ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4c23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like) 212 4e-55
2RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18) 137 1e-32
3RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18) 137 2e-32
4RL6_PIG (Q2YGT9) 60S ribosomal protein L6 134 1e-31
5RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6 132 4e-31
6RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6 132 6e-31
7RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enha... 131 1e-30
8RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enha... 130 2e-30
9RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related prot... 129 6e-30
10RL6_CAEEL (P47991) 60S ribosomal protein L6 117 2e-26
11RL6_SCHPO (P79071) 60S ribosomal protein L6 116 4e-26
12RL14E_SULAC (Q4JAJ9) 50S ribosomal protein L14e 47 4e-05
13RL14E_SULSO (Q980C1) 50S ribosomal protein L14e 44 3e-04
14RL14E_SULTO (Q975L7) 50S ribosomal protein L14e 42 0.001
15RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e 42 0.001
16RL14E_METKA (Q8TX43) 50S ribosomal protein L14e 39 0.006
17RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e 39 0.008
18RL6_ENTHI (O15595) 60S ribosomal protein L6 (Fragment) 38 0.014
19RL14E_PYRFU (Q8U2L5) 50S ribosomal protein L14e 35 0.12
20RL14E_PYRHO (P59937) 50S ribosomal protein L14e 33 0.46
21RL14E_PYRAB (Q9UZJ5) 50S ribosomal protein L14e 33 0.46
22RL27_RAT (P61354) 60S ribosomal protein L27 32 0.79
23RL27_MOUSE (P61358) 60S ribosomal protein L27 32 0.79
24RL27_HUMAN (P61353) 60S ribosomal protein L27 32 0.79
25RL27_CHICK (P61355) 60S ribosomal protein L27 32 0.79
26RL27_CERNI (P61357) 60S ribosomal protein L27 32 0.79
27RL27_CANFA (Q9XSU7) 60S ribosomal protein L27 32 0.79
28RL27_BOVIN (P61356) 60S ribosomal protein L27 32 0.79
29RL27_HIPCM (P61359) 60S ribosomal protein L27 32 1.0
30RL27_BRARE (Q7ZV82) 60S ribosomal protein L27 32 1.0
31RL17_ICTPU (Q90YU1) 60S ribosomal protein L27 32 1.0
32RL14E_PYRKO (Q5JJE4) 50S ribosomal protein L14e 31 1.8
33RL27_CAEEL (P91914) 60S ribosomal protein L27 30 3.0
34RL27_PEA (Q05462) 60S ribosomal protein L27 30 3.9
35ELL_MOUSE (O08856) RNA polymerase II elongation factor ELL (Elev... 30 3.9
36CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-... 30 3.9
37YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III 30 5.1
38NAMA_LISMO (Q8Y4H1) NADPH dehydrogenase (EC 1.6.99.1) (Xenobioti... 29 6.7
39GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator ... 29 8.7
40SYT_NITEU (Q82VV1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 29 8.7
41V51K_BPL79 (P24125) 51.5 kDa protein 29 8.7
42RL27_YEAST (P38706) 60S ribosomal protein L27 29 8.7
43RL27A_SCHPO (O14388) 60S ribosomal protein L27-A 29 8.7 
>RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)|
          Length = 234

 Score =  212 bits (540), Expect = 4e-55
 Identities = 109/168 (64%), Positives = 125/168 (74%), Gaps = 5/168 (2%)
 Frame = +2

Query: 20  KMALGIKRASRSHSYHRRGLWAIKAKNGGXXXXXXXXXXXXXXXX-----YPADDVKPRT 184
           ++  GI + SRS  YH+RGLWAIKAKNGG                     YPADDVK   
Sbjct: 16  ELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPL 75

Query: 185 ASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRV 364
            + RKPKPTKLR++ITPGTVLI+LAGR+ GKRVVFLKQL SGLLL+TGPFK+NGVP+RRV
Sbjct: 76  INKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRV 135

Query: 365 NQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKE 508
           NQAYVIATSTKVDISGV VEKFDDKYF +  + + KK EGE FE EK+
Sbjct: 136 NQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKK 183
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>RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)|
          Length = 175

 Score =  137 bits (346), Expect = 1e-32
 Identities = 65/117 (55%), Positives = 88/117 (75%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 334
           YP++DV     + +  +P KLR+++ PGTVLILLAGR+ GKRVV+LK L+   LL+TGPF
Sbjct: 9   YPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPF 68

Query: 335 KINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEK 505
           K+NGVP+RRVN  YVIATSTKV + GV VEKF+ +YFA++K  + +K E  LF  ++
Sbjct: 69  KVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQ 125
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>RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)|
          Length = 175

 Score =  137 bits (344), Expect = 2e-32
 Identities = 65/117 (55%), Positives = 88/117 (75%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPF 334
           YP++DV     + +  +P KLR+++ PGTVLILLAGR+ GKRVV+LK L+   LLI+GPF
Sbjct: 9   YPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPF 68

Query: 335 KINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEK 505
           K+NGVP+RRVN  YVIATSTKV + GV VEKF+ +YFA++K  + +K E  LF  ++
Sbjct: 69  KVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQ 125
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>RL6_PIG (Q2YGT9) 60S ribosomal protein L6|
          Length = 283

 Score =  134 bits (337), Expect = 1e-31
 Identities = 70/124 (56%), Positives = 90/124 (72%), Gaps = 6/124 (4%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 319
           YP +DV PR   +   KP      KLR++ITPGT+LI+L GR+ GKRV+FLKQL SGLLL
Sbjct: 111 YPTEDV-PRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLL 169

Query: 320 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKV-EKFDDKYFARDKKARAKKTEGELFE 496
           +TGP  +N VP+RR +Q +VIATSTK+DISGVK+ E   D YF + K  + +  EGE+F+
Sbjct: 170 VTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFD 229

Query: 497 TEKE 508
           TEKE
Sbjct: 230 TEKE 233
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>RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6|
          Length = 286

 Score =  132 bits (333), Expect = 4e-31
 Identities = 70/124 (56%), Positives = 90/124 (72%), Gaps = 6/124 (4%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 319
           YP +DV PR   +   KP      KLR++ITPGT+LI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 114 YPTEDV-PRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLL 172

Query: 320 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKV-EKFDDKYFARDKKARAKKTEGELFE 496
           +TGP  +N VP+RR +Q +VIATSTK+DISGVK+ E   D YF + K  + +  EGE+F+
Sbjct: 173 VTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFD 232

Query: 497 TEKE 508
           TE+E
Sbjct: 233 TERE 236
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>RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6|
          Length = 287

 Score =  132 bits (332), Expect = 6e-31
 Identities = 71/124 (57%), Positives = 89/124 (71%), Gaps = 6/124 (4%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 319
           YP +DV PR   +   KP      KLR++ITPGTVLI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 115 YPTEDV-PRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLL 173

Query: 320 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 496
           +TGP  +N VP+RR +Q +VIATSTK+DIS VK+ K   D YF + K  + +  EGE+F+
Sbjct: 174 VTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFD 233

Query: 497 TEKE 508
           TEKE
Sbjct: 234 TEKE 237
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>RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
           (Neoplasm-related protein C140)
          Length = 287

 Score =  131 bits (329), Expect = 1e-30
 Identities = 70/124 (56%), Positives = 89/124 (71%), Gaps = 6/124 (4%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 319
           YP +DV PR   +   KP      KLR++ITPGT+LI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 115 YPTEDV-PRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 173

Query: 320 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 496
           +TGP  +N VP+RR +Q +VIATSTK+DIS VK+ K   D YF + K  + +  EGE+F+
Sbjct: 174 VTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFD 233

Query: 497 TEKE 508
           TEKE
Sbjct: 234 TEKE 237
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>RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
          Length = 295

 Score =  130 bits (328), Expect = 2e-30
 Identities = 72/124 (58%), Positives = 89/124 (71%), Gaps = 6/124 (4%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 319
           YP +DV PR   +   KP      +LRS+ITPGTVLI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 123 YPTEDV-PRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLL 181

Query: 320 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 496
           +TGP  IN VP+RR +Q +VIATSTKVDIS VK+ K   D YF + +  + +  EGE+F+
Sbjct: 182 VTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFD 241

Query: 497 TEKE 508
           TEKE
Sbjct: 242 TEKE 245
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>RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related protein C140)|
          Length = 297

 Score =  129 bits (323), Expect = 6e-30
 Identities = 71/124 (57%), Positives = 88/124 (70%), Gaps = 6/124 (4%)
 Frame = +2

Query: 155 YPADDVKPRTASTRKPKP-----TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLL 319
           YP +DV PR   +   KP      +LRS+ITPGTVLI+L GR+ GKRVVFLKQL SGLLL
Sbjct: 125 YPTEDV-PRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLL 183

Query: 320 ITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEK-FDDKYFARDKKARAKKTEGELFE 496
           +TGP  +N VP+RR +Q +VIATSTKVDIS VK+ K   D YF +    + +  EGE+F+
Sbjct: 184 VTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFD 243

Query: 497 TEKE 508
           TEKE
Sbjct: 244 TEKE 247
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>RL6_CAEEL (P47991) 60S ribosomal protein L6|
          Length = 217

 Score =  117 bits (293), Expect = 2e-26
 Identities = 64/103 (62%), Positives = 81/103 (78%), Gaps = 2/103 (1%)
 Frame = +2

Query: 203 KPTKLRSTITPGTVLILLAGRYMGKRVVFLKQL-KSGLLLITGPFKINGVPVRRVNQAYV 379
           K   LR T+TPGTVLI+LAGR+ GKRVVFLKQL +SGLLL+TGP KING P+RR+ QA+V
Sbjct: 63  KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122

Query: 380 IATSTKVDISGVKV-EKFDDKYFARDKKARAKKTEGELFETEK 505
           IATS KV++SGVK+ E  +D+YF R  K+ A+KT   +F + K
Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKR--KSTAQKTGKNIFASGK 163
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>RL6_SCHPO (P79071) 60S ribosomal protein L6|
          Length = 194

 Score =  116 bits (290), Expect = 4e-26
 Identities = 65/135 (48%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
 Frame = +2

Query: 92  AKNGGXXXXXXXXXXXXXXXXYPADDVKPRTASTRKPKPTKLRSTITPGTVLILLAGRYM 271
           AKNGG                YPA        + +  +PTKLR+++ PGTV ILLAGR+ 
Sbjct: 8   AKNGGERMVLPAGEAAAKY--YPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFR 65

Query: 272 GKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATST-KVDISGVKVEKFDDKYFA 448
           GKRVV L QL+   L++TGP+K+NGVP+RRVN  YVIATS  K+D+SGV VEKF   YFA
Sbjct: 66  GKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFA 124

Query: 449 RDKKARAKKTEGELF 493
           + K++   K +   F
Sbjct: 125 KQKRSGPVKKDEAFF 139
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>RL14E_SULAC (Q4JAJ9) 50S ribosomal protein L14e|
          Length = 96

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +2

Query: 236 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDIS 409
           G + +   GR  GK+ V +  + S  +L+TGP +INGV  RRVN  ++  T  KV+I+
Sbjct: 7   GRICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVEIN 64
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>RL14E_SULSO (Q980C1) 50S ribosomal protein L14e|
          Length = 96

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 29/94 (30%), Positives = 44/94 (46%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 406
           I  G + + + GR  G + V +  +    +L+TGP  I GV  RRVN  ++  T  K+DI
Sbjct: 4   IEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDI 63

Query: 407 SGVKVEKFDDKYFARDKKARAKKTEGELFETEKE 508
                     +  A D++ + K  E  L E  KE
Sbjct: 64  ----------QKGASDEEVKKKLEESNLTEYMKE 87
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>RL14E_SULTO (Q975L7) 50S ribosomal protein L14e|
          Length = 96

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/91 (29%), Positives = 42/91 (46%)
 Frame = +2

Query: 236 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDISGV 415
           G + +   GR  GK+ V +  +    +L+TGP  +N V  RRVN  ++  T  K+DI+  
Sbjct: 7   GRICVKTRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKIDIN-- 64

Query: 416 KVEKFDDKYFARDKKARAKKTEGELFETEKE 508
                     A D + + K  E  L E  K+
Sbjct: 65  --------KGASDDEVKKKLEEAGLIEFMKQ 87
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>RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e|
          Length = 103

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +2

Query: 236 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 406
           G V++ + GR  G++ V +  +    ++ITGP  I GV  RRVN  ++  T  K+DI
Sbjct: 8   GRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
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>RL14E_METKA (Q8TX43) 50S ribosomal protein L14e|
          Length = 94

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 406
           I  G + +  AGR  GK  V +  +    ++ITGP  + GV  RR N  ++  T  KVDI
Sbjct: 5   IEVGRICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKVDI 64
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>RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e|
          Length = 100

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 215 LRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATST 394
           +   +  G + +   GR  G++ V +  +    +L+TGP  + GV  RRVN  ++     
Sbjct: 1   MAKVVEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDK 60

Query: 395 KVDI 406
           KVDI
Sbjct: 61  KVDI 64
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>RL6_ENTHI (O15595) 60S ribosomal protein L6 (Fragment)|
          Length = 92

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 14/60 (23%)
 Frame = +2

Query: 155 YPADDV---KPRTASTRK-------PKP----TKLRSTITPGTVLILLAGRYMGKRVVFL 292
           YP DD+   + +   TRK        KP     KLR +I PG +LI++ G+Y GK+VV L
Sbjct: 20  YPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAGKKVVSL 79
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>RL14E_PYRFU (Q8U2L5) 50S ribosomal protein L14e|
          Length = 83

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 406
           I  G + +++AGR  G++VV +  +    +L+TG   +N V  RR+N  ++     K+DI
Sbjct: 4   IDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDI 62
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>RL14E_PYRHO (P59937) 50S ribosomal protein L14e|
          Length = 82

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 406
           I  G + +++AGR  G++ V +  +    +L+TG   +N V  RR+N  ++     K+DI
Sbjct: 4   IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDI 62
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>RL14E_PYRAB (Q9UZJ5) 50S ribosomal protein L14e|
          Length = 82

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 406
           I  G + +++AGR  G++ V +  +    +L+TG   +N V  RR+N  ++     K+DI
Sbjct: 4   IDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDI 62
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>RL27_RAT (P61354) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31
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>RL27_MOUSE (P61358) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31
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>RL27_HUMAN (P61353) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31
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>RL27_CHICK (P61355) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31
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>RL27_CERNI (P61357) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31
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>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31
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>RL27_BOVIN (P61356) 60S ribosomal protein L27|
          Length = 135

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVLVLAGRYSGRKAVIVKNIDDG 31
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>RL27_HIPCM (P61359) 60S ribosomal protein L27|
          Length = 135

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVMVLAGRYAGRKAVIVKNIDDG 31
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>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27|
          Length = 135

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVMVLAGRYAGRKAVIVKNIDDG 31
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>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27|
          Length = 135

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSG 310
           PG V+++LAGRY G++ V +K +  G
Sbjct: 6   PGKVVMVLAGRYAGRKAVIVKNIDDG 31
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>RL14E_PYRKO (Q5JJE4) 50S ribosomal protein L14e|
          Length = 83

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDI 406
           I  G + +++AGR  G++VV    +    +L+TG   +N V  RR+N  ++     +V+I
Sbjct: 4   IEVGRIAVVIAGRRAGQKVVVADIIDKNFVLVTGA-GLNKVKRRRMNVKHLEPLPERVNI 62
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>RL27_CAEEL (P91914) 60S ribosomal protein L27|
          Length = 136

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 233 PGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKI 340
           PG V+++L G+Y G++ V +KQ   G+   T P  I
Sbjct: 7   PGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAI 42
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>RL27_PEA (Q05462) 60S ribosomal protein L27|
          Length = 135

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSGL-------LLITGPFKINGVPVRR-------- 361
           + P   +ILL GRY GK+ V +K    G         L+ G  K     +++        
Sbjct: 5   LKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAK 64

Query: 362 ----------VNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARA----KKTEGELFET 499
                     VN  +++ T   +D+  +K     D   ++DKK  A    KK+  E F+T
Sbjct: 65  KSRVKAFVKLVNYQHLMPTRYTLDVD-LKDAVVPDVLQSKDKKVTALKETKKSLEERFKT 123

Query: 500 EK 505
            K
Sbjct: 124 GK 125
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>ELL_MOUSE (O08856) RNA polymerase II elongation factor ELL (Eleven-nineteen|
           lysine-rich leukemia protein)
          Length = 602

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = +2

Query: 173 KPRTASTRKPKPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVP 352
           K R +  +  + T+ RS I     +I   GRYMGK+V F K           P   + VP
Sbjct: 129 KARQSMAQAEEETRSRSAI-----VIKAGGRYMGKKVQFRK---------PAPGAADAVP 174

Query: 353 VRR----VNQAYVIATSTKVDISGVKVEKFDDK 439
            R+    +N A  I  S+    S V    F D+
Sbjct: 175 SRKRATPINLASAIRKSSGSGASSVVQRPFRDR 207
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>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 287 FLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVD 403
           FL  LKS L L +GP ++ G     +N+  VI  S+KVD
Sbjct: 487 FLSDLKSRLPLRSGPTRVCGHDTDIMNRDVVIVESSKVD 525
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>YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III|
          Length = 493

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 254 LAGRYMGKRVVFLKQLKSGLLLITGP 331
           LA RY GKRVVF+  L S LL +  P
Sbjct: 104 LASRYGGKRVVFVTILGSALLTLLNP 129
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>NAMA_LISMO (Q8Y4H1) NADPH dehydrogenase (EC 1.6.99.1) (Xenobiotic reductase)|
          Length = 338

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +2

Query: 266 YMGKRVVFLKQLKSGLLLITGPFKINGVPVRRVNQAYVIATSTKVDISGVKVEKFDDKYF 445
           + G +V F  +++ G  + TG   +    + R  QA  I  + + D+  V  E   + YF
Sbjct: 260 FPGYQVPFADEIRRGAGIATGALGL----ITRGEQAEEILCNERADLIIVGRELLRNPYF 315

Query: 446 ARDKKARAKKTEGELFETEKE 508
           A+D    A K  GE  E  K+
Sbjct: 316 AKD----AAKQLGETIEAPKQ 332
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>GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator of G-protein|
           signaling 4) (Protein G18) (G18.1b)
          Length = 160

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 244 ADPARWEVHGEARGVPQAAQVWPAPHHWTFQDQWCPSSPGEPGLCH 381
           A+  + E  GE +G PQ  + WP P+  T   +  P SP  PG  H
Sbjct: 3   AERPQEEEDGE-QGPPQDEEGWPPPNSTTRPWRSAPPSPPPPGTRH 47
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>SYT_NITEU (Q82VV1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 635

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 212 KLRSTITPGTVLILLAGRYMGKRVVFLKQLK--SGLLLITGPFKINGVPVRRVNQAYVIA 385
           ++  +I+PG     LAG+  GK V   +Q++  S L+LIT      G+ + R + A+++A
Sbjct: 22  EVAESISPGLARAALAGKLNGKLVDLSEQIETDSDLVLITDK-DSEGLEIIRHSCAHLLA 80

Query: 386 TSTKVDISGVKV 421
            + K    G +V
Sbjct: 81  HAVKELFPGTQV 92
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>V51K_BPL79 (P24125) 51.5 kDa protein|
          Length = 452

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 272 GKRVVFLKQLKSGLLLITGPFKINGVPVRRV 364
           G RV+FL   K  +  IT  FK++GVP+ +V
Sbjct: 25  GGRVLFLVHRKELIDQITNSFKVHGVPLNQV 55
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>RL27_YEAST (P38706) 60S ribosomal protein L27|
          Length = 136

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 25/117 (21%)
 Frame = +2

Query: 236 GTVLILLAGRYMGKRVVFLKQLKSGL-------LLITG----PFKI---NGVP------- 352
           G V +++ GRY GK+VV +K    G         L+ G    P K+   +G         
Sbjct: 8   GKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTK 67

Query: 353 ----VRRVNQAYVIATSTKVDISGVKVEKFDDKYFARDKKARAKKTEGELFETEKEA 511
               ++ VN  +++ T   +D+   K     + +    ++  AKK   + FE   +A
Sbjct: 68  IKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQA 124
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>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A|
          Length = 136

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 227 ITPGTVLILLAGRYMGKRVVFLKQLKSG 310
           + PG V ++  GR+ GK+VV L+ +  G
Sbjct: 5   LKPGKVALITRGRFAGKKVVILQAIDQG 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,763,883
Number of Sequences: 219361
Number of extensions: 1160544
Number of successful extensions: 3897
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3886
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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