ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4i15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC152983.2| Mus musculus 10 BAC RP23-17L11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224120 Score = 40.1 bits (20), Expect = 0.47 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cagcaagtgattatgagtat 28 |||||||||||||||||||| Sbjct: 146675 cagcaagtgattatgagtat 146694
>ref|NM_009495.1| Mus musculus vomeronasal 2, receptor, 9 (V2r9), mRNA Length = 2734 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 289 tgcagcaagtgaatatgagtttcttct 315
>ref|NM_009485.1| Mus musculus vomeronasal 2, receptor, 1 (V2r1), mRNA Length = 3045 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 266 tgcagcaagtgaatatgagtttcttct 292
>gb|AC004505.1| Homo sapiens chromosome 20, P1 clone 86C1 (LBNL H65), complete sequence Length = 57493 Score = 38.2 bits (19), Expect = 1.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 agcaagtgattatgagtat 28 ||||||||||||||||||| Sbjct: 12052 agcaagtgattatgagtat 12034
>ref|XR_002406.1| PREDICTED: Mus musculus similar to vomeronasal 2, receptor, 1 (LOC669149), mRNA Length = 1977 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 210 tgcagcaagtgaatatgagtttcttct 236
>ref|XM_001006849.1| PREDICTED: Mus musculus vomeronasal 2, receptor, 3 (V2r3), mRNA Length = 2358 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 18 tgcagcaagtgaatatgagtttcttct 44
>ref|XM_920036.2| PREDICTED: Mus musculus similar to vomeronasal 2, receptor, 1, transcript variant 3 (LOC632660), mRNA Length = 2846 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 210 tgcagcaagtgaatatgagtttcttct 236
>ref|XM_906736.1| PREDICTED: Mus musculus similar to vomeronasal 2, receptor, 1, transcript variant 1 (LOC632660), mRNA Length = 2547 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 210 tgcagcaagtgaatatgagtttcttct 236
>ref|XM_356375.5| PREDICTED: Mus musculus vomeronasal 2, receptor, 13, transcript variant 1 (V2r13), mRNA Length = 2846 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 210 tgcagcaagtgaatatgagtttcttct 236
>ref|XM_893049.1| PREDICTED: Mus musculus vomeronasal 2, receptor, 13, transcript variant 2 (V2r13), mRNA Length = 2547 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 210 tgcagcaagtgaatatgagtttcttct 236
>gb|AC122858.2| Mus musculus BAC clone RP23-126F14 from 14, complete sequence Length = 189217 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 96732 tgcagcaagtgaatatgagtttcttct 96758
>emb|BX276189.1| Human DNA sequence from clone RP4-678D15 on chromosome 20q13.13-13.2 Contains part of the gene for a novel protein (FLJ33887), complete sequence Length = 54161 Score = 38.2 bits (19), Expect = 1.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 agcaagtgattatgagtat 28 ||||||||||||||||||| Sbjct: 6770 agcaagtgattatgagtat 6752
>gb|AC158371.2| Pan troglodytes BAC clone CH251-423C22 from chromosome unknown, complete sequence Length = 154709 Score = 38.2 bits (19), Expect = 1.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 agcaagtgattatgagtat 28 ||||||||||||||||||| Sbjct: 132517 agcaagtgattatgagtat 132535
>gb|AF011423.1|AF011423 Mus musculus putative pheromone receptor (VR13) mRNA, partial cds Length = 2773 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 137 tgcagcaagtgaatatgagtttcttct 163
>gb|AF011419.1|AF011419 Mus musculus putative pheromone receptor (VR9) mRNA, complete cds Length = 2734 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 289 tgcagcaagtgaatatgagtttcttct 315
>gb|AF011413.1|AF011413 Mus musculus putative pheromone receptor (VR3) mRNA, partial cds Length = 2907 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 72 tgcagcaagtgaatatgagtttcttct 98
>gb|AF011411.1|AF011411 Mus musculus putative pheromone receptor (VR1) mRNA, complete cds Length = 3080 Score = 38.2 bits (19), Expect = 1.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatgagtatcttct 33 |||||||||||| ||||||| |||||| Sbjct: 266 tgcagcaagtgaatatgagtttcttct 292
>gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 169902 Score = 38.2 bits (19), Expect = 1.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 agcaagtgattatgagtat 28 ||||||||||||||||||| Sbjct: 64431 agcaagtgattatgagtat 64449
>ref|NM_119392.3| Arabidopsis thaliana binding / transporter AT4G32400 mRNA, complete cds Length = 1467 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 atgagtatcttcttgcaa 38 |||||||||||||||||| Sbjct: 1218 atgagtatcttcttgcaa 1201
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatga 24 |||||||||||||||||| Sbjct: 7416118 tgcagcaagtgattatga 7416135
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatga 24 |||||||||||||||||| Sbjct: 54673 tgcagcaagtgattatga 54690
>ref|XM_537305.2| PREDICTED: Canis familiaris similar to Rho-associated protein kinase 1 (Rho-associated, coiled-coil containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (LOC480181), mRNA Length = 6101 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 133 gaagctgcagcaagtgat 150
>gb|AC114549.9| Mus musculus chromosome 19, clone RP24-216P17, complete sequence Length = 200425 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 agtatcttcttgcaatgt 41 |||||||||||||||||| Sbjct: 159340 agtatcttcttgcaatgt 159323
>emb|AL513323.14| Human DNA sequence from clone RP11-550P17 on chromosome 1 Contains a pentraxin pseudogene, the OR10J2P olfactory receptor, family 10, subfamily J, member 2 pseudogene, the FCER1A gene for Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide, the OR10J3 gene for olfactory receptor, family 10, subfamily J, member 3, the OR10J7P olfactory receptor, family 10, subfamily J, member 7 pseudogene, the OR10J8P olfactory receptor, family 10, subfamily J, member 8 pseudogene, the OR10J9P olfactory receptor, family 10, subfamily J, member 9 pseudogene and the 3' end of a novel gene, complete sequence Length = 168339 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 157707 gaagctgcagcaagtgat 157724
>emb|AL359253.17| Human DNA sequence from clone RP11-428L19 on chromosome 9 Contains the 5' end of the PCSK5 gene for proprotein convertase subtilisin/kexin type 5 and two CpG islands, complete sequence Length = 189608 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 60917 gaagctgcagcaagtgat 60900
>emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chromosome 9 Contains a novel gene, the 5' end of the CHAC gene for chorea acanthocytosis and a CpG island, complete sequence Length = 110633 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 101795 gaagctgcagcaagtgat 101812
>gb|AC015756.18| Homo sapiens chromosome , clone RP11-1L12, complete sequence Length = 180105 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 30984 gaagctgcagcaagtgat 31001
>emb|AL049868.20|HSJ927M24 Human DNA sequence from clone RP5-927M24 on chromosome 20 Contains a novel gene (LOC128439), the 5' end of the gene for a novel protein (KIAA1219), the RPS3P2 gene for ribosomal protein S3 pseudogene 2 and a CpG island, complete sequence Length = 121922 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 57372 gaagctgcagcaagtgat 57389
>emb|AL109939.13|HSJ351K20 Human DNA sequence from clone RP3-351K20 on chromosome 6q22.1-22.33 Contains the DKFZP434O1427 gene for dactilydin (FLJ14870, FLJ14530), the gene for a novel enoyl-CoA hydratase/isomerase family protein similar to uncharacterised hypothalamus protein HCDASE, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation) (YWHAZ)(14-3-3 zeta) pseudogene, a 60S ribosomal protein L5 (RPL5) pseudogene and a CpG island, complete sequence Length = 115583 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 39902 gaagctgcagcaagtgat 39919
>emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 77 Length = 197252 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 atgagtatcttcttgcaa 38 |||||||||||||||||| Sbjct: 54225 atgagtatcttcttgcaa 54208
>emb|AL034567.1|ATF8B4 Arabidopsis thaliana DNA chromosome 4, BAC clone F8B4 (ESSA project) Length = 93257 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 atgagtatcttcttgcaa 38 |||||||||||||||||| Sbjct: 40508 atgagtatcttcttgcaa 40491
>gb|AC104819.4| Homo sapiens BAC clone RP11-731D1 from 4, complete sequence Length = 129203 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 105179 gaagctgcagcaagtgat 105196
>gb|AC104183.2| Homo sapiens chromosome 3 clone RP11-180N14, complete sequence Length = 169709 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 90914 gaagctgcagcaagtgat 90931
>gb|DQ404153.1| Bos taurus BTA29 11629 genomic sequence contig containing highly polymorphic single nucleotide sites Length = 18838 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 tgaagctgcagcaagtga 18 |||||||||||||||||| Sbjct: 14139 tgaagctgcagcaagtga 14156
>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence Length = 144324 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 attatgagtatcttcttg 35 |||||||||||||||||| Sbjct: 136930 attatgagtatcttcttg 136913
>gb|AC096571.1| Homo sapiens BAC clone RP11-395B18 from 4, complete sequence Length = 93638 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 91135 gaagctgcagcaagtgat 91118
>gb|AC083843.5| Homo sapiens chromosome 8, clone RP11-157B5, complete sequence Length = 159032 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 84938 gaagctgcagcaagtgat 84921
>gb|AC016450.10| Homo sapiens chromosome 11, clone RP11-361K15, complete sequence Length = 187449 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 15356 gaagctgcagcaagtgat 15339
>gb|AY074831.1| Arabidopsis thaliana AT4g32400/F8B4_100 mRNA, complete cds Length = 1179 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 atgagtatcttcttgcaa 38 |||||||||||||||||| Sbjct: 1157 atgagtatcttcttgcaa 1140
>gb|AC079238.7| Homo sapiens BAC clone RP11-719L21 from 4, complete sequence Length = 142462 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 77830 gaagctgcagcaagtgat 77813
>gb|AC068107.6| Homo sapiens chromosome 11, clone RP11-807F21, complete sequence Length = 177969 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 143675 gaagctgcagcaagtgat 143692
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gagtatcttcttgcaatg 40 |||||||||||||||||| Sbjct: 4924020 gagtatcttcttgcaatg 4924037
>gb|AF372944.1|AF372944 Arabidopsis thaliana AT4g32400/F8B4_100 mRNA, complete cds Length = 1439 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 atgagtatcttcttgcaa 38 |||||||||||||||||| Sbjct: 1200 atgagtatcttcttgcaa 1183
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 tgcagcaagtgattatga 24 |||||||||||||||||| Sbjct: 7413953 tgcagcaagtgattatga 7413970
>gb|AC107208.6| Homo sapiens BAC clone RP13-487K5 from 4, complete sequence Length = 81763 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 attatgagtatcttcttg 35 |||||||||||||||||| Sbjct: 70869 attatgagtatcttcttg 70852
>gb|AC104088.6| Homo sapiens BAC clone RP11-744C22 from 2, complete sequence Length = 158746 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 143504 gaagctgcagcaagtgat 143521
>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence Length = 173993 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 46479 gaagctgcagcaagtgat 46496
>gb|AC018465.8| Homo sapiens BAC clone RP11-350D5 from 2, complete sequence Length = 167073 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 17472 gaagctgcagcaagtgat 17489
>gb|AC011603.37| Homo sapiens 12 BAC RP11-386G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174400 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 7833 gaagctgcagcaagtgat 7816
>gb|AY084938.1| Arabidopsis thaliana clone 12232 mRNA, complete sequence Length = 1334 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 atgagtatcttcttgcaa 38 |||||||||||||||||| Sbjct: 1215 atgagtatcttcttgcaa 1198
>gb|AC012089.13|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150429 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 126728 gaagctgcagcaagtgat 126711
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 gtatcttcttgcaatgtc 42 |||||||||||||||||| Sbjct: 1338780 gtatcttcttgcaatgtc 1338763
>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence Length = 167628 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 caagtgattatgagtatc 29 |||||||||||||||||| Sbjct: 62766 caagtgattatgagtatc 62783
>emb|AL445886.3|CNS07EET Human chromosome 14 DNA sequence BAC R-369B6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167398 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 agcaagtgattatgagta 27 |||||||||||||||||| Sbjct: 115250 agcaagtgattatgagta 115233
>gb|AC101745.9| Mus musculus chromosome 19, clone RP23-473I8, complete sequence Length = 174866 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 agtatcttcttgcaatgt 41 |||||||||||||||||| Sbjct: 48488 agtatcttcttgcaatgt 48471
>emb|AL163953.3|CNS05TBQ Human chromosome 14 DNA sequence BAC R-533L7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162986 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 agcaagtgattatgagta 27 |||||||||||||||||| Sbjct: 159056 agcaagtgattatgagta 159039
>dbj|AP002535.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 4/4 Length = 239684 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 178988 gaagctgcagcaagtgat 178971
>dbj|AB045365.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:622b6, complete sequence Length = 126549 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 gaagctgcagcaagtgat 19 |||||||||||||||||| Sbjct: 65853 gaagctgcagcaagtgat 65836 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 353,559 Number of Sequences: 3902068 Number of extensions: 353559 Number of successful extensions: 91358 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91162 Number of HSP's gapped (non-prelim): 196 length of query: 53 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 33 effective length of database: 17,155,003,908 effective search space: 566115128964 effective search space used: 566115128964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
