ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U38791.1|ZMU38791 Zea mays unknown protein mRNA, complete cds 78 4e-11
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
6dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 44 0.50
7gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, com... 40 7.8
8emb|BX324209.11| Human DNA sequence from clone RP13-388O5 on chr... 40 7.8
9emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E1... 40 7.8
10ref|XM_794541.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 7.8
11emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cos... 40 7.8
12gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, compl... 40 7.8
13gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, compl... 40 7.8
14gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, comp... 40 7.8
15dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
16dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
17dbj|AK064437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
18gb|AC002100.1|AC002100 Genomic sequence from Human 9q34, complet... 40 7.8

>gb|U38791.1|ZMU38791 Zea mays unknown protein mRNA, complete cds
          Length = 2314

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                        
Query: 53   agagatacggtggacgctggacacctgcgagcacccacggacgctccccggccagaaagc 112
            ||||||||||| |||||| |||||||||||| || | ||  ||||||||||| |||| ||
Sbjct: 1674 agagatacggtcgacgctcgacacctgcgagaacacgcgcccgctccccggcgagaaggc 1733

                                           
Query: 113  aggctgcgccacctccctcgagtccctcgcc 143
             | ||||| ||||||||||||||| ||||||
Sbjct: 1734 cgactgcgacacctccctcgagtctctcgcc 1764



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 297  tgccatgacctgacctacccttacgcggtgtactactgccacac 340
            |||||||||||||| ||||| ||||| |||| ||||||||||||
Sbjct: 1912 tgccatgacctgacgtacccctacgccgtgttctactgccacac 1955



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 422  cgtgtgccaccttgacacgtcattgtggag 451
            |||||||||||| |||||||| ||||||||
Sbjct: 2031 cgtgtgccacctcgacacgtcgttgtggag 2060



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                            
Query: 95       gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
                |||||| ||| |||| || ||||||||||||||||||||||| |||||||| ||  | ||
Sbjct: 11160493 gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 11160552

                                                        
Query: 155      gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
                ||| ||||| |||| |||  || |||| ||||||||||||
Sbjct: 11160553 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 11160592



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 21       atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
                |||||||| |||||||||||||||||| |  | |||||||||||| |||| |||||||||
Sbjct: 11160413 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 11160472

                 
Query: 81       g 81
                |
Sbjct: 11160473 g 11160473



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 394      cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
                |||||||||||| ||||||||   | |||||||||||||| ||||||||
Sbjct: 11160852 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 11160900



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 502      ccgtgtgccactttctcactaagctgagcatcatctgggt 541
                ||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 11160960 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 11160999



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                    
Query: 288      gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
                |||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 11160722 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 11160773



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 420     gccgtgtgccaccttgacacgtca 443
               |||||||||||||| |||||||||
Sbjct: 9873123 gccgtgtgccacctggacacgtca 9873100



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>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0042E12
          Length = 164688

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                         
Query: 95    gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
             |||||| ||| |||| || ||||||||||||||||||||||| |||||||| ||  | ||
Sbjct: 35315 gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 35374

                                                     
Query: 155   gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
             ||| ||||| |||| |||  || |||| ||||||||||||
Sbjct: 35375 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 35414



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 21    atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
             |||||||| |||||||||||||||||| |  | |||||||||||| |||| |||||||||
Sbjct: 35235 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 35294

              
Query: 81    g 81
             |
Sbjct: 35295 g 35295



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 394   cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
             |||||||||||| ||||||||   | |||||||||||||| ||||||||
Sbjct: 35674 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 35722



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 502   ccgtgtgccactttctcactaagctgagcatcatctgggt 541
             ||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 35782 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 35821



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 288   gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
             |||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 35544 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 35595



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>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1217_C01
          Length = 100180

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                         
Query: 95    gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
             |||||| ||| |||| || ||||||||||||||||||||||| |||||||| ||  | ||
Sbjct: 90399 gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 90458

                                                     
Query: 155   gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
             ||| ||||| |||| |||  || |||| ||||||||||||
Sbjct: 90459 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 90498



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 21    atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
             |||||||| |||||||||||||||||| |  | |||||||||||| |||| |||||||||
Sbjct: 90319 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 90378

              
Query: 81    g 81
             |
Sbjct: 90379 g 90379



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 394   cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
             |||||||||||| ||||||||   | |||||||||||||| ||||||||
Sbjct: 90758 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 90806



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 502   ccgtgtgccactttctcactaagctgagcatcatctgggt 541
             ||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 90866 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 90905



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 288   gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
             |||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 90628 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 90679



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>dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H06, full
            insert sequence
          Length = 1731

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 95   gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
            |||||| ||| |||| || ||||||||||||||||||||||| |||||||| ||  | ||
Sbjct: 979  gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 1038

                                                    
Query: 155  gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
            ||| ||||| |||| |||  || |||| ||||||||||||
Sbjct: 1039 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 1078



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 21  atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
           |||||||| |||||||||||||||||| |  | |||||||||||| |||| |||||||||
Sbjct: 899 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 958

            
Query: 81  g 81
           |
Sbjct: 959 g 959



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 394  cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
            |||||||||||| ||||||||   | |||||||||||||| ||||||||
Sbjct: 1338 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 1386



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 502  ccgtgtgccactttctcactaagctgagcatcatctgggt 541
            ||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 1446 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 1485



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 288  gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
            |||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 1208 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 1259



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 333     tgccacacatccagccctacgg 354
               ||||||||||||||||||||||
Sbjct: 1929308 tgccacacatccagccctacgg 1929287



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>gb|AC100788.8| Homo sapiens chromosome 17, clone CTD-2373H9, complete sequence
          Length = 126502

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ccacctccctcgagtccctc 140
             ||||||||||||||||||||
Sbjct: 69634 ccacctccctcgagtccctc 69653



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>emb|BX324209.11| Human DNA sequence from clone RP13-388O5 on chromosome 9, complete
             sequence
          Length = 58696

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   tggaggtcatggccgtgtgc 428
             ||||||||||||||||||||
Sbjct: 29071 tggaggtcatggccgtgtgc 29090



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>emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E11 on chromosome 1p35.1-36.23
              Contains the 5' end of a novel gene, the C1orf33 gene for
              chromosome 1 open reading frame 33, four novel genes, the
              AKR7A3 gene for aldo-keto reductase family 7, member A3
              (aflatoxin aldehyde reductase), the  AKR7A2 gene for
              aldo-keto reductase family 7, member A2 (aflatoxin aldehyde
              reductase), the 3' end of the CAPZB gene for capping
              protein (actin filament) muscle Z-line, beta and two CpG
              islands, complete sequence
          Length = 154130

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    gtgccactttctcactaagc 525
              ||||||||||||||||||||
Sbjct: 145309 gtgccactttctcactaagc 145290



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>ref|XM_794541.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC574803 (LOC574803), mRNA
          Length = 634

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 447 tggagcccgaagaatccgttctttgagc 474
           ||||| ||||||||||||||| ||||||
Sbjct: 184 tggagaccgaagaatccgttccttgagc 211



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>emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cosmid contig 62D11
          Length = 102165

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 422   cgtgtgccaccttgacacgt 441
             ||||||||||||||||||||
Sbjct: 27932 cgtgtgccaccttgacacgt 27951



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>gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, complete sequence
          Length = 91874

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  tactactgccacacatccag 346
            ||||||||||||||||||||
Sbjct: 8269 tactactgccacacatccag 8288



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>gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, complete sequence
          Length = 182564

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   tactactgccacacatccag 346
             ||||||||||||||||||||
Sbjct: 47660 tactactgccacacatccag 47641



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>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence
          Length = 186972

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tactactgccacacatccag 346
             ||||||||||||||||||||
Sbjct: 30914 tactactgccacacatccag 30933



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>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 420    gccgtgtgccaccttgacacgtca 443
              |||||||||||||| |||||||||
Sbjct: 163365 gccgtgtgccacctggacacgtca 163342



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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 420   gccgtgtgccaccttgacacgtca 443
             |||||||||||||| |||||||||
Sbjct: 69758 gccgtgtgccacctggacacgtca 69735



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>dbj|AK064437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D10, full
           insert sequence
          Length = 1379

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 420 gccgtgtgccaccttgacacgtca 443
           |||||||||||||| |||||||||
Sbjct: 951 gccgtgtgccacctggacacgtca 974



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>gb|AC002100.1|AC002100 Genomic sequence from Human 9q34, complete sequence
          Length = 33769

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 409  tggaggtcatggccgtgtgc 428
            ||||||||||||||||||||
Sbjct: 9048 tggaggtcatggccgtgtgc 9067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,178,914
Number of Sequences: 3902068
Number of extensions: 3178914
Number of successful extensions: 57181
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57081
Number of HSP's gapped (non-prelim): 100
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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