ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4c02 |
|---|---|
| Clone Library Name | barley_pub |
>DEXT_STRDO (P39653) Dextranase precursor (EC 3.2.1.11)| (Alpha-1,6-glucan-6-glucanohydrolase) Length = 1337 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = +3 Query: 9 DVGXYQQAVSESTEHKSTKSAXEVQAAEDILPESPXKLCGPENKLREPNLRHQDSFDQLP 188 D +A S STK + Q+ + PE PE+ +P+ + D+ DQ Sbjct: 1142 DKNKTNEADSNKANQDSTKGSSADQSGKSTTPEDGPDNSSPEDPETKPSDPNTDTSDQEQ 1201 Query: 189 TLGNLPSTLVIPEQT 233 +LP V+P QT Sbjct: 1202 VKPSLP---VVPNQT 1213
>CAD23_MOUSE (Q99PF4) Cadherin-23 precursor (Otocadherin)| Length = 3354 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 144 REPNLRHQDSFDQLPTLGNLPSTLVIPEQTYIWQGIFEVSRT 269 R+ N++ D D PT N P ++ IPE T + IF V+ T Sbjct: 116 RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 157
>CAD23_HUMAN (Q9H251) Cadherin-23 precursor (Otocadherin)| Length = 3354 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 144 REPNLRHQDSFDQLPTLGNLPSTLVIPEQTYIWQGIFEVSRT 269 R+ N++ D D PT N P ++ IPE T + IF V+ T Sbjct: 116 RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 157
>CAD23_RAT (P58365) Cadherin-23 precursor (Otocadherin)| Length = 3317 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 144 REPNLRHQDSFDQLPTLGNLPSTLVIPEQTYIWQGIFEVSRT 269 R+ N++ D D PT N P ++ IPE T + IF V+ T Sbjct: 116 RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNAT 157
>NEST_HUMAN (P48681) Nestin| Length = 1618 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 9/63 (14%) Frame = +3 Query: 15 GXYQQAV-SESTEHKSTKSAXEVQAAED-------ILPESPXKLCGPENK-LREPNLRHQ 167 G YQ+++ S E + + +VQ ED + ESP + G ENK E NLR Q Sbjct: 926 GEYQESLRSLEEEGQELPQSADVQRWEDTVEKDQELAQESPPGMAGVENKDEAELNLREQ 985 Query: 168 DSF 176 D F Sbjct: 986 DGF 988
>RUVA_PROAC (Q6A8K8) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 201 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 238 SGKVSLRFQELESLPNYMMGFKLTCPPCTXAKA 336 SG VS L N+ +G K+ CPP T A A Sbjct: 6 SGTVSAAGPTWVVLDNHGVGIKVLCPPATAASA 38
>TXND2_HUMAN (Q86VQ3) Thioredoxin domain-containing protein 2| (Spermatid-specific thioredoxin-1) (Sptrx-1) Length = 553 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 78 VQAAEDILPESPXKLCGPENKLREPNLRHQDSFDQLPTLGNLPSTLVIPEQ 230 +Q+ ++ LP+S K P +E N+ + P LGN+P V P Q Sbjct: 127 IQSKKEDLPKSSEKAIQP----KESNIPKSSAKPIQPKLGNIPKASVKPSQ 173
>NUDT4_ARATH (Q9LE73) Nudix hydrolase 4 (EC 3.6.1.-) (AtNUDT4) (ADP-ribose| pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) Length = 207 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = +3 Query: 186 PTLGNLPSTLVIPEQTYIWQGIFEVSRTGISSELYD 293 P N+PST V+P Q I + + VSRTG + YD Sbjct: 22 PIFENIPSTKVVPAQ--IEKVVSLVSRTGRDLQRYD 55
>OR42B_DROME (Q9V9I4) Putative odorant receptor 42b| Length = 399 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%) Frame = -2 Query: 152 WLP--QFVLRATEFXWTLGQYVFCSLY 78 WLP Q VLR WTL +V+C+ Y Sbjct: 33 WLPPKQGVLRYVYLTWTLMTFVWCTTY 59
>GLGB_PSESM (Q881X0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 741 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +3 Query: 111 PXKLCGPENKLREPNLRHQDSFDQLPTLGNLPSTLVIPEQTYIWQGIFEVSRTG 272 P + G EN LRH + L P T+VI E++ W G+ E ++ G Sbjct: 439 PNRFGGRENLEAIDFLRHLNDVVALEA----PGTMVIAEESTAWPGVSESTQKG 488
>DPOA2_HUMAN (Q14181) DNA polymerase alpha subunit B (DNA polymerase alpha 70| kDa subunit) Length = 598 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Frame = +3 Query: 123 CGPENKLREPNL-----RHQDSFDQLPT-LGNLPSTLVIPEQTYIWQGIFEVSRTGISSE 284 C KL ++ R S Q+P L L + P Q I +GI R ++++ Sbjct: 259 CDSNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATK 318 Query: 285 LYDGI 299 LY+G+ Sbjct: 319 LYEGV 323
>PUR4_SALTY (P74881) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1295 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Frame = -1 Query: 351 FDYFKCFGXGTGWTSELESHHIVRKRFQ--FLKPQ 253 F Y G G GW + +H VR F+ F +PQ Sbjct: 1094 FSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQ 1128
>PUR4_SALTI (Q8Z4L6) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1295 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Frame = -1 Query: 351 FDYFKCFGXGTGWTSELESHHIVRKRFQ--FLKPQ 253 F Y G G GW + +H VR F+ F +PQ Sbjct: 1094 FSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQ 1128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,244,290 Number of Sequences: 219361 Number of extensions: 940374 Number of successful extensions: 2201 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2172 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2201 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
