ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 ... 38 4.7
2gb|AF213822.1|AF213822 Zymomonas mobilis strain ZM4 fosmid clone... 38 4.7
3gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 38 4.7

>emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 in linkage group 25,
              complete sequence
          Length = 225139

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     atcttctcaccagcttcac 34
              |||||||||||||||||||
Sbjct: 142250 atcttctcaccagcttcac 142232



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>gb|AF213822.1|AF213822 Zymomonas mobilis strain ZM4 fosmid clone 42B3, complete sequence
          Length = 35698

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 69   ctcatcgaccgcatcacaggcat 91
            |||||||||||||||| ||||||
Sbjct: 9457 ctcatcgaccgcatcataggcat 9479



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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 69     ctcatcgaccgcatcacaggcat 91
              |||||||||||||||| ||||||
Sbjct: 816410 ctcatcgaccgcatcataggcat 816388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 570,391
Number of Sequences: 3902068
Number of extensions: 570391
Number of successful extensions: 35683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35676
Number of HSP's gapped (non-prelim): 7
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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