ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4h02 |
|---|---|
| Clone Library Name | barley_pub |
>RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor| Length = 392 Score = 98.2 bits (243), Expect = 1e-20 Identities = 55/160 (34%), Positives = 80/160 (50%) Frame = +3 Query: 66 TLDTCEHPRTLPGQKAGCATXXXXXXXXXXXXXGRRNIRAFSAMDLPMDAPGTPALRGKY 245 T++ CE R + G++ CAT G+ ++RA S +AP KY Sbjct: 242 TIEECE-ARKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAP-----MQKY 295 Query: 246 NVTAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAV 425 + AA S + V CH YP+AV+YCH + T Y V L E + + +AV Sbjct: 296 KIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAMMTTVYAVPL----EGENGMRAKAVAV 351 Query: 426 CHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWVS 545 CH +TS W+P + F++ KV PG V VCHFL + ++W S Sbjct: 352 CHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVWFS 391
>Y639_ARATH (O80760) Probable polygalacturonase non-catalytic subunit At1g60390| precursor (Aromatic-rich glycoprotein At1g60390) Length = 624 Score = 69.7 bits (169), Expect = 6e-12 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = +3 Query: 273 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVM----AVCHLDT 440 G + V+CH YPY +YYCH+ Y L P ++E + A+CH+DT Sbjct: 534 GDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLD------PKSLEKINHGVAICHIDT 587 Query: 441 SLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 551 S WSP + F GPG + VCH++ + + W +D Sbjct: 588 SAWSPSHGAFLALGSGPGQIEVCHWIFENDMTWNIID 624
>GP1_LYCES (Q40161) Polygalacturonase-1 non-catalytic beta subunit precursor| (AroGP1) (Polygalacturonase converter) (PG converter) Length = 630 Score = 68.2 bits (165), Expect = 2e-11 Identities = 29/93 (31%), Positives = 48/93 (51%) Frame = +3 Query: 273 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 452 G ++ V+CH YPY +YYCH+ Y + ++ ++ +A+CH+DTS W Sbjct: 540 GKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADI--LDPNSKVKINHGVAICHVDTSSWG 597 Query: 453 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 551 P + F GPG + VCH++ + + W D Sbjct: 598 PSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630
>GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP3 precursor| Length = 632 Score = 67.8 bits (164), Expect = 2e-11 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 1/162 (0%) Frame = +3 Query: 69 LDTCEHPRTLPGQKAGCATXXXXXXXXXXXXXGRRNIRAFSAMDLPMDAPGTPALRGKYN 248 L CE + PG+ C GR + T +G Sbjct: 482 LSECERAPS-PGETKQCVNSAEDMIDFATSVLGRNVV--------VRTTENTNGSKGNIM 532 Query: 249 VTAARKLSGSS-SEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAV 425 + + + ++G ++ V+CH YP +YYCH+ Y + ++ ++ +A+ Sbjct: 533 IGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAI 590 Query: 426 CHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 551 CH+DTS W P++ F GPG + VCH++ + + W + D Sbjct: 591 CHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTWATAD 632
>GP2_LYCES (P93217) Polygalacturonase non-catalytic subunit AroGP2 precursor| Length = 629 Score = 67.4 bits (163), Expect = 3e-11 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 1/162 (0%) Frame = +3 Query: 69 LDTCEHPRTLPGQKAGCATXXXXXXXXXXXXXGRRNIRAFSAMDLPMDAPGTPALRGKYN 248 L CE + PG+ C GR + T +G Sbjct: 479 LSECERAPS-PGETKQCVNSAEDMIDFATSVLGRNVV--------VRTTENTNGSKGNIM 529 Query: 249 VTAARKLSGSS-SEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAV 425 + + + ++G ++ V+CH YP +YYCH+ Y + ++ ++ +A+ Sbjct: 530 IGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAI 587 Query: 426 CHLDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 551 CH+DTS W P++ F GPG + VCH++ + + W + D Sbjct: 588 CHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTWATAD 629
>JP650_ARATH (P92990) Probable polygalacturonase non-catalytic subunit JP650| precursor (Aromatic-rich glycoprotein JP650) Length = 626 Score = 65.9 bits (159), Expect = 8e-11 Identities = 30/93 (32%), Positives = 47/93 (50%) Frame = +3 Query: 273 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 452 G ++ V+CH YPY +YYCH+ Y L +E ++ +A+CH+DTS W Sbjct: 536 GKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADL--LELNSKKKINHGIAICHMDTSSWG 593 Query: 453 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 551 P + F PG + VCH++ + + W D Sbjct: 594 PSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626
>JP630_ARATH (P92982) Probable polygalacturonase non-catalytic subunit JP630| precursor (Aromatic-rich glycoprotein JP630) Length = 622 Score = 63.2 bits (152), Expect = 5e-10 Identities = 29/93 (31%), Positives = 46/93 (49%) Frame = +3 Query: 273 GSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCHLDTSLWS 452 G ++ V+CH YPY +YYCH+ Y L ++ + +A+CH+DTS W Sbjct: 532 GRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDL--LDPKSKAKINHGIAICHMDTSAWG 589 Query: 453 PKNPFFELHKVGPGDVAVCHFLTKLSIIWVSVD 551 + F L PG + VCH++ + + W D Sbjct: 590 ANHGAFMLLGSRPGQIEVCHWIFENDMNWAIAD 622
>EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor| Length = 268 Score = 57.8 bits (138), Expect = 2e-08 Identities = 43/157 (27%), Positives = 67/157 (42%) Frame = +3 Query: 72 DTCEHPRTLPGQKAGCATXXXXXXXXXXXXXGRRNIRAFSAMDLPMDAPGTPALRGKYNV 251 D C P + K C + G I+A S+ P + +Y V Sbjct: 118 DFCYSPTAIAEHKH-CVSSLKSMIDQVISHFGSTKIKAISSNFAPY--------QDQYVV 168 Query: 252 TAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCH 431 +K+ ++ V CH L + V+ CH T AY+V+L + + + A + VCH Sbjct: 169 EDVKKVGDNA---VMCHRLNFEKVVFNCHQVRETTAYVVSLVASDGTKTKA----LTVCH 221 Query: 432 LDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 542 DT +P+ +E +V PG V VCHF+ + WV Sbjct: 222 HDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWV 257
>EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor| Length = 268 Score = 57.8 bits (138), Expect = 2e-08 Identities = 43/157 (27%), Positives = 67/157 (42%) Frame = +3 Query: 72 DTCEHPRTLPGQKAGCATXXXXXXXXXXXXXGRRNIRAFSAMDLPMDAPGTPALRGKYNV 251 D C P + K C + G I+A S+ P + +Y V Sbjct: 118 DFCYSPTAIAEHKH-CVSSLKSMIDQVISHFGSTKIKAISSNFAPY--------QDQYVV 168 Query: 252 TAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCH 431 +K+ ++ V CH L + V+ CH T AY+V+L + + + A + VCH Sbjct: 169 EDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----LTVCH 221 Query: 432 LDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 542 DT +P+ +E +V PG V VCHF+ + WV Sbjct: 222 HDTRGMNPE-LLYEALEVTPGTVPVCHFIGNKAAAWV 257
>SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1)| Length = 268 Score = 53.9 bits (128), Expect = 3e-07 Identities = 42/157 (26%), Positives = 66/157 (42%) Frame = +3 Query: 72 DTCEHPRTLPGQKAGCATXXXXXXXXXXXXXGRRNIRAFSAMDLPMDAPGTPALRGKYNV 251 D C P + K C + G I+A S+ P + +Y V Sbjct: 118 DFCYSPTAIAEHKH-CVSSLKSMIDQVISHFGSTKIKAISSNFAPY--------QDQYVV 168 Query: 252 TAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCH 431 +K+ ++ V CH L + V+ CH T AY+V+L + + + A + VCH Sbjct: 169 EDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----LTVCH 221 Query: 432 LDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 542 DT +P+ +E +V G V VCHF+ + WV Sbjct: 222 HDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWV 257
>EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor| Length = 268 Score = 53.9 bits (128), Expect = 3e-07 Identities = 42/157 (26%), Positives = 66/157 (42%) Frame = +3 Query: 72 DTCEHPRTLPGQKAGCATXXXXXXXXXXXXXGRRNIRAFSAMDLPMDAPGTPALRGKYNV 251 D C P + K C + G I+A S+ P + +Y V Sbjct: 118 DFCYSPTAIAEHKH-CVSSLKSMIDQVISHFGSTKIKAISSNFAPY--------QDQYVV 168 Query: 252 TAARKLSGSSSEVVTCHDLTYPYAVYYCHTSSPTAAYMVTLTSVEEDTSPATMEVMAVCH 431 +K+ ++ V CH L + V+ CH T AY+V+L + + + A + VCH Sbjct: 169 EDVKKVGDNA---VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDGTKTKA----LTVCH 221 Query: 432 LDTSLWSPKNPFFELHKVGPGDVAVCHFLTKLSIIWV 542 DT +P+ +E +V G V VCHF+ + WV Sbjct: 222 HDTRGMNPE-LLYEALEVTLGTVPVCHFIGNKAAAWV 257
>ZN689_RAT (Q99PJ7) Zinc finger protein 689 (Transcription factor HIT-39)| Length = 500 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = -1 Query: 324 PRKGRSGHGRSRPQMMTRRASVQP----SRCTYP*APVSLGHPWVDPWRRTHGC 175 PRKG+ G S+P+++ R+ S P CT+P P H ++ + C Sbjct: 126 PRKGKRGRKPSKPRLIARQTSGGPICPDCGCTFPDLPALESHKCAQNLKKPYPC 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,660,879 Number of Sequences: 219361 Number of extensions: 1402486 Number of successful extensions: 4539 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4526 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
