ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 74 2e-10
2dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 74 2e-10
3dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 74 2e-10
4dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mR... 74 2e-10
5dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
6dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
7gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 46 0.041
8gb|AY105847.1| Zea mays PCO081230 mRNA sequence 46 0.041
9emb|AL022243.3|SPCC364 S.pombe chromosome III cosmid c364 42 0.64
10ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical... 42 0.64
11ref|XM_507220.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 2.5
12ref|XM_482186.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.5
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
14dbj|AB117988.1| Oryza sativa (japonica cultivar-group) bip131 mR... 40 2.5
15dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
16dbj|AK099893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
17dbj|AK067513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
18ref|NM_103882.2| Arabidopsis thaliana DNA binding / transcriptio... 38 10.0
19ref|NM_202269.1| Arabidopsis thaliana DNA binding AT1G49950 tran... 38 10.0
20ref|NM_179458.1| Arabidopsis thaliana DNA binding / transcriptio... 38 10.0
21ref|NM_100272.1| Arabidopsis thaliana unknown protein AT1G03910 ... 38 10.0
22gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, com... 38 10.0
23gb|AY519539.1| Arabidopsis thaliana MYB transcription factor (At... 38 10.0
24gb|AC126944.3| Mus musculus BAC clone RP23-19A4 from chromosome ... 38 10.0
25gb|AC132319.3| Mus musculus BAC clone RP24-258I12 from chromosom... 38 10.0
26gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 10.0
27gb|BT009677.1| Arabidopsis thaliana At1g49950 mRNA, complete cds 38 10.0
28gb|AY152831.1| Felis catus clone PAC 6B1 major histocompatiblity... 38 10.0
29emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in... 38 10.0
30gb|U83624.1|ATU83624 Arabidopsis thaliana telomere repeat bindin... 38 10.0
31gb|U83623.1|ATU83623 Arabidopsis thaliana telomere repeat bindin... 38 10.0
32gb|AC091899.2| Homo sapiens chromosome 5 clone RP11-158D20, comp... 38 10.0
33gb|AY062736.1| Arabidopsis thaliana Unknown protein (At1g49950; ... 38 10.0
34gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, comp... 38 10.0
35emb|BX814217.1|CNS0ADFP Arabidopsis thaliana Full-length cDNA Co... 38 10.0
36emb|BX841926.1|CNS09Y2V Arabidopsis thaliana Full-length cDNA Co... 38 10.0
37dbj|AB206986.1| Bombyx mori ago2 mRNA for argonaute 2, complete cds 38 10.0
38gb|AC112696.4| Homo sapiens BAC clone RP11-444N22 from 2, comple... 38 10.0
39dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 10.0
40gb|AY087994.1| Arabidopsis thaliana clone 40229 mRNA, complete s... 38 10.0
41gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thali... 38 10.0
42dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 10.0
43gb|AY104122.1| Zea mays PCO092329 mRNA sequence 38 10.0
44gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 38 10.0
45emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 38 10.0
46gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 geno... 38 10.0 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 149      accaagaccaaggccccgctgncaaaggcgatcctgaagaggaagaaagccc 200
                ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 10790615 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagccc 10790666
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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 149   accaagaccaaggccccgctgncaaaggcgatcctgaagaggaagaaagccc 200
             ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 14338 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagccc 14389
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 149    accaagaccaaggccccgctgncaaaggcgatcctgaagaggaagaaagccc 200
              ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 127233 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagccc 127284
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>dbj|AB117987.1| Oryza sativa (japonica cultivar-group) bip103 mRNA for BRI1-KD
            interacting protein 103, complete cds
          Length = 2366

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                
Query: 149  accaagaccaaggccccgctgncaaaggcgatcctgaagaggaagaaagccc 200
            ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 1815 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagccc 1866
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>dbj|AK100527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101D09, full
            insert sequence
          Length = 2295

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                
Query: 149  accaagaccaaggccccgctgncaaaggcgatcctgaagaggaagaaagccc 200
            ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 1817 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagccc 1868
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>dbj|AK059253.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H05, full
           insert sequence
          Length = 1352

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 149 accaagaccaaggccccgctgncaaaggcgatcctgaagaggaagaaagccc 200
           ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 893 accaagagcaaggccccgctgccgaaggcgatcctgaggaggaagaaagccc 944
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 147     tcaccaagaccaaggccccgctg 169
               |||||||||||||||||||||||
Sbjct: 2663148 tcaccaagaccaaggccccgctg 2663170
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>gb|AY105847.1| Zea mays PCO081230 mRNA sequence
          Length = 1699

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 173  aaggcgatcctgaagaggaagaa 195
            |||||||||||||||||||||||
Sbjct: 1230 aaggcgatcctgaagaggaagaa 1252
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>emb|AL022243.3|SPCC364 S.pombe chromosome III cosmid c364
          Length = 14999

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   gatcctgaagaggaagaaagc 198
             |||||||||||||||||||||
Sbjct: 13749 gatcctgaagaggaagaaagc 13769
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>ref|NM_001022836.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC364.01),
           partial mRNA
          Length = 963

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 178 gatcctgaagaggaagaaagc 198
           |||||||||||||||||||||
Sbjct: 356 gatcctgaagaggaagaaagc 336
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>ref|XM_507220.1| PREDICTED Oryza sativa (japonica cultivar-group), P0671F11.9 mRNA
          Length = 2293

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaggcgatcctgaagaggaagaaa 196
            |||||| |||||||||||||||||
Sbjct: 1835 aaggcggtcctgaagaggaagaaa 1858
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>ref|XM_482186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2281

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaggcgatcctgaagaggaagaaa 196
            |||||| |||||||||||||||||
Sbjct: 1870 aaggcggtcctgaagaggaagaaa 1893
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 173      aaggcgatcctgaagaggaagaaa 196
                |||||| |||||||||||||||||
Sbjct: 18473082 aaggcggtcctgaagaggaagaaa 18473105
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>dbj|AB117988.1| Oryza sativa (japonica cultivar-group) bip131 mRNA for BRI1-KD
            interacting protein 131, complete cds
          Length = 2275

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaggcgatcctgaagaggaagaaa 196
            |||||| |||||||||||||||||
Sbjct: 1841 aaggcggtcctgaagaggaagaaa 1864
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>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0671F11
          Length = 159409

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   aaggcgatcctgaagaggaagaaa 196
             |||||| |||||||||||||||||
Sbjct: 55105 aaggcggtcctgaagaggaagaaa 55128
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>dbj|AK099893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113F23, full
            insert sequence
          Length = 2281

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaggcgatcctgaagaggaagaaa 196
            |||||| |||||||||||||||||
Sbjct: 1870 aaggcggtcctgaagaggaagaaa 1893
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>dbj|AK067513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110G07, full
            insert sequence
          Length = 2293

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aaggcgatcctgaagaggaagaaa 196
            |||||| |||||||||||||||||
Sbjct: 1835 aaggcggtcctgaagaggaagaaa 1858
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>ref|NM_103882.2| Arabidopsis thaliana DNA binding / transcription factor AT1G49950
           transcript variant AT1G49950.1 mRNA, complete cds
          Length = 1290

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  gaggcagcagaagcccaagcaga 81
           ||||||||||||||| |||||||
Sbjct: 919 gaggcagcagaagccgaagcaga 941
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>ref|NM_202269.1| Arabidopsis thaliana DNA binding AT1G49950 transcript variant
            AT1G49950.3 mRNA, complete cds
          Length = 1481

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 59   gaggcagcagaagcccaagcaga 81
            ||||||||||||||| |||||||
Sbjct: 1105 gaggcagcagaagccgaagcaga 1127
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>ref|NM_179458.1| Arabidopsis thaliana DNA binding / transcription factor AT1G49950
           transcript variant AT1G49950.2 mRNA, complete cds
          Length = 1383

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  gaggcagcagaagcccaagcaga 81
           ||||||||||||||| |||||||
Sbjct: 946 gaggcagcagaagccgaagcaga 968
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>ref|NM_100272.1| Arabidopsis thaliana unknown protein AT1G03910 mRNA, complete cds
          Length = 2019

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 54   ctgatgaggcagcagaagc 72
            |||||||||||||||||||
Sbjct: 1355 ctgatgaggcagcagaagc 1373
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>gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, complete sequence
          Length = 206043

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    agaggatgagtttactcca 97
             |||||||||||||||||||
Sbjct: 53387 agaggatgagtttactcca 53405
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>gb|AY519539.1| Arabidopsis thaliana MYB transcription factor (At1g49950) mRNA,
           complete cds
          Length = 903

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  gaggcagcagaagcccaagcaga 81
           ||||||||||||||| |||||||
Sbjct: 802 gaggcagcagaagccgaagcaga 824
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>gb|AC126944.3| Mus musculus BAC clone RP23-19A4 from chromosome 19, complete sequence
          Length = 184164

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 181    cctgaagaggaagaaagcc 199
              |||||||||||||||||||
Sbjct: 155169 cctgaagaggaagaaagcc 155151
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>gb|AC132319.3| Mus musculus BAC clone RP24-258I12 from chromosome 19, complete
             sequence
          Length = 193053

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 181   cctgaagaggaagaaagcc 199
             |||||||||||||||||||
Sbjct: 33561 cctgaagaggaagaaagcc 33543
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 147     tcaccaagaccaaggccccgctg 169
               ||||||| |||||||||||||||
Sbjct: 2520200 tcaccaaaaccaaggccccgctg 2520222
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>gb|BT009677.1| Arabidopsis thaliana At1g49950 mRNA, complete cds
          Length = 903

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  gaggcagcagaagcccaagcaga 81
           ||||||||||||||| |||||||
Sbjct: 802 gaggcagcagaagccgaagcaga 824
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>gb|AY152831.1| Felis catus clone PAC 6B1 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 60089

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    actccaaccacattgaaca 110
             |||||||||||||||||||
Sbjct: 21063 actccaaccacattgaaca 21045
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>emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in linkage group 18,
             complete sequence
          Length = 169672

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    agcccaagcagaggatgag 88
             |||||||||||||||||||
Sbjct: 19384 agcccaagcagaggatgag 19402
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>gb|U83624.1|ATU83624 Arabidopsis thaliana telomere repeat binding factor 1 (TRB1) mRNA,
           complete cds
          Length = 1403

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  gaggcagcagaagcccaagcaga 81
           ||||||||||||||| |||||||
Sbjct: 946 gaggcagcagaagccgaagcaga 968
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>gb|U83623.1|ATU83623 Arabidopsis thaliana telomere repeat binding factor (TRB1) gene,
            complete cds
          Length = 5641

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 59   gaggcagcagaagcccaagcaga 81
            ||||||||||||||| |||||||
Sbjct: 4060 gaggcagcagaagccgaagcaga 4082
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>gb|AC091899.2| Homo sapiens chromosome 5 clone RP11-158D20, complete sequence
          Length = 139253

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     gaagaaaactgagccagct 19
             |||||||||||||||||||
Sbjct: 31233 gaagaaaactgagccagct 31215
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>gb|AY062736.1| Arabidopsis thaliana Unknown protein (At1g49950; F2J10.16) mRNA,
           complete cds
          Length = 1238

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  gaggcagcagaagcccaagcaga 81
           ||||||||||||||| |||||||
Sbjct: 941 gaggcagcagaagccgaagcaga 963
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>gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, complete sequence
          Length = 151019

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     gaagaaaactgagccagct 19
             |||||||||||||||||||
Sbjct: 18183 gaagaaaactgagccagct 18201
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>emb|BX814217.1|CNS0ADFP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB61ZD04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1381

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 59   gaggcagcagaagcccaagcaga 81
            ||||||||||||||| |||||||
Sbjct: 1062 gaggcagcagaagccgaagcaga 1084
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>emb|BX841926.1|CNS09Y2V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL46ZF03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1004

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 63  cagcagaagcccaagcaga 81
           |||||||||||||||||||
Sbjct: 277 cagcagaagcccaagcaga 259
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>dbj|AB206986.1| Bombyx mori ago2 mRNA for argonaute 2, complete cds
          Length = 4864

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 147 tcaccaagaccaaggcccc 165
           |||||||||||||||||||
Sbjct: 525 tcaccaagaccaaggcccc 507
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>gb|AC112696.4| Homo sapiens BAC clone RP11-444N22 from 2, complete sequence
          Length = 29545

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 53    tctgatgaggcagcagaagccca 75
             |||||||||||||||||| ||||
Sbjct: 25310 tctgatgaggcagcagaaaccca 25332
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 51      agtctgatgaggcagcaga 69
               |||||||||||||||||||
Sbjct: 7910905 agtctgatgaggcagcaga 7910923
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>gb|AY087994.1| Arabidopsis thaliana clone 40229 mRNA, complete sequence
          Length = 1274

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  gaggcagcagaagcccaagcaga 81
           ||||||||||||||| |||||||
Sbjct: 919 gaggcagcagaagccgaagcaga 941
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>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 91720

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 59    gaggcagcagaagcccaagcaga 81
             ||||||||||||||| |||||||
Sbjct: 81432 gaggcagcagaagccgaagcaga 81454
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 173     aaggcgatcctgaagagga 191
               |||||||||||||||||||
Sbjct: 1820914 aaggcgatcctgaagagga 1820932
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>gb|AY104122.1| Zea mays PCO092329 mRNA sequence
          Length = 1616

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 182 ctgaagaggaagaaagccc 200
           |||||||||||||||||||
Sbjct: 525 ctgaagaggaagaaagccc 543
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    ctgatgaggcagcagaagc 72
             |||||||||||||||||||
Sbjct: 16427 ctgatgaggcagcagaagc 16445
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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
              sequence
          Length = 151493

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 62     gcagcagaagcccaagcag 80
              |||||||||||||||||||
Sbjct: 104470 gcagcagaagcccaagcag 104488
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>gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete
             sequence
          Length = 119914

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    ctgatgaggcagcagaagc 72
             |||||||||||||||||||
Sbjct: 57569 ctgatgaggcagcagaagc 57551


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,706,667
Number of Sequences: 3902068
Number of extensions: 1706667
Number of successful extensions: 123853
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123613
Number of HSP's gapped (non-prelim): 240
length of query: 200
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 178
effective length of database: 17,147,199,772
effective search space: 3052201559416
effective search space used: 3052201559416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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