ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4b13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104909.1| Zea mays PCO111730 mRNA sequence Length = 1169 Score = 545 bits (275), Expect = e-152 Identities = 404/446 (90%), Gaps = 1/446 (0%) Strand = Plus / Plus Query: 10 ttccctcgtntgaggagtcactgaacctgctacaatatgcattccgcatcttgtaacatc 69 ||||||||| ||||| |||||||||||||| ||| | |||||||| |||||||||||||| Sbjct: 307 ttccctcgtctgagg-gtcactgaacctgccacattgtgcattcctcatcttgtaacatc 365 Query: 70 ccttaaaactggttctgaagcaactcaagaagcagcactggattcactatatctgctaag 129 |||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || Sbjct: 366 ccttaaaactggttctgaggcaactcaagaggcagcactagattcactatatcttctcag 425 Query: 130 acaagcatggtcggcttgcccagcggaagtgtttaaagctcaatcagttgctgcctcaga 189 ||||| ||||| ||||||||||| ||||| |||||||| |||||||| ||||| || || Sbjct: 426 gcaagcttggtcagcttgcccagctgaagtatttaaagcacaatcagtcgctgcatcgga 485 Query: 190 ggctattcctctacttcagtacttgatacagtctggcccaccacggtttcaagagaaggc 249 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 486 ggctattcctctacttcagtacttgatacagtctggcccaccgcggtttcaagaaaaggc 545 Query: 250 agagttgctacttcagtgcttgcctgggacacttacagttactataaaacgtggcaacaa 309 ||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct: 546 agaattgcttcttcagtgcttgcctgggactcttactgttacaataaaacgtggcaacaa 605 Query: 310 tctgaggcaatcagtgggaaatgctagcgcattctgcaagcttactcttggaaataatcc 369 ||| ||||||||||| |||||| |||| || ||||||||||||||||||||||||||||| Sbjct: 606 tctaaggcaatcagttggaaatcctagtgccttctgcaagcttactcttggaaataatcc 665 Query: 370 agcaaggctgacaaagattgtctcgactggtgagtcacctgaatgggatgaggccttcgc 429 | || ||||||||||||||||||||||||| | | |||||||||||||||| ||||| || Sbjct: 666 accacggctgacaaagattgtctcgactggcgcgacacctgaatgggatgaagcctttgc 725 Query: 430 atgggcttttgacagccctcctaagg 455 |||||| |||||||| ||||| |||| Sbjct: 726 atgggcatttgacagtcctcccaagg 751
>dbj|AK105686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B10, full insert sequence Length = 3335 Score = 464 bits (234), Expect = e-127 Identities = 381/430 (88%) Strand = Plus / Plus Query: 26 gtcactgaacctgctacaatatgcattccgcatcttgtaacatcccttaaaactggttct 85 ||||||||||||||||| |||||||||| |||||||||||||| || || ||||||||| Sbjct: 2497 gtcactgaacctgctaccttatgcattcctcatcttgtaacatctctcaagactggttct 2556 Query: 86 gaagcaactcaagaagcagcactggattcactatatctgctaagacaagcatggtcggct 145 || ||||| || ||||| |||||||| ||||| ||||| || |||||||||||| ||| Sbjct: 2557 gaggcaacccaggaagctgcactggactcactgtatcttcttagacaagcatggggagct 2616 Query: 146 tgcccagcggaagtgtttaaagctcaatcagttgctgcctcagaggctattcctctactt 205 || |||| ||| | ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 2617 tgtgcagcagaaatatttaaagctcagtcagttgctgcctcagaggctattccgctactt 2676 Query: 206 cagtacttgatacagtctggcccaccacggtttcaagagaaggcagagttgctacttcag 265 |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||| Sbjct: 2677 cagtacttgatacagtctggcccacctcggttccaagaaaaggcagaattgcttcttcag 2736 Query: 266 tgcttgcctgggacacttacagttactataaaacgtggcaacaatctgaggcaatcagtg 325 ||||||||||| || | |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 2737 tgcttgcctggtactttgacagttactataaagcgtggcaacaatctaaggcaatcagtt 2796 Query: 326 ggaaatgctagcgcattctgcaagcttactcttggaaataatccagcaaggctgacaaag 385 |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 2797 ggaaatcctagcgcattttgcaagcttactcttggaaataatccgccaaggctgacaaag 2856 Query: 386 attgtctcgactggtgagtcacctgaatgggatgaggccttcgcatgggcttttgacagc 445 |||||||| ||||||| |||||||||||||||| ||||| || ||||| ||||||||| Sbjct: 2857 attgtctcaactggtgcaacacctgaatgggatgaagcctttgcgtgggcgtttgacagc 2916 Query: 446 cctcctaagg 455 ||||| |||| Sbjct: 2917 cctccaaagg 2926
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 396 bits (200), Expect = e-107 Identities = 320/360 (88%) Strand = Plus / Minus Query: 26 gtcactgaacctgctacaatatgcattccgcatcttgtaacatcccttaaaactggttct 85 ||||||||||||||||| |||||||||| |||||||||||||| || || ||||||||| Sbjct: 6414405 gtcactgaacctgctaccttatgcattcctcatcttgtaacatctctcaagactggttct 6414346 Query: 86 gaagcaactcaagaagcagcactggattcactatatctgctaagacaagcatggtcggct 145 || ||||| || ||||| |||||||| ||||| ||||| || |||||||||||| ||| Sbjct: 6414345 gaggcaacccaggaagctgcactggactcactgtatcttcttagacaagcatggggagct 6414286 Query: 146 tgcccagcggaagtgtttaaagctcaatcagttgctgcctcagaggctattcctctactt 205 || |||| ||| | ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 6414285 tgtgcagcagaaatatttaaagctcagtcagttgctgcctcagaggctattccgctactt 6414226 Query: 206 cagtacttgatacagtctggcccaccacggtttcaagagaaggcagagttgctacttcag 265 |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||| Sbjct: 6414225 cagtacttgatacagtctggcccacctcggttccaagaaaaggcagaattgcttcttcag 6414166 Query: 266 tgcttgcctgggacacttacagttactataaaacgtggcaacaatctgaggcaatcagtg 325 ||||||||||| || | |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 6414165 tgcttgcctggtactttgacagttactataaagcgtggcaacaatctaaggcaatcagtt 6414106 Query: 326 ggaaatgctagcgcattctgcaagcttactcttggaaataatccagcaaggctgacaaag 385 |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 6414105 ggaaatcctagcgcattttgcaagcttactcttggaaataatccgccaaggctgacaaag 6414046 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 384 agattgtctcgactggtgagtcacctgaatgggatgaggccttcgcatgggcttttgaca 443 |||||||||| ||||||| |||||||||||||||| ||||| || ||||| ||||||| Sbjct: 6412973 agattgtctcaactggtgcaacacctgaatgggatgaagcctttgcgtgggcgtttgaca 6412914 Query: 444 gccctcctaagg 455 ||||||| |||| Sbjct: 6412913 gccctccaaagg 6412902
>dbj|AP005545.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0638H11 Length = 162746 Score = 396 bits (200), Expect = e-107 Identities = 320/360 (88%) Strand = Plus / Minus Query: 26 gtcactgaacctgctacaatatgcattccgcatcttgtaacatcccttaaaactggttct 85 ||||||||||||||||| |||||||||| |||||||||||||| || || ||||||||| Sbjct: 81349 gtcactgaacctgctaccttatgcattcctcatcttgtaacatctctcaagactggttct 81290 Query: 86 gaagcaactcaagaagcagcactggattcactatatctgctaagacaagcatggtcggct 145 || ||||| || ||||| |||||||| ||||| ||||| || |||||||||||| ||| Sbjct: 81289 gaggcaacccaggaagctgcactggactcactgtatcttcttagacaagcatggggagct 81230 Query: 146 tgcccagcggaagtgtttaaagctcaatcagttgctgcctcagaggctattcctctactt 205 || |||| ||| | ||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 81229 tgtgcagcagaaatatttaaagctcagtcagttgctgcctcagaggctattccgctactt 81170 Query: 206 cagtacttgatacagtctggcccaccacggtttcaagagaaggcagagttgctacttcag 265 |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||| Sbjct: 81169 cagtacttgatacagtctggcccacctcggttccaagaaaaggcagaattgcttcttcag 81110 Query: 266 tgcttgcctgggacacttacagttactataaaacgtggcaacaatctgaggcaatcagtg 325 ||||||||||| || | |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 81109 tgcttgcctggtactttgacagttactataaagcgtggcaacaatctaaggcaatcagtt 81050 Query: 326 ggaaatgctagcgcattctgcaagcttactcttggaaataatccagcaaggctgacaaag 385 |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct: 81049 ggaaatcctagcgcattttgcaagcttactcttggaaataatccgccaaggctgacaaag 80990 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 384 agattgtctcgactggtgagtcacctgaatgggatgaggccttcgcatgggcttttgaca 443 |||||||||| ||||||| |||||||||||||||| ||||| || ||||| ||||||| Sbjct: 79917 agattgtctcaactggtgcaacacctgaatgggatgaagcctttgcgtgggcgtttgaca 79858 Query: 444 gccctcctaagg 455 ||||||| |||| Sbjct: 79857 gccctccaaagg 79846
>emb|AJ630655.1| Cicer arietinum partial mRNA for C2 domain-containing protein (ORF 313-1) Length = 1065 Score = 83.8 bits (42), Expect = 5e-13 Identities = 120/146 (82%) Strand = Plus / Plus Query: 110 gattcactatatctgctaagacaagcatggtcggcttgcccagcggaagtgtttaaagct 169 |||||||| | |||||| |||||||| ||||| |||||||| || ||||| | | |||| Sbjct: 189 gattcactttttctgctcagacaagcttggtcagcttgccctgctgaagtttcaagagct 248 Query: 170 caatcagttgctgcctcagaggctattcctctacttcagtacttgatacagtctggccca 229 || || |||| || |||| ||||||||| | || |||||||| || ||||||||||| Sbjct: 249 cagtcgattgcagctgcagacgctattcctttcctgcagtacttaatccagtctggcccg 308 Query: 230 ccacggtttcaagagaaggcagagtt 255 || |||||||||||||| |||||||| Sbjct: 309 cctcggtttcaagagaaagcagagtt 334
>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence Length = 126187 Score = 60.0 bits (30), Expect = 7e-06 Identities = 99/122 (81%) Strand = Plus / Plus Query: 128 agacaagcatggtcggcttgcccagcggaagtgtttaaagctcaatcagttgctgcctca 187 |||||||| ||||| || ||||| || ||||| | | |||||| ||| |||| || || Sbjct: 96332 agacaagcttggtcagcatgccctgctgaagtctcaagagctcagtcaattgcagctgca 96391 Query: 188 gaggctattcctctacttcagtacttgatacagtctggcccaccacggtttcaagagaag 247 || ||||||||| | || |||||||| || |||||||||||||| || ||||| |||||| Sbjct: 96392 gatgctattccttttctgcagtacttaatccagtctggcccacctcgatttcaggagaag 96451 Query: 248 gc 249 || Sbjct: 96452 gc 96453
>ref|NM_127781.4| Arabidopsis thaliana unknown protein AT2G22125 mRNA, complete cds Length = 6941 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Plus Query: 170 caatcagttgctgcctcagaggctattcctctacttcagtacttgatacagtctggccca 229 |||||||||||||| |||| || || || |||||||||||| | || || || || ||| Sbjct: 6176 caatcagttgctgctgcagacgccatccccctacttcagtacctaatccaatcaggtcca 6235 Query: 230 ccacggtttcaagagaa 246 |||||||| || ||||| Sbjct: 6236 ccacggttccaggagaa 6252
>gb|BT010988.1| Arabidopsis thaliana At2g22125 mRNA, complete cds Length = 930 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Plus Query: 170 caatcagttgctgcctcagaggctattcctctacttcagtacttgatacagtctggccca 229 |||||||||||||| |||| || || || |||||||||||| | || || || || ||| Sbjct: 460 caatcagttgctgctgcagacgccatccccctacttcagtacctaatccaatcaggtcca 519 Query: 230 ccacggtttcaagagaa 246 |||||||| || ||||| Sbjct: 520 ccacggttccaggagaa 536
>gb|BT010720.1| Arabidopsis thaliana At2g22125 mRNA, complete cds Length = 1236 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Plus Query: 170 caatcagttgctgcctcagaggctattcctctacttcagtacttgatacagtctggccca 229 |||||||||||||| |||| || || || |||||||||||| | || || || || ||| Sbjct: 501 caatcagttgctgctgcagacgccatccccctacttcagtacctaatccaatcaggtcca 560 Query: 230 ccacggtttcaagagaa 246 |||||||| || ||||| Sbjct: 561 ccacggttccaggagaa 577
>gb|AC007232.6| Arabidopsis thaliana chromosome 2 clone T16B14 map mi238, complete sequence Length = 45943 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 170 caatcagttgctgcctcagaggctattcctctacttcagtacttgatacagtctggccca 229 |||||||||||||| |||| || || || |||||||||||| | || || || || ||| Sbjct: 3576 caatcagttgctgctgcagacgccatccccctacttcagtacctaatccaatcaggtcca 3517 Query: 230 ccacggtttcaagagaa 246 |||||||| || ||||| Sbjct: 3516 ccacggttccaggagaa 3500
>gb|AC007168.5| Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence Length = 81236 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 170 caatcagttgctgcctcagaggctattcctctacttcagtacttgatacagtctggccca 229 |||||||||||||| |||| || || || |||||||||||| | || || || || ||| Sbjct: 79463 caatcagttgctgctgcagacgccatccccctacttcagtacctaatccaatcaggtcca 79404 Query: 230 ccacggtttcaagagaa 246 |||||||| || ||||| Sbjct: 79403 ccacggttccaggagaa 79387
>emb|BX821282.1|CNS0A8BO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL31ZG02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1199 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Plus Query: 170 caatcagttgctgcctcagaggctattcctctacttcagtacttgatacagtctggccca 229 |||||||||||||| |||| || || || |||||||||||| | || || || || ||| Sbjct: 553 caatcagttgctgctgcagacgccatccccctacttcagtacctaatccaatcaggtcca 612 Query: 230 ccacggtttcaagagaa 246 |||||||| || ||||| Sbjct: 613 ccacggttccaggagaa 629
>gb|AC124549.5| Mus musculus BAC clone RP23-284E24 from 13, complete sequence Length = 199240 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 ctgaagcaactcaagaagcagcactgga 111 ||||||| |||||||||||||| ||||| Sbjct: 99795 ctgaagccactcaagaagcagctctgga 99768
>emb|AL157812.5| Human DNA sequence from clone RP11-14B2 on chromosome 13q21.1-21.3 Contains GSSs and STSs, complete sequence Length = 166971 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcaaggctgacaaagattgt 390 |||||||||||||||||||| Sbjct: 23057 gcaaggctgacaaagattgt 23038
>emb|AL589722.17| Mouse DNA sequence from clone RP23-169M24 on chromosome 13 Contains the gene for a novel protein similar to ribosomal protein S8 (Rps8) and a CpG island, complete sequence Length = 200125 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tgtaacatcccttaaaactg 80 |||||||||||||||||||| Sbjct: 34783 tgtaacatcccttaaaactg 34764
>gb|AC068907.53| Mus musculus strain C57BL/6J clone rp23-347f7 map 13, complete sequence Length = 232472 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 84 ctgaagcaactcaagaagcagcactgga 111 ||||||| |||||||||||||| ||||| Sbjct: 22054 ctgaagccactcaagaagcagctctgga 22027
>gb|DP000030.1| Sus scrofa target 116 genomic scaffold Length = 380805 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 cacttacagttactataaaa 298 |||||||||||||||||||| Sbjct: 53549 cacttacagttactataaaa 53568
>emb|AL365294.4|CNS05TF4 Human chromosome 14 DNA sequence BAC R-746E9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188478 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 ccagcaaggctgacaaagat 387 |||||||||||||||||||| Sbjct: 160845 ccagcaaggctgacaaagat 160826
>emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, complete sequence Length = 277607 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aagaagcagcactggattca 115 |||||||||||||||||||| Sbjct: 3081 aagaagcagcactggattca 3100
>gb|AC006256.1|AC006256 Homo sapiens chromosome 18, clone hRPK.12_J_19, complete sequence Length = 157803 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ccagcaaggctgacaaagat 387 |||||||||||||||||||| Sbjct: 60466 ccagcaaggctgacaaagat 60485
>gb|AF027153.1|AF027153 Homo sapiens sodium/myo-inositol cotransporter (SLC5A3) gene, complete cds Length = 23213 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 acatcccttaaaactggttctgaa 88 ||||||||||||| |||||||||| Sbjct: 11217 acatcccttaaaaatggttctgaa 11194
>emb|AJ130806.1|PRE130806 Pinnixa retinens partial mitochondrial 16S rRNA gene, isolate TX1 Length = 517 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 acacttacagttactataaa 297 |||||||||||||||||||| Sbjct: 321 acacttacagttactataaa 302
>emb|AL356016.2|CNS05TD6 Human chromosome 14 DNA sequence BAC R-96H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 156292 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ccagcaaggctgacaaagat 387 |||||||||||||||||||| Sbjct: 139221 ccagcaaggctgacaaagat 139240 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,527,963 Number of Sequences: 3902068 Number of extensions: 3527963 Number of successful extensions: 58938 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58880 Number of HSP's gapped (non-prelim): 58 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
