attccaggagtcatgagctca 444
            |||||||||||||||||||||
Sbjct: 5353 attccaggagtcatgagctca 5373

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>gb|AC126335.16| Homo sapiens chromosome 15, clone RP11-854K16, complete sequence
          Length = 178738

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   attccaggagtcatgagctca 444
             |||||||||||||||||||||
Sbjct: 48637 attccaggagtcatgagctca 48617

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 239      ggagtcggtggagaagtggct 259
                |||||||||||||||||||||
Sbjct: 24289538 ggagtcggtggagaagtggct 24289518

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>gb|AC127533.9| Homo sapiens chromosome 15, clone RP11-1363O20, complete sequence
          Length = 165791

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   attccaggagtcatgagctca 444
             |||||||||||||||||||||
Sbjct: 19794 attccaggagtcatgagctca 19814

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>gb|AC134676.5| Homo sapiens chromosome 15, clone CTD-2290E14, complete sequence
          Length = 93881

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   attccaggagtcatgagctca 444
             |||||||||||||||||||||
Sbjct: 73409 attccaggagtcatgagctca 73429

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>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2055_H10
          Length = 119290

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   ggagtcggtggagaagtggct 259
             |||||||||||||||||||||
Sbjct: 89926 ggagtcggtggagaagtggct 89906

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>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0407A09
          Length = 103788

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   ggagtcggtggagaagtggct 259
             |||||||||||||||||||||
Sbjct: 19076 ggagtcggtggagaagtggct 19056

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>dbj|AP002002.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-692F4, complete
              sequence
          Length = 112270

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 399    aatctgattaaactgctaaaa 419
              |||||||||||||||||||||
Sbjct: 106663 aatctgattaaactgctaaaa 106683

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>emb|AL805937.11| Mouse DNA sequence from clone RP23-139B4 on chromosome X, complete
             sequence
          Length = 178671

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 471   ggccttcctaatgttggcaagagcagtctaatcaacagcttgaag 515
             |||||||| ||||| || ||||||||||| ||||| ||| |||||
Sbjct: 73653 ggccttcccaatgtggggaagagcagtctgatcaatagcctgaag 73609

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>gb|AY710429.1| Cryptococcus gattii strain E566 MATa locus, complete sequence
          Length = 144400

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   gctttcatatctaagggagg 276
             ||||||||||||||||||||
Sbjct: 50352 gctttcatatctaagggagg 50333

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>gb|BT012773.1| Lycopersicon esculentum clone 113752F, mRNA sequence
          Length = 1846

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 468 gttggccttcctaatgttggcaag 491
           ||||||||||||||||| ||||||
Sbjct: 367 gttggccttcctaatgtcggcaag 390

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>ref|XM_652421.1| Entamoeba histolytica HM-1:IMSS GTP-binding protein (1.t00128)
           partial mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 460 tgggtattgttggccttcctaatgttgg 487
           ||||||||||||| ||||| ||||||||
Sbjct: 65  tgggtattgttggacttccaaatgttgg 92

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>emb|AL355316.12| Human DNA sequence from clone RP11-82L9 on chromosome 10 Contains the
             3' end of the DOCK1 gene for dedicator of cyto-kinesis 1,
             complete sequence
          Length = 142638

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 403   tgattaaactgctaaaaaactatt 426
             ||||||||||||||||||| ||||
Sbjct: 54567 tgattaaactgctaaaaaattatt 54544

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>emb|AL034343.17|HS108C2 Human DNA sequence from clone RP1-108C2 on chromosome 6p12.1-21.1
              Contains the MCM3 gene for MCM3 minichromosome maintenance
              deficient 3 (S. cerevisiae), a CACT
              (carnitine/acylcarnitine translocase) pseudogene, the IL17F
              gene for interleukin 17F (ML1 ML-1) and a CpG island,
              complete sequence
          Length = 130904

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    caagagcagtctaatcaaca 507
              ||||||||||||||||||||
Sbjct: 112676 caagagcagtctaatcaaca 112695

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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 406     ttaaactgctaaaaaactat 425
               ||||||||||||||||||||
Sbjct: 2150944 ttaaactgctaaaaaactat 2150925

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>gb|AC068112.5| Homo sapiens chromosome 18, clone RP11-526H11, complete sequence
          Length = 165840

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   ggaaatcatcaaagcttgat 353
             ||||||||||||||||||||
Sbjct: 77901 ggaaatcatcaaagcttgat 77920

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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     tcatcaaagcttgataaaac 358
               ||||||||||||||||||||
Sbjct: 2608838 tcatcaaagcttgataaaac 2608857

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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 235     ccaaggagtcggtggagaag 254
               ||||||||||||||||||||
Sbjct: 1467795 ccaaggagtcggtggagaag 1467814

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>emb|BX324202.9| Zebrafish DNA sequence from clone CH211-158G9 in linkage group 6,
             complete sequence
          Length = 169117

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 467   tgttggccttcctaatgttggcaa 490
             ||||||||||| ||||||||||||
Sbjct: 94114 tgttggccttcgtaatgttggcaa 94137

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>dbj|AP006114.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT43M15, TM0198a,
             complete sequence
          Length = 75051

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   cttgataaaacaagcaatat 367
             ||||||||||||||||||||
Sbjct: 68530 cttgataaaacaagcaatat 68511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,795,703
Number of Sequences: 3902068
Number of extensions: 4795703
Number of successful extensions: 87212
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87059
Number of HSP's gapped (non-prelim): 151
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result