ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4f21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055L05, full insert sequence Length = 1138 Score = 404 bits (204), Expect = e-109 Identities = 367/423 (86%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 gaggacacgggcgcccaggtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 194 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||||||||||||| ||||||||||||||||||||||| ||| |||| || ||| Sbjct: 195 ggcgaggaggacgaggacgtgctcctcgacatgaaggcgaagctttaccggtttgacaag 254 Query: 121 gacgggaaccagtggaaggagaggggcacaggcaccgttaagctgctcannnncaaggag 180 | |||||||||||||||||| |||| || |||||||| ||||| |||| ||||||| Sbjct: 255 taggggaaccagtggaaggagcgggggacgggcaccgtcaagctcctcaagcacaaggag 314 Query: 181 aacggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaaccac 240 ||||||||||||||||| || |||||||||| ||||||||| ||||||||||| |||||| Sbjct: 315 aacggcaaggtccgcctcgtcatgcgccaggccaagacgctcaagatctgcgcgaaccac 374 Query: 241 ttagtgatctcgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctgg 300 |||| |||||||||||||||||||| ||||| ||||| ||||| || ||||||||| Sbjct: 375 ctagttgcttcgaccacgaagatgcaggagcatgcgggcagtgacaagtcgtgcgtctgg 434 Query: 301 cacgcggcagactttgctgacggagagctcaaggatgagatgtttgccattcggtttggc 360 |||||||| ||||| || ||||| ||||| ||||| |||||||| || || ||||||||| Sbjct: 435 cacgcggcggacttcgccgacggcgagcttaaggaggagatgttcgcaatccggtttggc 494 Query: 361 actgtagagaattgcaagaagtttaaggacttggttgatgagattgctgagtcgcttgca 420 |||| || ||||||||||| |||||||| |||||||| |||||| | || || |||||| Sbjct: 495 tctgtcgaaaattgcaagaaatttaaggatttggttgaagagatttcggaatcacttgca 554 Query: 421 aag 423 ||| Sbjct: 555 aag 557
>gb|AY104612.1| Zea mays PCO113007 mRNA sequence Length = 1164 Score = 287 bits (145), Expect = 2e-74 Identities = 354/424 (83%), Gaps = 1/424 (0%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 |||||||| || ||||| || || |||||||||||||| |||||||| |||||||||||| Sbjct: 284 gaggacacgggcgcccaggtggctcccatcgtgcggcttgaggaggtagccgtcaccacc 343 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctat-acaggttcgataa 119 || ||||||||||||||| || |||||||||||||||||||| | || | ||||| || Sbjct: 344 ggcgaggaggacgaggacgtcctgctcgacatgaaggcgaagctgttaccgattcgacaa 403 Query: 120 ggacgggaaccagtggaaggagaggggcacaggcaccgttaagctgctcannnncaagga 179 ||||| ||||| |||||||| ||||||| ||| | || ||||| |||| |||| | Sbjct: 404 agacggtaaccaatggaaggaacggggcacgggcgctgtcaagcttctcaagcacaagca 463 Query: 180 gaacggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaacca 239 || ||||||||||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 464 gaccggcaaggtccgcctagtcatgcgccaggctaaaacgcttaagatctgcgcgaacca 523 Query: 240 cttagtgatctcgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctg 299 | | ||| ||| ||||||||||||||||| ||||| ||||||||||| || || || || Sbjct: 524 cctcgtggcctccaccacgaagatgcaggagcatgcgggcagcgacaagtcgtgtgtttg 583 Query: 300 gcacgcggcagactttgctgacggagagctcaaggatgagatgtttgccattcggtttgg 359 |||||| || |||||||| || || || || ||||| |||||||||||||| ||||||| Sbjct: 584 gcacgctgctgactttgccgatggcgaacttaaggaggagatgtttgccatcaggtttgg 643 Query: 360 cactgtagagaattgcaagaagtttaaggacttggttgatgagattgctgagtcgcttgc 419 | ||||| || ||||||||||| ||||| |||||||| ||||| |||||||||||| | Sbjct: 644 ttcggtagaaaactgcaagaagttcaaggagttggttgaggagatagctgagtcgcttac 703 Query: 420 aaag 423 |||| Sbjct: 704 aaag 707
>dbj|AK069970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039I06, full insert sequence Length = 1111 Score = 285 bits (144), Expect = 7e-74 Identities = 343/411 (83%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 152 gaggacaccggcgcccaggtcgcgcccatcgtcaagctcgaggaggtcgccgtcaccacc 211 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || |||||||||||||| ||||||||||||||| ||||||| ||| | ||||| ||| Sbjct: 212 ggcgaggaggacgaggaggtcctcctcgacatgaagtcgaagctgtaccgcttcgacaag 271 Query: 121 gacgggaaccagtggaaggagaggggcacaggcaccgttaagctgctcannnncaaggag 180 || |||||||| ||||||||||| ||||| ||||| || |||||||| | ||||||| Sbjct: 272 gaggggaaccaatggaaggagagaggcaccggcacggtgaagctgctgaagcacaaggag 331 Query: 181 aacggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaaccac 240 | |||||||||||| || || |||||||||| |||||||| |||||||||||||| ||| Sbjct: 332 accggcaaggtccgtctcgtcatgcgccaggctaagacgctcaagatctgcgccaatcac 391 Query: 241 ttagtgatctcgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctgg 300 | ||| ||||||||||||||||||| || |||||||||||||| || ||||| ||| Sbjct: 392 ctcgtggcgacgaccacgaagatgcaggagcacgccggcagcgacaagtcgtgcgtgtgg 451 Query: 301 cacgcggcagactttgctgacggagagctcaaggatgagatgtttgccattcggtttggc 360 |||||| ||||| || ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct: 452 cacgcgctggacttcgccgacggcgagctcaaggaggaaatgttcgccatacgctttgga 511 Query: 361 actgtagagaattgcaagaagtttaaggacttggttgatgagattgctgag 411 | || ||||| ||||||||||| | ||| |||| || |||||||||||| Sbjct: 512 tccgtcgagaactgcaagaagttcagggagatggtagaagagattgctgag 562
>gb|AY109027.1| Zea mays PCO124171 mRNA sequence Length = 1125 Score = 283 bits (143), Expect = 3e-73 Identities = 327/390 (83%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| ||||| ||||| ||||||||| ||| |||||||||||||| |||||| Sbjct: 272 gaggacaccggcgcccaggtcgcgcccatcgtgaagctggaggaggtcgccgttaccacc 331 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||||||||||||| | ||||||||||||||||||||||| ||| ||||||| ||| Sbjct: 332 ggagaggaggacgaggacgcgctcctcgacatgaaggcgaagctctaccggttcgacaag 391 Query: 121 gacgggaaccagtggaaggagaggggcacaggcaccgttaagctgctcannnncaaggag 180 || ||||| |||||||| ||| | ||||||||||| || |||||||||| ||| || Sbjct: 392 gaggggaatcagtggaaagagcgcggcacaggcactgtgaagctgctcaagcacaaagac 451 Query: 181 aacggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaaccac 240 | || |||||||||||| || ||||| |||| |||||||||||||||||||||||||| Sbjct: 452 accgccaaggtccgcctcgtcatgcgtcaggcgaagacgcttaagatctgcgccaaccat 511 Query: 241 ttagtgatctcgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctgg 300 | ||| | |||| || ||||||||||| || || || |||||||| || ||||| ||| Sbjct: 512 ctcgtggtggcgacgactaagatgcaggagcacgcggggagcgacaagtcgtgcgtgtgg 571 Query: 301 cacgcggcagactttgctgacggagagctcaaggatgagatgtttgccattcggtttggc 360 |||||| ||||| || ||||| |||||||| || ||||||||||| || || ||||| Sbjct: 572 cacgcgctggacttcgccgacggcgagctcaaagaggagatgtttgctatccgttttgga 631 Query: 361 actgtagagaattgcaagaagtttaaggac 390 |||| ||||||||||||||||| |||||| Sbjct: 632 tctgtcgagaattgcaagaagttcaaggac 661
>gb|BT017282.1| Zea mays clone EL01N0314E02.c mRNA sequence Length = 1063 Score = 244 bits (123), Expect = 2e-61 Identities = 322/390 (82%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| ||||||||| ||| |||||||||||||| |||||| Sbjct: 210 gaggacaccggcgctcaggtcgcgcccatcgtgaagctggaggaggtcgccgttaccacc 269 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||||||||||||| || ||||||||||||||||||| ||| ||||||| ||| Sbjct: 270 ggagaggaggacgaggacgtacttgtcgacatgaaggcgaagctctaccggttcgacaag 329 Query: 121 gacgggaaccagtggaaggagaggggcacaggcaccgttaagctgctcannnncaaggag 180 || | |||||||||||| || | ||||||||||| || |||||||| | ||||||| Sbjct: 330 gaggcgaaccagtggaaagaacgtggcacaggcactgtgaagctgcttaagcacaaggag 389 Query: 181 aacggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaaccac 240 | || |||||||||||| || ||||| |||| ||||||||||||||||| || ||||| Sbjct: 390 accgccaaggtccgcctcgtcatgcgtcaggcgaagacgcttaagatctgtgctaaccat 449 Query: 241 ttagtgatctcgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctgg 300 | ||| | |||| || ||||||||||| || || || |||||||| || ||||| ||| Sbjct: 450 cttgtggtggcgacgactaagatgcaggagcacgcagggagcgacaagtcgtgcgtgtgg 509 Query: 301 cacgcggcagactttgctgacggagagctcaaggatgagatgtttgccattcggtttggc 360 |||||| ||||| || ||||| ||||||||||| ||||||||||| || || ||||| Sbjct: 510 cacgcgctggacttcgccgacggtgagctcaaggaggagatgtttgctatccgttttgga 569 Query: 361 actgtagagaattgcaagaagtttaaggac 390 |||| ||||||||||||||||| |||||| Sbjct: 570 tctgtcgagaattgcaagaagttcaaggac 599
>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17, complete sequence Length = 141598 Score = 153 bits (77), Expect = 7e-34 Identities = 129/148 (87%) Strand = Plus / Plus Query: 93 gaaggcgaagctatacaggttcgataaggacgggaaccagtggaaggagaggggcacagg 152 |||||||||||| ||| |||| || ||||| |||||||||||||||||| |||| || || Sbjct: 65042 gaaggcgaagctttaccggtttgacaaggaggggaaccagtggaaggagcgggggacggg 65101 Query: 153 caccgttaagctgctcannnncaaggagaacggcaaggtccgccttgttatgcgccaggn 212 |||||| ||||| |||| |||||||||||||||||||||||| || |||||||||| Sbjct: 65102 caccgtcaagctcctcaagcacaaggagaacggcaaggtccgcctcgtcatgcgccaggc 65161 Query: 213 caagacgcttaagatctgcgccaaccac 240 ||||||||| ||||||||||| |||||| Sbjct: 65162 caagacgctcaagatctgcgcgaaccac 65189 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 64836 gaggacacgggcgcccaggtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 64895 Query: 61 ggtgaggaggacgaggactctctcctcgacatg 93 || ||||||||||||||| |||||||||||| Sbjct: 64896 ggcgaggaggacgaggacgtgctcctcgacatg 64928 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 250 tcgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctggcacgcggca 309 |||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| Sbjct: 65386 tcgaccacgaagatgcaggagcatgcgggcagtgacaagtcgtgcgtctggcacgcggcg 65445 Query: 310 gactttgctgacggagagctcaaggatgagatgtttgccattcggtttggcactgt 365 ||||| || ||||| ||||| ||||| |||||||| || || ||||||||| |||| Sbjct: 65446 gacttcgccgacggcgagcttaaggaggagatgttcgcaatccggtttggctctgt 65501
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 153 bits (77), Expect = 7e-34 Identities = 129/148 (87%) Strand = Plus / Plus Query: 93 gaaggcgaagctatacaggttcgataaggacgggaaccagtggaaggagaggggcacagg 152 |||||||||||| ||| |||| || ||||| |||||||||||||||||| |||| || || Sbjct: 16424605 gaaggcgaagctttaccggtttgacaaggaggggaaccagtggaaggagcgggggacggg 16424664 Query: 153 caccgttaagctgctcannnncaaggagaacggcaaggtccgccttgttatgcgccaggn 212 |||||| ||||| |||| |||||||||||||||||||||||| || |||||||||| Sbjct: 16424665 caccgtcaagctcctcaagcacaaggagaacggcaaggtccgcctcgtcatgcgccaggc 16424724 Query: 213 caagacgcttaagatctgcgccaaccac 240 ||||||||| ||||||||||| |||||| Sbjct: 16424725 caagacgctcaagatctgcgcgaaccac 16424752 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 16424399 gaggacacgggcgcccaggtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 16424458 Query: 61 ggtgaggaggacgaggactctctcctcgacatg 93 || ||||||||||||||| |||||||||||| Sbjct: 16424459 ggcgaggaggacgaggacgtgctcctcgacatg 16424491 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 250 tcgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctggcacgcggca 309 |||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| Sbjct: 16424949 tcgaccacgaagatgcaggagcatgcgggcagtgacaagtcgtgcgtctggcacgcggcg 16425008 Query: 310 gactttgctgacggagagctcaaggatgagatgtttgccattcggtttggcactgt 365 ||||| || ||||| ||||| ||||| |||||||| || || ||||||||| |||| Sbjct: 16425009 gacttcgccgacggcgagcttaaggaggagatgttcgcaatccggtttggctctgt 16425064
>gb|BT024064.1| Zea mays clone EL01N0446C11 mRNA sequence Length = 1671 Score = 133 bits (67), Expect = 6e-28 Identities = 145/171 (84%) Strand = Plus / Plus Query: 253 accacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctggcacgcggcagac 312 ||||||||||||||||| ||||| ||||||||||| || || || |||||||| || ||| Sbjct: 18 accacgaagatgcaggagcatgcgggcagcgacaagtcgtgtgtttggcacgctgctgac 77 Query: 313 tttgctgacggagagctcaaggatgagatgtttgccattcggtttggcactgtagagaat 372 ||||| || || || || ||||| |||||||||||||| ||||||| | ||||| || Sbjct: 78 tttgccgatggcgaacttaaggaggagatgtttgccatcaggtttggttcggtagaaaac 137 Query: 373 tgcaagaagtttaaggacttggttgatgagattgctgagtcgcttgcaaag 423 ||||||||||| ||||| |||||||| ||||| |||||||||||| ||||| Sbjct: 138 tgcaagaagttcaaggagttggttgaggagatagctgagtcgcttacaaag 188
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 6e-22 Identities = 121/144 (84%) Strand = Plus / Minus Query: 93 gaaggcgaagctatacaggttcgataaggacgggaaccagtggaaggagaggggcacagg 152 |||| ||||||| ||| | ||||| ||||| |||||||| ||||||||||| ||||| || Sbjct: 10161892 gaagtcgaagctgtaccgcttcgacaaggaggggaaccaatggaaggagagaggcaccgg 10161833 Query: 153 caccgttaagctgctcannnncaaggagaacggcaaggtccgccttgttatgcgccaggn 212 ||| || |||||||| | |||||||| |||||||||||| || || |||||||||| Sbjct: 10161832 cacggtgaagctgctgaagcacaaggagaccggcaaggtccgtctcgtcatgcgccaggc 10161773 Query: 213 caagacgcttaagatctgcgccaa 236 |||||||| |||||||||||||| Sbjct: 10161772 taagacgctcaagatctgcgccaa 10161749 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 10162079 gaggacaccggcgcccaggtcgcgcccatcgtcaagctcgaggaggtcgccgtcaccacc 10162020 Query: 61 ggtgaggaggacgagga 77 || |||||||||||||| Sbjct: 10162019 ggcgaggaggacgagga 10162003 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 251 cgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctggcacgcggcag 310 ||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| | Sbjct: 10161639 cgaccacgaagatgcaggagcacgccggcagcgacaagtcgtgcgtgtggcacgcgctgg 10161580 Query: 311 actttgctgacggagagctcaaggatgagatgtttgccattcggtttgg 359 |||| || ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct: 10161579 acttcgccgacggcgagctcaaggaggaaatgttcgccatacgctttgg 10161531
>gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078C05, complete sequence Length = 122116 Score = 113 bits (57), Expect = 6e-22 Identities = 121/144 (84%) Strand = Plus / Minus Query: 93 gaaggcgaagctatacaggttcgataaggacgggaaccagtggaaggagaggggcacagg 152 |||| ||||||| ||| | ||||| ||||| |||||||| ||||||||||| ||||| || Sbjct: 107493 gaagtcgaagctgtaccgcttcgacaaggaggggaaccaatggaaggagagaggcaccgg 107434 Query: 153 caccgttaagctgctcannnncaaggagaacggcaaggtccgccttgttatgcgccaggn 212 ||| || |||||||| | |||||||| |||||||||||| || || |||||||||| Sbjct: 107433 cacggtgaagctgctgaagcacaaggagaccggcaaggtccgtctcgtcatgcgccaggc 107374 Query: 213 caagacgcttaagatctgcgccaa 236 |||||||| |||||||||||||| Sbjct: 107373 taagacgctcaagatctgcgccaa 107350 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 107680 gaggacaccggcgcccaggtcgcgcccatcgtcaagctcgaggaggtcgccgtcaccacc 107621 Query: 61 ggtgaggaggacgagga 77 || |||||||||||||| Sbjct: 107620 ggcgaggaggacgagga 107604 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 251 cgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctggcacgcggcag 310 ||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| | Sbjct: 107240 cgaccacgaagatgcaggagcacgccggcagcgacaagtcgtgcgtgtggcacgcgctgg 107181 Query: 311 actttgctgacggagagctcaaggatgagatgtttgccattcggtttgg 359 |||| || ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct: 107180 acttcgccgacggcgagctcaaggaggaaatgttcgccatacgctttgg 107132
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 113 bits (57), Expect = 6e-22 Identities = 121/144 (84%) Strand = Plus / Minus Query: 93 gaaggcgaagctatacaggttcgataaggacgggaaccagtggaaggagaggggcacagg 152 |||| ||||||| ||| | ||||| ||||| |||||||| ||||||||||| ||||| || Sbjct: 23305 gaagtcgaagctgtaccgcttcgacaaggaggggaaccaatggaaggagagaggcaccgg 23246 Query: 153 caccgttaagctgctcannnncaaggagaacggcaaggtccgccttgttatgcgccaggn 212 ||| || |||||||| | |||||||| |||||||||||| || || |||||||||| Sbjct: 23245 cacggtgaagctgctgaagcacaaggagaccggcaaggtccgtctcgtcatgcgccaggc 23186 Query: 213 caagacgcttaagatctgcgccaa 236 |||||||| |||||||||||||| Sbjct: 23185 taagacgctcaagatctgcgccaa 23162 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 23492 gaggacaccggcgcccaggtcgcgcccatcgtcaagctcgaggaggtcgccgtcaccacc 23433 Query: 61 ggtgaggaggacgagga 77 || |||||||||||||| Sbjct: 23432 ggcgaggaggacgagga 23416 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 251 cgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctggcacgcggcag 310 ||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| | Sbjct: 23052 cgaccacgaagatgcaggagcacgccggcagcgacaagtcgtgcgtgtggcacgcgctgg 22993 Query: 311 actttgctgacggagagctcaaggatgagatgtttgccattcggtttgg 359 |||| || ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct: 22992 acttcgccgacggcgagctcaaggaggaaatgttcgccatacgctttgg 22944
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 6e-22 Identities = 121/144 (84%) Strand = Plus / Minus Query: 93 gaaggcgaagctatacaggttcgataaggacgggaaccagtggaaggagaggggcacagg 152 |||| ||||||| ||| | ||||| ||||| |||||||| ||||||||||| ||||| || Sbjct: 10159993 gaagtcgaagctgtaccgcttcgacaaggaggggaaccaatggaaggagagaggcaccgg 10159934 Query: 153 caccgttaagctgctcannnncaaggagaacggcaaggtccgccttgttatgcgccaggn 212 ||| || |||||||| | |||||||| |||||||||||| || || |||||||||| Sbjct: 10159933 cacggtgaagctgctgaagcacaaggagaccggcaaggtccgtctcgtcatgcgccaggc 10159874 Query: 213 caagacgcttaagatctgcgccaa 236 |||||||| |||||||||||||| Sbjct: 10159873 taagacgctcaagatctgcgccaa 10159850 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 10160180 gaggacaccggcgcccaggtcgcgcccatcgtcaagctcgaggaggtcgccgtcaccacc 10160121 Query: 61 ggtgaggaggacgagga 77 || |||||||||||||| Sbjct: 10160120 ggcgaggaggacgagga 10160104 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 251 cgaccacgaagatgcaggaacatgccggcagcgacaaatcctgcgtctggcacgcggcag 310 ||||||||||||||||||| || |||||||||||||| || ||||| ||||||||| | Sbjct: 10159740 cgaccacgaagatgcaggagcacgccggcagcgacaagtcgtgcgtgtggcacgcgctgg 10159681 Query: 311 actttgctgacggagagctcaaggatgagatgtttgccattcggtttgg 359 |||| || ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct: 10159680 acttcgccgacggcgagctcaaggaggaaatgttcgccatacgctttgg 10159632
>gb|DQ296188.1| Brassica rapa clone 25 unknown mRNA Length = 1161 Score = 85.7 bits (43), Expect = 1e-13 Identities = 118/143 (82%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 151 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 210 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 |||||||| ||||| ||| | ||||||| |||| ||||||| || ||||||||||| Sbjct: 211 ggtgaggaagacgaagacgccgtcctcgatctgaaatcgaagctgtatcggttcgataag 270 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 271 gaagcgaatcagtggaaggagag 293
>gb|AY020112.1| Oryza sativa microsatellite MRG2437 containing (CT)X18, genomic sequence Length = 236 Score = 73.8 bits (37), Expect = 5e-10 Identities = 51/56 (91%) Strand = Plus / Plus Query: 185 gcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaaccac 240 ||||||||||||| || |||||||||| ||||||||| ||||||||||| |||||| Sbjct: 1 gcaaggtccgcctcgtcatgcgccaggccaagacgctcaagatctgcgcgaaccac 56
>dbj|AK059176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F06, full insert sequence Length = 655 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 352 cggtttggcactgtagagaattgcaagaagtttaaggacttggttgatgagattgctgag 411 ||||||||| |||| || ||||||||||| |||||||| |||||||| |||||| | || Sbjct: 9 cggtttggctctgtcgaaaattgcaagaaatttaaggatttggttgaagagatttcggaa 68 Query: 412 tcgcttgcaaag 423 || ||||||||| Sbjct: 69 tcacttgcaaag 80
>gb|AC155338.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH138P04, complete sequence Length = 137697 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 39707 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 39648 Query: 61 ggtgaggaggacga 74 |||||||| ||||| Sbjct: 39647 ggtgaggaagacga 39634 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Minus Query: 110 ggttcgataaggacgggaaccagtggaaggagag 143 ||||||||||||| | ||| |||||||||||||| Sbjct: 39496 ggttcgataaggaagcgaatcagtggaaggagag 39463
>ref|NM_100588.2| Arabidopsis thaliana SIRANBP; Ran GTPase binding AT1G07140 (SIRANBP) mRNA, complete cds Length = 1416 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 156 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 215 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||| ||||| || | |||| || |||| ||||||| || | ||||||||| Sbjct: 216 ggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataag 275 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 276 gatgcgaatcagtggaaggagag 298
>emb|X97377.1|ATRRBP1A A.thaliana mRNA for AtRanBP1a protein Length = 1239 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 124 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 183 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||| ||||| || | |||| || |||| ||||||| || | ||||||||| Sbjct: 184 ggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataag 243 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 244 gatgcgaatcagtggaaggagag 266
>gb|AY097364.1| Arabidopsis thaliana At1g07140/F10K1_27 mRNA, complete cds Length = 687 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 64 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 123 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||| ||||| || | |||| || |||| ||||||| || | ||||||||| Sbjct: 124 ggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataag 183 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 184 gatgcgaatcagtggaaggagag 206
>gb|AF410294.1|AF410294 Arabidopsis thaliana At1g07140/F10K1_27 mRNA, complete cds Length = 1105 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 156 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 215 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||| ||||| || | |||| || |||| ||||||| || | ||||||||| Sbjct: 216 ggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataag 275 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 276 gatgcgaatcagtggaaggagag 298
>gb|AF370491.1|AF370491 Arabidopsis thaliana Unknown protein (F10K1.15) mRNA, complete cds Length = 1186 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 154 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 213 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||| ||||| || | |||| || |||| ||||||| || | ||||||||| Sbjct: 214 ggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataag 273 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 274 gatgcgaatcagtggaaggagag 296
>gb|BT002193.1| Arabidopsis thaliana Unknown protein (At1g07150) mRNA, complete cds Length = 867 Score = 54.0 bits (27), Expect = 5e-04 Identities = 114/143 (79%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 64 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 123 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || ||||| ||||| || | |||| || |||| ||||||| || | ||||||||| Sbjct: 124 ggcgaggaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataag 183 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 184 gatgcgaatcagtggaaggagag 206
>gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111464 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 47935 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 47994 Query: 61 ggtgaggaggacga 74 || ||||| ||||| Sbjct: 47995 ggcgaggaagacga 48008 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 ttcgataaggacgggaaccagtggaaggagag 143 ||||||||||| | ||| |||||||||||||| Sbjct: 48166 ttcgataaggatgcgaatcagtggaaggagag 48197
>gb|BC102327.1| Bos taurus similar to Ran-specific GTPase-activating protein (Ran binding protein 1) (RANBP1) (HpaII tiny fragments locus 9a protein), mRNA (cDNA clone MGC:127635 IMAGE:7951108), complete cds Length = 882 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 213 caagacgcttaagatctgcgccaaccact 241 |||||| |||||||||||||||||||||| Sbjct: 383 caagacccttaagatctgcgccaaccact 411
>ref|NM_001034586.1| Bos taurus similar to Ran-specific GTPase-activating protein (Ran binding protein 1) (RANBP1) (HpaII tiny fragments locus 9a protein) (MGC127635), mRNA Length = 882 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 213 caagacgcttaagatctgcgccaaccact 241 |||||| |||||||||||||||||||||| Sbjct: 383 caagacccttaagatctgcgccaaccact 411
>gb|BT020473.1| Arabidopsis thaliana At2g30060 gene, complete cds Length = 685 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 77 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 136 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 137 gaagaagacga 147
>ref|NM_128561.3| Arabidopsis thaliana Ran GTPase binding AT2G30060 mRNA, complete cds Length = 1098 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 149 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 208 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 209 gaagaagacga 219
>gb|BT020304.1| Arabidopsis thaliana At2g30060 gene, complete cds Length = 669 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 88 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 147 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 148 gaagaagacga 158
>emb|X97378.1|ATRRBP1B A.thaliana mRNA for AtRanBP1b protein Length = 1075 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 108 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 167 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 168 gaagaagacga 178
>gb|AY093099.1| Arabidopsis thaliana Ran binding protein (At2g30060) mRNA, complete cds Length = 1068 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 128 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 187 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 188 gaagaagacga 198
>gb|AC004680.3| Arabidopsis thaliana chromosome 2 clone F23F1 map m283, complete sequence Length = 88543 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 14081 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 14022 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 14021 gaagaagacga 14011
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 78533 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 78474 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 78473 gaagaagacga 78463
>gb|BT024607.1| Arabidopsis thaliana At2g30060 mRNA, complete cds Length = 654 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 73 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 132 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 133 gaagaagacga 143
>emb|BX820998.1|CNS0AA79 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 983 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Plus Query: 4 gacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccaccggt 63 ||||||||||| || || || || ||||| |||| || || |||||||||||||||||| Sbjct: 60 gacaccggtgctcaggttgctcctatcgtcaggcttgaagaagtcgccgtcaccaccggt 119 Query: 64 gaggaggacga 74 || || ||||| Sbjct: 120 gaagaagacga 130
>gb|AF057024.1|AF057024 Arabidopsis thaliana Ran-binding protein (siRanBP) mRNA, complete cds Length = 1032 Score = 46.1 bits (23), Expect = 0.11 Identities = 113/143 (79%) Strand = Plus / Plus Query: 1 gaggacaccggtgcccaagtcgcccccatcgtgcggctcgaggaggtcgccgtcaccacc 60 ||||||||||| || || ||||| || ||||| |||| |||||||| |||||||| ||| Sbjct: 102 gaggacaccggagctcaggtcgctccgatcgttaggcttgaggaggttgccgtcactacc 161 Query: 61 ggtgaggaggacgaggactctctcctcgacatgaaggcgaagctatacaggttcgataag 120 || || || ||||| || | |||| || |||| ||||||| || | ||||||||| Sbjct: 162 ggcgaagaagacgaagatgccgtccttgatctgaaatcgaagctttatcgattcgataag 221 Query: 121 gacgggaaccagtggaaggagag 143 || | ||| |||||||||||||| Sbjct: 222 gatgcgaatcagtggaaggagag 244
>ref|XM_965890.1| PREDICTED: Tribolium castaneum similar to Ran-specific GTPase-activating protein (Ran binding protein 1) (RanBP1) (LOC659598), mRNA Length = 504 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 agtggaaggagaggggcacagg 152 |||||||||||||||||||||| Sbjct: 254 agtggaaggagaggggcacagg 275
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 175 aaggagaacggcaaggtccgcc 196 |||||||||||||||||||||| Sbjct: 4895177 aaggagaacggcaaggtccgcc 4895156
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 1.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 184 ggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaacca 239 ||||| ||||| ||||||||||| | || ||||| || ||| ||||||||||||| Sbjct: 156754 ggcaaagtccgacttgttatgcgtcgggataagactctgaaggtctgcgccaacca 156809
>gb|AC123662.13| Mus musculus chromosome 5, clone RP23-213N8, complete sequence Length = 223267 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 ggaaggagaggggcacaggca 154 ||||||||||||||||||||| Sbjct: 147770 ggaaggagaggggcacaggca 147790
>ref|XM_384283.1| Gibberella zeae PH-1 chromosome 2 conserved hypothetical protein (FG04107.1) partial mRNA Length = 729 Score = 42.1 bits (21), Expect = 1.7 Identities = 56/68 (82%) Strand = Plus / Plus Query: 174 caaggagaacggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgc 233 |||||||||||||||| ||| || || ||||| | | |||||| || ||| ||||||| Sbjct: 435 caaggagaacggcaagacccgactggtcatgcgacgcgacaagaccctcaaggtctgcgc 494 Query: 234 caaccact 241 |||||||| Sbjct: 495 caaccact 502
>ref|XM_566483.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNA00560) partial mRNA Length = 878 Score = 42.1 bits (21), Expect = 1.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 184 ggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaacca 239 ||||| ||||| ||||||||||| | || ||||| || ||| ||||||||||||| Sbjct: 239 ggcaaagtccgacttgttatgcgtcgggataagactctgaaggtctgcgccaacca 294
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gtcgccgtcaccaccggtgag 66 ||||||||||||||||||||| Sbjct: 12188242 gtcgccgtcaccaccggtgag 12188222
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gtcgccgtcaccaccggtgag 66 ||||||||||||||||||||| Sbjct: 14246703 gtcgccgtcaccaccggtgag 14246723
>dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_E02 Length = 125860 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gtcgccgtcaccaccggtgag 66 ||||||||||||||||||||| Sbjct: 51853 gtcgccgtcaccaccggtgag 51873
>emb|AM042542.1| Sordaria macrospora partial sbp gene for putative GTP binding protein, exons 1-2 Length = 285 Score = 42.1 bits (21), Expect = 1.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 178 gagaacggcaaggtccgccttgttatgcgccaggncaagacgcttaagatctgcgccaac 237 |||||||||||| ||| || || ||||||| | |||||| || ||| ||||||||||| Sbjct: 109 gagaacggcaagacccgtctcgtcatgcgccgcgacaagaccctcaaggtctgcgccaac 168 Query: 238 cact 241 |||| Sbjct: 169 cact 172
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 cgcccccatcgtgcggctcgaggag 45 ||||||||||| ||||||||||||| Sbjct: 2996765 cgcccccatcgagcggctcgaggag 2996789
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gtcgccgtcaccaccggtgag 66 ||||||||||||||||||||| Sbjct: 12142612 gtcgccgtcaccaccggtgag 12142592
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gtcgccgtcaccaccggtgag 66 ||||||||||||||||||||| Sbjct: 109075 gtcgccgtcaccaccggtgag 109095
>ref|NM_125246.2| Arabidopsis thaliana RANBP1 (RAN BINDING PROTEIN 1) AT5G58590 (RANBP1) mRNA, complete cds Length = 979 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 ttcgataaggacgggaaccagtggaaggagag 143 |||||||| || |||||||| ||||||||||| Sbjct: 251 ttcgataaagaagggaaccaatggaaggagag 282
>gb|AC114634.14| Mus musculus chromosome 8, clone RP24-116E2, complete sequence Length = 198670 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccagtggaaggagaggggca 148 |||||||||||||||||||| Sbjct: 146429 ccagtggaaggagaggggca 146410
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 caccaccggtgaggaggacgagga 77 ||||||||||||||||| |||||| Sbjct: 1442565 caccaccggtgaggagggcgagga 1442588
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caccggtgcccaagtcgccc 25 |||||||||||||||||||| Sbjct: 602532 caccggtgcccaagtcgccc 602513
>gb|AY050947.2| Arabidopsis thaliana At5g58590 mRNA sequence Length = 696 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 ttcgataaggacgggaaccagtggaaggagag 143 |||||||| || |||||||| ||||||||||| Sbjct: 251 ttcgataaagaagggaaccaatggaaggagag 282
>emb|AJ000496.1|RNCNG41 Rattus norvegicus mRNA for cyclic nucleotide-gated cation channel beta subunit Length = 4238 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaaccagtggaaggagagg 144 |||||||||||||||||||| Sbjct: 280 ggaaccagtggaaggagagg 299
>gb|BT024924.1| Arabidopsis thaliana At5g58590 mRNA, complete cds Length = 660 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 ttcgataaggacgggaaccagtggaaggagag 143 |||||||| || |||||||| ||||||||||| Sbjct: 172 ttcgataaagaagggaaccaatggaaggagag 203
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 tcaccaccggtgaggaggacgagg 76 ||||||||| |||||||||||||| Sbjct: 479184 tcaccaccgatgaggaggacgagg 479161
>emb|BX897720.7| Zebrafish DNA sequence from clone DKEYP-77C4 in linkage group 14, complete sequence Length = 142637 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 actgtagagaattgcaagaa 380 |||||||||||||||||||| Sbjct: 54259 actgtagagaattgcaagaa 54240
>ref|NM_072551.2| Caenorhabditis elegans F19F10.9 (F19F10.9) mRNA, complete cds Length = 2681 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 aaaggatgaagacggcgaaa 439 |||||||||||||||||||| Sbjct: 1246 aaaggatgaagacggcgaaa 1265
>ref|NM_031809.1| Rattus norvegicus cyclic nucleotide gated channel beta 1 (Cngb1), mRNA Length = 4238 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaaccagtggaaggagagg 144 |||||||||||||||||||| Sbjct: 280 ggaaccagtggaaggagagg 299
>ref|XM_579536.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031809 (LOC497725), mRNA Length = 4231 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaaccagtggaaggagagg 144 |||||||||||||||||||| Sbjct: 262 ggaaccagtggaaggagagg 281
>dbj|AB020755.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1 Length = 81672 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 112 ttcgataaggacgggaaccagtggaaggagag 143 |||||||| || |||||||| ||||||||||| Sbjct: 16012 ttcgataaagaagggaaccaatggaaggagag 15981
>gb|U62742.1|ATU62742 Arabidopsis thaliana Ran binding protein 1 homolog (RanBP1) mRNA, complete cds Length = 962 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 ttcgataaggacgggaaccagtggaaggagag 143 |||||||| || |||||||| ||||||||||| Sbjct: 234 ttcgataaagaagggaaccaatggaaggagag 265
>gb|U36795.1|MXU36795 Myxococcus xanthus rfbABC O-antigen biosynthesis operon, rfbA, rfbB, and rfbC genes, complete cds Length = 7165 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 accaccggtgaggaggacga 74 |||||||||||||||||||| Sbjct: 2889 accaccggtgaggaggacga 2870
>emb|AJ224680.1|RNAJ4680 Rattus norvegicus mRNA for glutamic-acid rich protein, complete CDS Length = 1479 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaaccagtggaaggagagg 144 |||||||||||||||||||| Sbjct: 280 ggaaccagtggaaggagagg 299 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,199,319 Number of Sequences: 3902068 Number of extensions: 3199319 Number of successful extensions: 67740 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67255 Number of HSP's gapped (non-prelim): 477 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
