ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4b13 |
|---|---|
| Clone Library Name | barley_pub |
>UN13C_MOUSE (Q8K0T7) Unc-13 homolog C (Munc13-3) (Fragment)| Length = 1430 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +2 Query: 278 TLTVTIKRGNNLRQSVGNASAFCKLTLGNNPARLTKIVSTGESPEWDEAF 427 T+TV +G + G++ + + +G N R TK + +P WDE F Sbjct: 1219 TITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRR-TKTIFGNLNPVWDEKF 1267
>UN13C_RAT (Q62770) Unc-13 homolog C (Munc13-3)| Length = 2204 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +2 Query: 278 TLTVTIKRGNNLRQSVGNASAFCKLTLGNNPARLTKIVSTGESPEWDEAF 427 T+TV +G + G++ + + +G N R TK + +P WDE F Sbjct: 1213 TITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRR-TKTIFGNLNPVWDEKF 1261
>UN13C_HUMAN (Q8NB66) Unc-13 homolog C (Munc13-3) (Fragment)| Length = 1190 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = +2 Query: 278 TLTVTIKRGNNLRQSVGNASAFCKLTLGNNPARLTKIVSTGESPEWDEAF 427 T+TV +G + G++ + + +G N R TK + +P WDE F Sbjct: 199 TITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRR-TKTIFGNLNPVWDEKF 247
>YKH3_SCHPO (Q9UT00) Hypothetical protein PYUK71.03c in chromosome I| Length = 1225 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +2 Query: 272 PGTLTVTIKRGNNLRQSVGNA-SAFCKLTLGNNPARLTKIVSTGESPEWDEAF 427 PG L T+ + L +A+ KL + N T+ + +P W+E+F Sbjct: 570 PGVLQFTVHQCKELSNDPSKRPTAYAKLIINNKEVYTTRKIKKNNNPSWEESF 622
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 30.4 bits (67), Expect = 2.2 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = +2 Query: 173 SVAASEAIPLLQYLIQSGPPRFQEKAELLLQCLPGTLTVTIKRGNNL--RQSVGNASAFC 346 + A E + + LIQ+ Q+ AEL L++ ++R +L R+ + S + Sbjct: 773 TAAELEEVLQVNSLIQT-----QKSAELAA----ALLSIYMERAEDLPLRKGTKHPSPYA 823 Query: 347 KLTLGNNPARLTKIVSTGESPEWDEAFAWAFDSP 448 LT+G+ + TK VS +P WDE+ ++ P Sbjct: 824 TLTVGDTSHK-TKTVSQTSAPVWDESASFLIRKP 856
>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing protein)| Length = 1104 Score = 30.4 bits (67), Expect = 2.2 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Frame = +2 Query: 173 SVAASEAIPLLQYLIQSGPPRFQEKAELLLQCLPGTLTVTIKRGNNL--RQSVGNASAFC 346 + A E + + LIQ+ Q+ AEL L++ ++R +L R+ + S + Sbjct: 773 TAAELEEVLQVNSLIQT-----QKSAELAA----ALLSIYMERAEDLPLRKGTKHLSPYA 823 Query: 347 KLTLGNNPARLTKIVSTGESPEWDEAFAWAFDSP 448 LT+G++ + TK +S +P WDE+ ++ P Sbjct: 824 TLTVGDSSHK-TKTISQTSAPVWDESASFLIRKP 856
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 29.6 bits (65), Expect = 3.8 Identities = 24/71 (33%), Positives = 34/71 (47%) Frame = +1 Query: 88 SNSRSSTGFTISAKTSMVGLPSGSV*SSISCCLRGYSSTSVLDTVWPTTVSREGRVATSV 267 S+S SST + SA +S L S S+ S+ S S +S + + P T S ATS Sbjct: 210 SSSLSSTAASNSATSS--SLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA 267 Query: 268 LAWDTYSYYKT 300 A + + Y T Sbjct: 268 SATSSSAQYNT 278
>ELMO1_MOUSE (Q8BPU7) Engulfment and cell motility protein 1 (CED-12 homolog)| Length = 727 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = +2 Query: 86 EATQEAALDSLYLLRQAWSACPAEVFKAQSVAASEAIPLLQYLIQSGPPRFQEKAELLLQ 265 E Q +++D+ + ++ +V AQ + I LL +++SG R+Q+ +++ Sbjct: 90 ERIQSSSMDAKLEALKDLASLSRDVTFAQEFINLDGISLLTQMVESGTERYQKLQKIMKP 149 Query: 266 CLPGTLTVTI 295 C L+ T+ Sbjct: 150 CFGDMLSFTL 159
>ELMO1_HUMAN (Q92556) Engulfment and cell motility protein 1 (CED-12 homolog)| Length = 727 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = +2 Query: 86 EATQEAALDSLYLLRQAWSACPAEVFKAQSVAASEAIPLLQYLIQSGPPRFQEKAELLLQ 265 E Q +++D+ + ++ +V AQ + I LL +++SG R+Q+ +++ Sbjct: 90 ERIQSSSMDAKLEALKDLASLSRDVTFAQEFINLDGISLLTQMVESGTERYQKLQKIMKP 149 Query: 266 CLPGTLTVTI 295 C L+ T+ Sbjct: 150 CFGDMLSFTL 159
>SN_MOUSE (Q62230) Sialoadhesin precursor (Sialic acid-binding Ig-like| lectin-1) (Siglec-1) (Sheep erythrocyte receptor) (SER) (CD169 antigen) Length = 1694 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 10/67 (14%) Frame = +1 Query: 193 YSSTSVLDTVWPTTVSREG-RVATSVLAWDT------YSYYKTWQQ---SEAISGKC*RI 342 + + +V TVWP +EG +V + L W T Y++YK QQ + +I+ ++ Sbjct: 1077 FDAQAVRVTVWPNATVQEGQQVNLTCLVWSTHQDSLSYTWYKGGQQLLGARSITLPSVKV 1136 Query: 343 LQAYSWK 363 L A S++ Sbjct: 1137 LDATSYR 1143
>STAU2_XENTR (Q5M7M7) Double-stranded RNA-binding protein Staufen homolog 2| Length = 624 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +2 Query: 239 QEKAELLLQCLPGTLTVTIKRGNNLRQSVGNASAFCKLTLGNNPAR--LTKIVSTGESPE 412 Q + E ++Q G T T G N + + NA+ L LG + + K GE+P+ Sbjct: 353 QRRREFVMQVKVGEETAT-GTGPNKKTAKRNAAEAMLLQLGYKASSPVVEKTGKRGENPD 411 Query: 413 WDE 421 WDE Sbjct: 412 WDE 414
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/30 (40%), Positives = 22/30 (73%) Frame = +2 Query: 173 SVAASEAIPLLQYLIQSGPPRFQEKAELLL 262 ++A +E+IP+L +I++G PR +E A +L Sbjct: 546 AIAEAESIPVLVEIIRTGSPRNRENAAAIL 575 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,653,426 Number of Sequences: 219361 Number of extensions: 1060547 Number of successful extensions: 2667 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2667 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
