Clone Information

BLAST Search Result

Clone Name	bags4i11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	258	2e-65
2	dbj\|AP003524.3\| Oryza sativa (japonica cultivar-group) genomic D...	258	2e-65
3	dbj\|AK121630.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
4	dbj\|AK098865.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
5	dbj\|AK072192.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
6	ref\|XM_467550.1\| Oryza sativa (japonica cultivar-group), mRNA	129	1e-26
7	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	129	1e-26
8	dbj\|AP005113.3\| Oryza sativa (japonica cultivar-group) genomic D...	129	1e-26
9	dbj\|AK071630.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	129	1e-26
10	dbj\|AB001888.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	129	1e-26
11	dbj\|AP005413.2\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
12	emb\|BX571857.1\| Staphylococcus aureus strain MSSA476, complete g...	46	0.11
13	dbj\|BA000017.4\| Staphylococcus aureus subsp. aureus Mu50 DNA, co...	46	0.11
14	gb\|CP000046.1\| Staphylococcus aureus subsp. aureus COL, complete...	46	0.11
15	gb\|CP000253.1\| Staphylococcus aureus subsp. aureus NCTC 8325, co...	46	0.11
16	gb\|CP000255.1\| Staphylococcus aureus subsp. aureus USA300, compl...	46	0.11
17	gb\|AC027138.10\| Staphylococcus aureus clone sabac-9, complete se...	46	0.11
18	dbj\|BA000033.2\| Staphylococcus aureus subsp. aureus MW2 DNA, com...	46	0.11
19	dbj\|BA000018.3\| Staphylococcus aureus subsp. aureus N315 genomic...	46	0.11
20	emb\|BX571856.1\| Staphylococcus aureus subsp. aureus strain MRSA2...	46	0.11
21	emb\|AJ938182.1\| Staphylococcus aureus RF122 complete genome	46	0.11
22	emb\|CR394542.5\| Zebrafish DNA sequence from clone DKEY-91I10 in ...	44	0.44
23	ref\|XM_714965.1\| Candida albicans SC5314 hypothetical protein (C...	42	1.7
24	ref\|XM_714835.1\| Candida albicans SC5314 hypothetical protein (C...	42	1.7
25	emb\|AL359987.13\| Human DNA sequence from clone RP11-596A13 on ch...	42	1.7
26	emb\|AL021937.1\|HS149A16 Human DNA sequence from clone RP1-149A16...	42	1.7
27	gb\|AC145339.34\| Pan troglodytes clone rp43-58e4, complete sequence	42	1.7
28	ref\|XM_415969.1\| PREDICTED: Gallus gallus similar to hypothetica...	40	6.9
29	emb\|CR753837.14\| Zebrafish DNA sequence from clone DKEY-234K7 in...	40	6.9
30	ref\|XM_445245.1\| Candida glabrata CBS138, CAGL0C01617g partial mRNA	40	6.9
31	gb\|AC007558.3\| Homo sapiens BAC clone RP11-148A10 from 7, comple...	40	6.9
32	emb\|CR380949.1\| Candida glabrata strain CBS138 chromosome C comp...	40	6.9
33	gb\|AC161590.2\| Mus musculus BAC clone RP24-300B21 from chromosom...	40	6.9
34	emb\|BX950873.9\| Zebrafish DNA sequence from clone CH211-119G22 i...	40	6.9
35	emb\|BX548018.9\| Zebrafish DNA sequence from clone DKEY-23O18 in ...	40	6.9
36	gb\|AC079955.9\| Homo sapiens chromosome 10 clone RP11-134O16, com...	40	6.9
37	gb\|AC156393.12\| Mus musculus 10 BAC RP24-315E6 (Roswell Park Can...	40	6.9
38	gb\|AC158639.8\| Mus musculus 10 BAC RP24-73H17 (Roswell Park Canc...	40	6.9
39	emb\|BX927224.10\| Zebrafish DNA sequence from clone CH211-278C2 i...	40	6.9
40	emb\|BX000361.8\| Zebrafish DNA sequence from clone DKEY-181F18 in...	40	6.9
41	emb\|BX322606.6\| Zebrafish DNA sequence from clone DKEY-40F12, co...	40	6.9
42	dbj\|AB084353.1\| Chloromonas rosae chloroplast psaB gene for P700...	40	6.9
43	dbj\|AB084349.1\| Chloromonas palmelloides chloroplast psaB gene f...	40	6.9
44	dbj\|AB084347.1\| Chloromonas reticulata psaB gene for P700 chloro...	40	6.9
45	dbj\|AB084343.1\| Chlamydomonas macrostellata chloroplast psaB gen...	40	6.9

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  258 bits (130), Expect = 2e-65
 Identities = 258/300 (86%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1        cctgccatggtaccgctgcctagnagngaacacctcactttgccaaaattgtgactggaa 60
                ||||||||||| ||||||||| | ||  ||  |||| ||||||||||||||||| |||||
Sbjct: 10917048 cctgccatggt-ccgctgccttgtagaaaatgcctcgctttgccaaaattgtgattggaa 10916990

                                                                            
Query: 61       tgggcatagtgctggatcctccgctgctggacacaaaagacagaatataaactgctattc 120
                ||||||||||||||| || || |||||||| || || || ||||  ||||||||||| ||
Sbjct: 10916989 tgggcatagtgctgggtcttcagctgctggtcataagaggcagaccataaactgctactc 10916930

                                                                            
Query: 121      ggggtgcccatcatctgcagagctttcaagaatgtggtcattcattttggatattcctaa 180
                 ||||||||||||||| |||| ||||||| ||| ||| ||||  ||| ||||||||||||
Sbjct: 10916929 agggtgcccatcatcttcagaactttcaaaaatctggacatttgtttcggatattcctaa 10916870

                                                                            
Query: 181      tgtagctcctgagctgaattgtgagcaagtaataagcatgatgagcatcagtgacagtgc 240
                |||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||||| 
Sbjct: 10916869 tgtagctcctgagccgaattgcgagcaagggataagcatgatgagcatcagcgacagtgg 10916810

                                                                            
Query: 241      tgtcagtaatggagacaatgctcaaggggacaacagtttggtagatatggcttgtgcaac 300
                ||||||||||  ||||||||||  |||||||| ||||||| ||||||| ||| |||||||
Sbjct: 10916809 tgtcagtaatcaagacaatgctgcaggggacagcagtttgttagatattgctagtgcaac 10916750



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                            
Query: 316      caagcaaaagtctgtgatcggctcatcttccgaagctggtctgaaccttcttccacctac 375
                ||||| ||||||| |||| ||||| || || ||||||||  ||||||||||||||| | |
Sbjct: 10916722 caagccaaagtctttgataggctcctcatctgaagctggcgtgaaccttcttccacttgc 10916663

                                                 
Query: 376      taatgatcagacagctgtatctgtggattcgac 408
                || ||||||||  |||| ||| |||||||||||
Sbjct: 10916662 tactgatcagatggctggatccgtggattcgac 10916630



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                            
Query: 435      atatgttcagcaaggatagcatatatgaagatttctctatggatgatattgatctgagtt 494
                ||||||||||||| || || |||||||||||||||| | |||| ||| ||||||| ||||
Sbjct: 10915369 atatgttcagcaaagacagtatatatgaagatttctgtgtggacgatgttgatcttagtt 10915310

                             
Query: 495      acgaaaactatga 507
                 |||||| |||||
Sbjct: 10915309 tcgaaaattatga 10915297

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>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0501G08
          Length = 173505

 Score =  258 bits (130), Expect = 2e-65
 Identities = 258/300 (86%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctgccatggtaccgctgcctagnagngaacacctcactttgccaaaattgtgactggaa 60
            ||||||||||| ||||||||| | ||  ||  |||| ||||||||||||||||| |||||
Sbjct: 1130 cctgccatggt-ccgctgccttgtagaaaatgcctcgctttgccaaaattgtgattggaa 1072

                                                                        
Query: 61   tgggcatagtgctggatcctccgctgctggacacaaaagacagaatataaactgctattc 120
            ||||||||||||||| || || |||||||| || || || ||||  ||||||||||| ||
Sbjct: 1071 tgggcatagtgctgggtcttcagctgctggtcataagaggcagaccataaactgctactc 1012

                                                                        
Query: 121  ggggtgcccatcatctgcagagctttcaagaatgtggtcattcattttggatattcctaa 180
             ||||||||||||||| |||| ||||||| ||| ||| ||||  ||| ||||||||||||
Sbjct: 1011 agggtgcccatcatcttcagaactttcaaaaatctggacatttgtttcggatattcctaa 952

                                                                        
Query: 181  tgtagctcctgagctgaattgtgagcaagtaataagcatgatgagcatcagtgacagtgc 240
            |||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||||| 
Sbjct: 951  tgtagctcctgagccgaattgcgagcaagggataagcatgatgagcatcagcgacagtgg 892

                                                                        
Query: 241  tgtcagtaatggagacaatgctcaaggggacaacagtttggtagatatggcttgtgcaac 300
            ||||||||||  ||||||||||  |||||||| ||||||| ||||||| ||| |||||||
Sbjct: 891  tgtcagtaatcaagacaatgctgcaggggacagcagtttgttagatattgctagtgcaac 832



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 316 caagcaaaagtctgtgatcggctcatcttccgaagctggtctgaaccttcttccacctac 375
           ||||| ||||||| |||| ||||| || || ||||||||  ||||||||||||||| | |
Sbjct: 804 caagccaaagtctttgataggctcctcatctgaagctggcgtgaaccttcttccacttgc 745

                                            
Query: 376 taatgatcagacagctgtatctgtggattcgac 408
           || ||||||||  |||| ||| |||||||||||
Sbjct: 744 tactgatcagatggctggatccgtggattcgac 712

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>dbj|AK121630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050D14, full
           insert sequence
          Length = 2203

 Score =  258 bits (130), Expect = 2e-65
 Identities = 258/300 (86%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgccatggtaccgctgcctagnagngaacacctcactttgccaaaattgtgactggaa 60
           ||||||||||| ||||||||| | ||  ||  |||| ||||||||||||||||| |||||
Sbjct: 482 cctgccatggt-ccgctgccttgtagaaaatgcctcgctttgccaaaattgtgattggaa 540

                                                                       
Query: 61  tgggcatagtgctggatcctccgctgctggacacaaaagacagaatataaactgctattc 120
           ||||||||||||||| || || |||||||| || || || ||||  ||||||||||| ||
Sbjct: 541 tgggcatagtgctgggtcttcagctgctggtcataagaggcagaccataaactgctactc 600

                                                                       
Query: 121 ggggtgcccatcatctgcagagctttcaagaatgtggtcattcattttggatattcctaa 180
            ||||||||||||||| |||| ||||||| ||| ||| ||||  ||| ||||||||||||
Sbjct: 601 agggtgcccatcatcttcagaactttcaaaaatctggacatttgtttcggatattcctaa 660

                                                                       
Query: 181 tgtagctcctgagctgaattgtgagcaagtaataagcatgatgagcatcagtgacagtgc 240
           |||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||||| 
Sbjct: 661 tgtagctcctgagccgaattgcgagcaagggataagcatgatgagcatcagcgacagtgg 720

                                                                       
Query: 241 tgtcagtaatggagacaatgctcaaggggacaacagtttggtagatatggcttgtgcaac 300
           ||||||||||  ||||||||||  |||||||| ||||||| ||||||| ||| |||||||
Sbjct: 721 tgtcagtaatcaagacaatgctgcaggggacagcagtttgttagatattgctagtgcaac 780



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 160/198 (80%), Gaps = 6/198 (3%)
 Strand = Plus / Plus

                                                                        
Query: 316  caagcaaaagtctgtgatcggctcatcttccgaagctggtctgaaccttcttccacctac 375
            ||||| ||||||| |||| ||||| || || ||||||||  ||||||||||||||| | |
Sbjct: 808  caagccaaagtctttgataggctcctcatctgaagctggcgtgaaccttcttccacttgc 867

                                                                        
Query: 376  taatgatcagacagctgtatctgtggattcgacgacacctaag------tatacgccaga 429
            || ||||||||  |||| ||| |||||||||||  || |||||      |||||| ||||
Sbjct: 868  tactgatcagatggctggatccgtggattcgacatcagctaaggtgccctatacggcaga 927

                                                                        
Query: 430  caagcatatgttcagcaaggatagcatatatgaagatttctctatggatgatattgatct 489
            | |  ||||||||||||| || || |||||||||||||||| | |||| ||| |||||||
Sbjct: 928  ccaagatatgttcagcaaagacagtatatatgaagatttctgtgtggacgatgttgatct 987

                              
Query: 490  gagttacgaaaactatga 507
             |||| |||||| |||||
Sbjct: 988  tagtttcgaaaattatga 1005

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>dbj|AK098865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A08, full
           insert sequence
          Length = 2204

 Score =  258 bits (130), Expect = 2e-65
 Identities = 258/300 (86%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgccatggtaccgctgcctagnagngaacacctcactttgccaaaattgtgactggaa 60
           ||||||||||| ||||||||| | ||  ||  |||| ||||||||||||||||| |||||
Sbjct: 484 cctgccatggt-ccgctgccttgtagaaaatgcctcgctttgccaaaattgtgattggaa 542

                                                                       
Query: 61  tgggcatagtgctggatcctccgctgctggacacaaaagacagaatataaactgctattc 120
           ||||||||||||||| || || |||||||| || || || ||||  ||||||||||| ||
Sbjct: 543 tgggcatagtgctgggtcttcagctgctggtcataagaggcagaccataaactgctactc 602

                                                                       
Query: 121 ggggtgcccatcatctgcagagctttcaagaatgtggtcattcattttggatattcctaa 180
            ||||||||||||||| |||| ||||||| ||| ||| ||||  ||| ||||||||||||
Sbjct: 603 agggtgcccatcatcttcagaactttcaaaaatctggacatttgtttcggatattcctaa 662

                                                                       
Query: 181 tgtagctcctgagctgaattgtgagcaagtaataagcatgatgagcatcagtgacagtgc 240
           |||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||||| 
Sbjct: 663 tgtagctcctgagccgaattgcgagcaagggataagcatgatgagcatcagcgacagtgg 722

                                                                       
Query: 241 tgtcagtaatggagacaatgctcaaggggacaacagtttggtagatatggcttgtgcaac 300
           ||||||||||  ||||||||||  |||||||| ||||||| ||||||| ||| |||||||
Sbjct: 723 tgtcagtaatcaagacaatgctgcaggggacagcagtttgttagatattgctagtgcaac 782



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 160/198 (80%), Gaps = 6/198 (3%)
 Strand = Plus / Plus

                                                                        
Query: 316  caagcaaaagtctgtgatcggctcatcttccgaagctggtctgaaccttcttccacctac 375
            ||||| ||||||| |||| ||||| || || ||||||||  ||||||||||||||| | |
Sbjct: 810  caagccaaagtctttgataggctcctcatctgaagctggcgtgaaccttcttccacttgc 869

                                                                        
Query: 376  taatgatcagacagctgtatctgtggattcgacgacacctaag------tatacgccaga 429
            || ||||||||  |||| ||| |||||||||||  || |||||      |||||| ||||
Sbjct: 870  tactgatcagatggctggatccgtggattcgacatcagctaaggtgccctatacggcaga 929

                                                                        
Query: 430  caagcatatgttcagcaaggatagcatatatgaagatttctctatggatgatattgatct 489
            | |  ||||||||||||| || || |||||||||||||||| | |||| ||| |||||||
Sbjct: 930  ccaagatatgttcagcaaagacagtatatatgaagatttctgtgtggacgatgttgatct 989

                              
Query: 490  gagttacgaaaactatga 507
             |||| |||||| |||||
Sbjct: 990  tagtttcgaaaattatga 1007

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>dbj|AK072192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152B04, full
           insert sequence
          Length = 2245

 Score =  258 bits (130), Expect = 2e-65
 Identities = 258/300 (86%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgccatggtaccgctgcctagnagngaacacctcactttgccaaaattgtgactggaa 60
           ||||||||||| ||||||||| | ||  ||  |||| ||||||||||||||||| |||||
Sbjct: 457 cctgccatggt-ccgctgccttgtagaaaatgcctcgctttgccaaaattgtgattggaa 515

                                                                       
Query: 61  tgggcatagtgctggatcctccgctgctggacacaaaagacagaatataaactgctattc 120
           ||||||||||||||| || || |||||||| || || || ||||  ||||||||||| ||
Sbjct: 516 tgggcatagtgctgggtcttcagctgctggtcataagaggcagaccataaactgctactc 575

                                                                       
Query: 121 ggggtgcccatcatctgcagagctttcaagaatgtggtcattcattttggatattcctaa 180
            ||||||||||||||| |||| ||||||| ||| ||| ||||  ||| ||||||||||||
Sbjct: 576 agggtgcccatcatcttcagaactttcaaaaatctggacatttgtttcggatattcctaa 635

                                                                       
Query: 181 tgtagctcctgagctgaattgtgagcaagtaataagcatgatgagcatcagtgacagtgc 240
           |||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||||| 
Sbjct: 636 tgtagctcctgagccgaattgcgagcaagggataagcatgatgagcatcagcgacagtgg 695

                                                                       
Query: 241 tgtcagtaatggagacaatgctcaaggggacaacagtttggtagatatggcttgtgcaac 300
           ||||||||||  ||||||||||  |||||||| ||||||| ||||||| ||| |||||||
Sbjct: 696 tgtcagtaatcaagacaatgctgcaggggacagcagtttgttagatattgctagtgcaac 755



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 160/198 (80%), Gaps = 6/198 (3%)
 Strand = Plus / Plus

                                                                       
Query: 316 caagcaaaagtctgtgatcggctcatcttccgaagctggtctgaaccttcttccacctac 375
           ||||| ||||||| |||| ||||| || || ||||||||  ||||||||||||||| | |
Sbjct: 783 caagccaaagtctttgataggctcctcatctgaagctggcgtgaaccttcttccacttgc 842

                                                                       
Query: 376 taatgatcagacagctgtatctgtggattcgacgacacctaag------tatacgccaga 429
           || ||||||||  |||| ||| |||||||||||  || |||||      |||||| ||||
Sbjct: 843 tactgatcagatggctggatccgtggattcgacatcagctaaggtgccctatacggcaga 902

                                                                       
Query: 430 caagcatatgttcagcaaggatagcatatatgaagatttctctatggatgatattgatct 489
           | |  ||||||||||||| || || |||||||||||||||| | |||| ||| |||||||
Sbjct: 903 ccaagatatgttcagcaaagacagtatatatgaagatttctgtgtggacgatgttgatct 962

                             
Query: 490 gagttacgaaaactatga 507
            |||| |||||| |||||
Sbjct: 963 tagtttcgaaaattatga 980

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>ref|XM_467550.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2024

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  gaacacctcactttgccaaaattgtgactggaatgggcatagtgctggatcctccgctgc 87
           ||||||||||||||||||||| |||||||||||||| ||| | || | |||||| |||||
Sbjct: 497 gaacacctcactttgccaaaactgtgactggaatggacatggggcagcatcctcagctgc 556

                                                                       
Query: 88  tggacacaaaagacagaatataaactgctattcggggtgcccatcatctgcagagctttc 147
           ||| || ||||| ||||  |||||||| || |||||||||||||| || |||||||| ||
Sbjct: 557 tgggcataaaaggcagaccataaactgttactcggggtgcccatcgtcggcagagctctc 616

                                                                       
Query: 148 aagaatgtggtcattcattttggatattcctaatgtagctcctgagctgaattgtgagca 207
            ||||| ||||| || | | ||||||| || | ||||||| | ||||  || |||||| |
Sbjct: 617 gagaatctggtcctttagtatggatatcccaactgtagctgcggagccaaactgtgagga 676

                                
Query: 208 agtaataagcatgatgagcat 228
           || ||||| ||||||||||||
Sbjct: 677 aggaataaacatgatgagcat 697

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Plus

                                                                            
Query: 28       gaacacctcactttgccaaaattgtgactggaatgggcatagtgctggatcctccgctgc 87
                ||||||||||||||||||||| |||||||||||||| ||| | || | |||||| |||||
Sbjct: 30114987 gaacacctcactttgccaaaactgtgactggaatggacatggggcagcatcctcagctgc 30115046

                                                                            
Query: 88       tggacacaaaagacagaatataaactgctattcggggtgcccatcatctgcagagctttc 147
                ||| || ||||| ||||  |||||||| || |||||||||||||| || |||||||| ||
Sbjct: 30115047 tgggcataaaaggcagaccataaactgttactcggggtgcccatcgtcggcagagctctc 30115106

                                                                            
Query: 148      aagaatgtggtcattcattttggatattcctaatgtagctcctgagctgaattgtgagca 207
                 ||||| ||||| || | | ||||||| || | ||||||| | ||||  || |||||| |
Sbjct: 30115107 gagaatctggtcctttagtatggatatcccaactgtagctgcggagccaaactgtgagga 30115166

                                     
Query: 208      agtaataagcatgatgagcat 228
                || ||||| ||||||||||||
Sbjct: 30115167 aggaataaacatgatgagcat 30115187

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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0685G12
          Length = 149155

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Plus

                                                                         
Query: 28    gaacacctcactttgccaaaattgtgactggaatgggcatagtgctggatcctccgctgc 87
             ||||||||||||||||||||| |||||||||||||| ||| | || | |||||| |||||
Sbjct: 94584 gaacacctcactttgccaaaactgtgactggaatggacatggggcagcatcctcagctgc 94643

                                                                         
Query: 88    tggacacaaaagacagaatataaactgctattcggggtgcccatcatctgcagagctttc 147
             ||| || ||||| ||||  |||||||| || |||||||||||||| || |||||||| ||
Sbjct: 94644 tgggcataaaaggcagaccataaactgttactcggggtgcccatcgtcggcagagctctc 94703

                                                                         
Query: 148   aagaatgtggtcattcattttggatattcctaatgtagctcctgagctgaattgtgagca 207
              ||||| ||||| || | | ||||||| || | ||||||| | ||||  || |||||| |
Sbjct: 94704 gagaatctggtcctttagtatggatatcccaactgtagctgcggagccaaactgtgagga 94763

                                  
Query: 208   agtaataagcatgatgagcat 228
             || ||||| ||||||||||||
Sbjct: 94764 aggaataaacatgatgagcat 94784

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>dbj|AK071630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D03, full
           insert sequence
          Length = 2024

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  gaacacctcactttgccaaaattgtgactggaatgggcatagtgctggatcctccgctgc 87
           ||||||||||||||||||||| |||||||||||||| ||| | || | |||||| |||||
Sbjct: 497 gaacacctcactttgccaaaactgtgactggaatggacatggggcagcatcctcagctgc 556

                                                                       
Query: 88  tggacacaaaagacagaatataaactgctattcggggtgcccatcatctgcagagctttc 147
           ||| || ||||| ||||  |||||||| || |||||||||||||| || |||||||| ||
Sbjct: 557 tgggcataaaaggcagaccataaactgttactcggggtgcccatcgtcggcagagctctc 616

                                                                       
Query: 148 aagaatgtggtcattcattttggatattcctaatgtagctcctgagctgaattgtgagca 207
            ||||| ||||| || | | ||||||| || | ||||||| | ||||  || |||||| |
Sbjct: 617 gagaatctggtcctttagtatggatatcccaactgtagctgcggagccaaactgtgagga 676

                                
Query: 208 agtaataagcatgatgagcat 228
           || ||||| ||||||||||||
Sbjct: 677 aggaataaacatgatgagcat 697

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>dbj|AB001888.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger
           protein, complete cds, clone:S3574
          Length = 2047

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  gaacacctcactttgccaaaattgtgactggaatgggcatagtgctggatcctccgctgc 87
           ||||||||||||||||||||| |||||||||||||| ||| | || | |||||| |||||
Sbjct: 449 gaacacctcactttgccaaaactgtgactggaatggacatggggcagcatcctcagctgc 508

                                                                       
Query: 88  tggacacaaaagacagaatataaactgctattcggggtgcccatcatctgcagagctttc 147
           ||| || ||||| ||||  |||||||| || |||||||||||||| || |||||||| ||
Sbjct: 509 tgggcataaaaggcagaccataaactgttactcggggtgcccatcgtcggcagagctctc 568

                                                                       
Query: 148 aagaatgtggtcattcattttggatattcctaatgtagctcctgagctgaattgtgagca 207
            ||||| ||||| || | | ||||||| || | ||||||| | ||||  || |||||| |
Sbjct: 569 gagaatctggtcctttagtatggatatcccaactgtagctgcggagccaaactgtgagga 628

                                
Query: 208 agtaataagcatgatgagcat 228
           || ||||| ||||||||||||
Sbjct: 629 aggaataaacatgatgagcat 649

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>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0055N24
          Length = 142702

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 435    atatgttcagcaaggatagcatatatgaagatttctctatggatgatattgatctgagtt 494
              ||||||||||||| || || |||||||||||||||| | |||| ||| ||||||| ||||
Sbjct: 141735 atatgttcagcaaagacagtatatatgaagatttctgtgtggacgatgttgatcttagtt 141676

                           
Query: 495    acgaaaactatga 507
               |||||| |||||
Sbjct: 141675 tcgaaaattatga 141663

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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1224304 aaaagacagaatataaactgcta 1224282

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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1272161 aaaagacagaatataaactgcta 1272139

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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1235417 aaaagacagaatataaactgcta 1235395

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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1131651 aaaagacagaatataaactgcta 1131629

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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1211597 aaaagacagaatataaactgcta 1211575

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>gb|AC027138.10| Staphylococcus aureus clone sabac-9, complete sequence
          Length = 46239

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 95    aaaagacagaatataaactgcta 117
             |||||||||||||||||||||||
Sbjct: 37011 aaaagacagaatataaactgcta 36989

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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1195631 aaaagacagaatataaactgcta 1195609

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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1195832 aaaagacagaatataaactgcta 1195810

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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1237800 aaaagacagaatataaactgcta 1237778

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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 95      aaaagacagaatataaactgcta 117
               |||||||||||||||||||||||
Sbjct: 1163435 aaaagacagaatataaactgcta 1163413

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>emb|CR394542.5| Zebrafish DNA sequence from clone DKEY-91I10 in linkage group 9, complete
              sequence
          Length = 193811

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 143    ctttcaagaatgtggtcattcattttggat 172
              ||||||||  ||||||||||||||||||||
Sbjct: 121936 ctttcaagcctgtggtcattcattttggat 121907

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>ref|XM_714965.1| Candida albicans SC5314 hypothetical protein (CaO19_7859), mRNA
          Length = 1179

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 149 agaatgtggtcattcattttg 169
           |||||||||||||||||||||
Sbjct: 21  agaatgtggtcattcattttg 41

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>ref|XM_714835.1| Candida albicans SC5314 hypothetical protein (CaO19_229), mRNA
          Length = 1179

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 149 agaatgtggtcattcattttg 169
           |||||||||||||||||||||
Sbjct: 21  agaatgtggtcattcattttg 41

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>emb|AL359987.13| Human DNA sequence from clone RP11-596A13 on chromosome 6, complete
             sequence
          Length = 189370

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 199   ttgtgagcaagtaataagcat 219
             |||||||||||||||||||||
Sbjct: 90365 ttgtgagcaagtaataagcat 90345

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>emb|AL021937.1|HS149A16 Human DNA sequence from clone RP1-149A16 on chromosome 22 Contains four
             novel genes (LOC339666, HSPC117), the RFPL3 gene for ret
             finger protein-like 3, a immunoglobulin lambda chain
             pseudogene, the RFPL3S gene for ret finger protein-like 3
             antisense, the BPIL2 gene for
             bactericidal/permeability-increasing protein-like 2, the
             5' end of the FBXO7 gene for F-box protein 7 and three CpG
             islands, complete sequence
          Length = 173354

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   caacagtttggtagatatggc 291
             |||||||||||||||||||||
Sbjct: 50130 caacagtttggtagatatggc 50110

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>gb|AC145339.34| Pan troglodytes clone rp43-58e4, complete sequence
          Length = 150845

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   caacagtttggtagatatggc 291
             |||||||||||||||||||||
Sbjct: 31290 caacagtttggtagatatggc 31310

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>ref|XM_415969.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC417724),
            mRNA
          Length = 2986

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  atgagcatcagtgacagtgc 240
            ||||||||||||||||||||
Sbjct: 1573 atgagcatcagtgacagtgc 1592

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>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5,
             complete sequence
          Length = 135495

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   aagacaagcaaaagtctgtg 331
             ||||||||||||||||||||
Sbjct: 90893 aagacaagcaaaagtctgtg 90912

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>ref|XM_445245.1| Candida glabrata CBS138, CAGL0C01617g partial mRNA
          Length = 717

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  ctggacacaaaagacagaat 106
           ||||||||||||||||||||
Sbjct: 358 ctggacacaaaagacagaat 377

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>gb|AC007558.3| Homo sapiens BAC clone RP11-148A10 from 7, complete sequence
          Length = 120141

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    ctttgccaaaattgtgactggaat 61
             ||||||||||||| ||||||||||
Sbjct: 61079 ctttgccaaaattctgactggaat 61102

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>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence
          Length = 558804

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     ctggacacaaaagacagaat 106
              ||||||||||||||||||||
Sbjct: 174975 ctggacacaaaagacagaat 174994

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>gb|AC161590.2| Mus musculus BAC clone RP24-300B21 from chromosome 9, complete sequence
          Length = 162840

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    gaacacctcactttgccaaa 47
             ||||||||||||||||||||
Sbjct: 80904 gaacacctcactttgccaaa 80923

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>emb|BX950873.9| Zebrafish DNA sequence from clone CH211-119G22 in linkage group 11,
             complete sequence
          Length = 154950

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   tgacagtgctgtcagtaatggaga 255
             ||||||| ||||||||||||||||
Sbjct: 23294 tgacagttctgtcagtaatggaga 23271

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>emb|BX548018.9| Zebrafish DNA sequence from clone DKEY-23O18 in linkage group 14,
             complete sequence
          Length = 113040

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    ctggacacaaaagacagaat 106
             ||||||||||||||||||||
Sbjct: 95879 ctggacacaaaagacagaat 95860

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>gb|AC079955.9| Homo sapiens chromosome 10 clone RP11-134O16, complete sequence
          Length = 192042

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    atcagtgacagtgctgtcag 246
              ||||||||||||||||||||
Sbjct: 153908 atcagtgacagtgctgtcag 153927

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>gb|AC156393.12| Mus musculus 10 BAC RP24-315E6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 164936

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    aagacaagcaaaagtctgtg 331
              ||||||||||||||||||||
Sbjct: 120177 aagacaagcaaaagtctgtg 120196

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>gb|AC158639.8| Mus musculus 10 BAC RP24-73H17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 199191

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   aagacaagcaaaagtctgtg 331
             ||||||||||||||||||||
Sbjct: 85791 aagacaagcaaaagtctgtg 85772

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>emb|BX927224.10| Zebrafish DNA sequence from clone CH211-278C2 in linkage group 19,
             complete sequence
          Length = 79151

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   tcatctgcagagctttcaag 150
             ||||||||||||||||||||
Sbjct: 39117 tcatctgcagagctttcaag 39098

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>emb|BX000361.8| Zebrafish DNA sequence from clone DKEY-181F18 in linkage group 20,
             complete sequence
          Length = 124183

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   cttgatgaagaagacaagcaaaag 325
             |||||||||| |||||||||||||
Sbjct: 94341 cttgatgaaggagacaagcaaaag 94364

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>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence
          Length = 240928

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   aagacaagcaaaagtctgtg 331
             ||||||||||||||||||||
Sbjct: 52482 aagacaagcaaaagtctgtg 52501

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>dbj|AB084353.1| Chloromonas rosae chloroplast psaB gene for P700 chlorophyll
           a-apoprotein A2, partial cds, strain:SAG 26.90
          Length = 507

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 295 tgcaacacttgatgaagaagacaa 318
           ||||||||||| ||||||||||||
Sbjct: 300 tgcaacacttgttgaagaagacaa 277

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>dbj|AB084349.1| Chloromonas palmelloides chloroplast psaB gene for P700 chlorophyll
            a-apoprotein A2, partial cds, strain:SAG 32.86
          Length = 1392

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 295  tgcaacacttgatgaagaagacaa 318
            ||||||||||| ||||||||||||
Sbjct: 1185 tgcaacacttgttgaagaagacaa 1162

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>dbj|AB084347.1| Chloromonas reticulata psaB gene for P700 chlorophyll a-apoprotein
           A2, partial cds, strain:UTEX 1970
          Length = 507

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 295 tgcaacacttgatgaagaagacaa 318
           ||||||||||| ||||||||||||
Sbjct: 300 tgcaacacttgttgaagaagacaa 277

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>dbj|AB084343.1| Chlamydomonas macrostellata chloroplast psaB gene for P700
            chlorophyll a-apoprotein A2, partial cds, strain:SAG
            72.81
          Length = 1392

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 295  tgcaacacttgatgaagaagacaa 318
            ||||||||||| ||||||||||||
Sbjct: 1185 tgcaacacttgttgaagaagacaa 1162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,610,992
Number of Sequences: 3902068
Number of extensions: 4610992
Number of successful extensions: 106096
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105784
Number of HSP's gapped (non-prelim): 312
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result