ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags4a22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YWS2_CAEEL (Q10938) Putative zinc finger protein B0310.2 32 0.59
2YP01_MOUSE (Q8BQM4) Protein C030036P15Rik 28 5.0
3ZN606_HUMAN (Q8WXB4) Zinc finger protein 606 (Zinc finger protei... 28 8.5
4ZNF32_MOUSE (Q80V23) Zinc finger protein 32 (Zinc finger protein... 28 8.5

>YWS2_CAEEL (Q10938) Putative zinc finger protein B0310.2|
          Length = 413

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 99  HTCPHCEIXFCDEDNIVLHSK 161
           HTCPHC   F  +DN++ H K
Sbjct: 336 HTCPHCHKKFNRKDNLLRHKK 356



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>YP01_MOUSE (Q8BQM4) Protein C030036P15Rik|
          Length = 679

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 25  NPFETVNIEVIHVMWGMCVNSGR 93
           NP E++  E ++V+W +C  SGR
Sbjct: 153 NPVESIANEAVNVLWNVCECSGR 175



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>ZN606_HUMAN (Q8WXB4) Zinc finger protein 606 (Zinc finger protein 328)|
          Length = 792

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 99  HTCPHCEIXFCDEDNIVLHSKQSXXXXXX--XXCNKXYS 209
           + C HCE  FC   ++++H +            C K +S
Sbjct: 736 YKCNHCEKAFCKNSSLIIHQRMHSGEKRFICSECGKAFS 774



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>ZNF32_MOUSE (Q80V23) Zinc finger protein 32 (Zinc finger protein 637)|
          Length = 272

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 141 CPHHRXKFHSEGKCVITARIYT 76
           C H R  FH+ G C++  +++T
Sbjct: 218 CSHCRKSFHTRGNCLLHGKVHT 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,840,486
Number of Sequences: 219361
Number of extensions: 408982
Number of successful extensions: 1450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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