>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 71.9 bits (36), Expect = 2e-09
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 95 gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
|||||| ||| |||| || ||||||||||||||||||||||| |||||||| || | ||
Sbjct: 11160493 gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 11160552
Query: 155 gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
||| ||||| |||| ||| || |||| ||||||||||||
Sbjct: 11160553 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 11160592
Score = 65.9 bits (33), Expect = 1e-07
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 21 atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
|||||||| |||||||||||||||||| | | |||||||||||| |||| |||||||||
Sbjct: 11160413 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 11160472
Query: 81 g 81
|
Sbjct: 11160473 g 11160473
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 394 cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
|||||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 11160852 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 11160900
Score = 48.1 bits (24), Expect = 0.032
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 502 ccgtgtgccactttctcactaagctgagcatcatctgggt 541
||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 11160960 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 11160999
Score = 48.1 bits (24), Expect = 0.032
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 288 gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
|||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 11160722 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 11160773
Score = 40.1 bits (20), Expect = 7.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 420 gccgtgtgccaccttgacacgtca 443
|||||||||||||| |||||||||
Sbjct: 9873123 gccgtgtgccacctggacacgtca 9873100
>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0042E12
Length = 164688
Score = 71.9 bits (36), Expect = 2e-09
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 95 gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
|||||| ||| |||| || ||||||||||||||||||||||| |||||||| || | ||
Sbjct: 35315 gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 35374
Query: 155 gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
||| ||||| |||| ||| || |||| ||||||||||||
Sbjct: 35375 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 35414
Score = 65.9 bits (33), Expect = 1e-07
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 21 atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
|||||||| |||||||||||||||||| | | |||||||||||| |||| |||||||||
Sbjct: 35235 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 35294
Query: 81 g 81
|
Sbjct: 35295 g 35295
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 394 cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
|||||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 35674 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 35722
Score = 48.1 bits (24), Expect = 0.032
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 502 ccgtgtgccactttctcactaagctgagcatcatctgggt 541
||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 35782 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 35821
Score = 48.1 bits (24), Expect = 0.032
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 288 gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
|||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 35544 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 35595
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1217_C01
Length = 100180
Score = 71.9 bits (36), Expect = 2e-09
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 95 gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
|||||| ||| |||| || ||||||||||||||||||||||| |||||||| || | ||
Sbjct: 90399 gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 90458
Query: 155 gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
||| ||||| |||| ||| || |||| ||||||||||||
Sbjct: 90459 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 90498
Score = 65.9 bits (33), Expect = 1e-07
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 21 atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
|||||||| |||||||||||||||||| | | |||||||||||| |||| |||||||||
Sbjct: 90319 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 90378
Query: 81 g 81
|
Sbjct: 90379 g 90379
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 394 cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
|||||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 90758 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 90806
Score = 48.1 bits (24), Expect = 0.032
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 502 ccgtgtgccactttctcactaagctgagcatcatctgggt 541
||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 90866 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 90905
Score = 48.1 bits (24), Expect = 0.032
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 288 gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
|||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 90628 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 90679
>dbj|AK106070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H06, full
insert sequence
Length = 1731
Score = 71.9 bits (36), Expect = 2e-09
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 95 gctccccggccagaaagcaggctgcgccacctccctcgagtccctcgccgagctgccggc 154
|||||| ||| |||| || ||||||||||||||||||||||| |||||||| || | ||
Sbjct: 979 gctcccgggcgagaaggccggctgcgccacctccctcgagtcgctcgccgacctcgccgc 1038
Query: 155 gtccctccttgggaggcgtaacatccgtgcgttctccgcc 194
||| ||||| |||| ||| || |||| ||||||||||||
Sbjct: 1039 gtcgctcctcgggacgcgcgacgtccgcgcgttctccgcc 1078
Score = 65.9 bits (33), Expect = 1e-07
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 21 atgttcgcaccggcgtccctcgccatgaccagagagatacggtggacgctggacacctgc 80
|||||||| |||||||||||||||||| | | |||||||||||| |||| |||||||||
Sbjct: 899 atgttcgcgccggcgtccctcgccatggcgcgcgagatacggtgggcgctcgacacctgc 958
Query: 81 g 81
|
Sbjct: 959 g 959
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 394 cctcgccggcgacgatggaggtcatggccgtgtgccaccttgacacgtc 442
|||||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 1338 cctcgccggcgaagatggaggcgctcgccgtgtgccacctggacacgtc 1386
Score = 48.1 bits (24), Expect = 0.032
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 502 ccgtgtgccactttctcactaagctgagcatcatctgggt 541
||||||||||||| ||||| ||||| |||||| |||||||
Sbjct: 1446 ccgtgtgccacttcctcaccaagctcagcatcgtctgggt 1485
Score = 48.1 bits (24), Expect = 0.032
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 288 gtcgtgacctgccatgacctgacctacccttacgcggtgtactactgccaca 339
|||||| | ||||| |||||||| ||||| ||||| |||| |||||||||||
Sbjct: 1208 gtcgtggcgtgccacgacctgacgtacccgtacgccgtgttctactgccaca 1259
>emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E11 on chromosome 1p35.1-36.23
Contains the 5' end of a novel gene, the C1orf33 gene for
chromosome 1 open reading frame 33, four novel genes, the
AKR7A3 gene for aldo-keto reductase family 7, member A3
(aflatoxin aldehyde reductase), the AKR7A2 gene for
aldo-keto reductase family 7, member A2 (aflatoxin aldehyde
reductase), the 3' end of the CAPZB gene for capping
protein (actin filament) muscle Z-line, beta and two CpG
islands, complete sequence
Length = 154130
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 506 gtgccactttctcactaagc 525
||||||||||||||||||||
Sbjct: 145309 gtgccactttctcactaagc 145290
>gb|AC002100.1|AC002100 Genomic sequence from Human 9q34, complete sequence
Length = 33769
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 409 tggaggtcatggccgtgtgc 428
||||||||||||||||||||
Sbjct: 9048 tggaggtcatggccgtgtgc 9067
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,178,914
Number of Sequences: 3902068
Number of extensions: 3178914
Number of successful extensions: 57181
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57081
Number of HSP's gapped (non-prelim): 100
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)