ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4i20 |
|---|---|
| Clone Library Name | barley_pub |
>Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114| Length = 122 Score = 35.8 bits (81), Expect = 0.063 Identities = 19/41 (46%), Positives = 20/41 (48%) Frame = -3 Query: 487 SRHRGAKPSRRCGXXXXXXXXXXXXXXSVERRPFHSAPSDH 365 SRHRGAKP RR SV+RR FH P DH Sbjct: 82 SRHRGAKPPRRYELLVAISLLSPEYLLSVKRRRFHFPPPDH 122
>EFHD2_MOUSE (Q9D8Y0) EF-hand domain-containing protein 2 (Swiprosin-1)| Length = 240 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 277 PDGHWSSSAKAEGSLTARLTRRAETKVGLSDPTVPSGR 390 PD + A+ L+A+L RRA+ G+ +P PS R Sbjct: 41 PDETAQALGSADDELSAKLLRRADLNQGIGEPQSPSRR 78
>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle| attachment abnormal protein 3) Length = 3767 Score = 29.3 bits (64), Expect = 5.9 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Frame = -1 Query: 471 PNLPVDVDSWGRSACYP*SNFYPLSDGPSTRHRRITKADFR-LCSTGE-SCSQAPFCLCT 298 PN P+ D R C P N Y G + + IT + C TGE C ++ C+ T Sbjct: 1569 PNDPMSCDVRKRQQCLPRGNIYTCQCGRNEKRHPITDICLKNECLTGEHDCDRSARCIDT 1628
>SNUT3_XENTR (Q6DDA4) U4/U6.U5 tri-snRNP-associated protein 3| Length = 156 Score = 29.3 bits (64), Expect = 5.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 393 RRSTDKSYSRDNRLIFPKSPHRREGLAPR 479 RR ++S SR+ R +SPHRR +PR Sbjct: 27 RRRRERSRSRERRRSRSRSPHRRRSRSPR 55
>SNUT3_XENLA (Q6GLZ8) U4/U6.U5 tri-snRNP-associated protein 3| Length = 158 Score = 29.3 bits (64), Expect = 5.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 393 RRSTDKSYSRDNRLIFPKSPHRREGLAPR 479 RR ++S SR+ R +SPHRR +PR Sbjct: 27 RRRRERSRSRERRRSRSRSPHRRRSRSPR 55
>EFTS_STAAW (Q8NWZ6) Elongation factor Ts (EF-Ts)| Length = 293 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 331 LTRRAETKVGLSDPTVPSGRAVAQRIKVTLGITG 432 L +AET L + T+P+G++V +RIK + G Sbjct: 101 LDTKAETVEALMETTLPNGKSVDERIKEAISTIG 134
>EFTS_STAAS (Q6G9V6) Elongation factor Ts (EF-Ts)| Length = 293 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 331 LTRRAETKVGLSDPTVPSGRAVAQRIKVTLGITG 432 L +AET L + T+P+G++V +RIK + G Sbjct: 101 LDTKAETVEALMETTLPNGKSVDERIKEAISTIG 134
>EFTS_STAAR (Q6GHH8) Elongation factor Ts (EF-Ts)| Length = 293 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 331 LTRRAETKVGLSDPTVPSGRAVAQRIKVTLGITG 432 L +AET L + T+P+G++V +RIK + G Sbjct: 101 LDTKAETVEALMETTLPNGKSVDERIKEAISTIG 134
>EFTS_STAAN (P99171) Elongation factor Ts (EF-Ts)| Length = 293 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 331 LTRRAETKVGLSDPTVPSGRAVAQRIKVTLGITG 432 L +AET L + T+P+G++V +RIK + G Sbjct: 101 LDTKAETVEALMETTLPNGKSVDERIKEAISTIG 134
>EFTS_STAAM (P64054) Elongation factor Ts (EF-Ts)| Length = 293 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 331 LTRRAETKVGLSDPTVPSGRAVAQRIKVTLGITG 432 L +AET L + T+P+G++V +RIK + G Sbjct: 101 LDTKAETVEALMETTLPNGKSVDERIKEAISTIG 134
>EFTS_STAAC (Q5HGH4) Elongation factor Ts (EF-Ts)| Length = 293 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 331 LTRRAETKVGLSDPTVPSGRAVAQRIKVTLGITG 432 L +AET L + T+P+G++V +RIK + G Sbjct: 101 LDTKAETVEALMETTLPNGKSVDERIKEAISTIG 134
>EFHD2_HUMAN (Q96C19) EF-hand domain-containing protein 2 (Swiprosin-1)| Length = 240 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 277 PDGHWSSSAKAEGSLTARLTRRAETKVGLSDPTVPSGR 390 PD + A+ L+A+L RRA+ G+ +P PS R Sbjct: 41 PDEAAEALGSADCELSAKLLRRADLNQGIGEPQSPSRR 78
>SNUT3_MOUSE (Q8K194) U4/U6.U5 tri-snRNP-associated protein 3| Length = 155 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 393 RRSTDKSYSRDNRLIFPKSPHRREGLAPR 479 RR +S RD R +SPHRR +PR Sbjct: 27 RRERSRSRERDRRRSRSRSPHRRRSRSPR 55
>SNUT3_HUMAN (Q8WVK2) U4/U6.U5 tri-snRNP-associated protein 3 (U4/U6.U5| tri-snRNP-associated 27 kDa protein) (27K) (Nucleic acid-binding protein RY-1) Length = 155 Score = 28.9 bits (63), Expect = 7.7 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 393 RRSTDKSYSRDNRLIFPKSPHRREGLAPR 479 RR +S RD R +SPHRR +PR Sbjct: 27 RRERSRSRERDRRRSRSRSPHRRRSRSPR 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,285,335 Number of Sequences: 219361 Number of extensions: 1449096 Number of successful extensions: 3615 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3614 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
