| Clone Name | bags4a22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR716596.2|CNS0GFVH Tetraodon nigroviridis full-length cDNA Length = 1193 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 87 tggccgtgatgacacacttgccctcactg 115 |||| |||||||||||||||||||||||| Sbjct: 540 tggctgtgatgacacacttgccctcactg 568
>emb|CR705172.2|CNS0G728 Tetraodon nigroviridis full-length cDNA Length = 1193 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 87 tggccgtgatgacacacttgccctcactg 115 |||| |||||||||||||||||||||||| Sbjct: 540 tggctgtgatgacacacttgccctcactg 568
>emb|CR668944.2|CNS0FF4M Tetraodon nigroviridis full-length cDNA Length = 706 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 87 tggccgtgatgacacacttgccctcactg 115 |||| |||||||||||||||||||||||| Sbjct: 325 tggctgtgatgacacacttgccctcactg 353
>emb|CR655863.2|CNS0F519 Tetraodon nigroviridis full-length cDNA Length = 564 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 87 tggccgtgatgacacacttgccctcactg 115 |||| |||||||||||||||||||||||| Sbjct: 313 tggctgtgatgacacacttgccctcactg 341
>emb|CR647753.2|CNS0EYRZ Tetraodon nigroviridis full-length cDNA Length = 564 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Plus Query: 87 tggccgtgatgacacacttgccctcactg 115 |||| |||||||||||||||||||||||| Sbjct: 313 tggctgtgatgacacacttgccctcactg 341
>dbj|AK135917.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420437H22 product:unclassifiable, full insert sequence Length = 1399 Score = 46.1 bits (23), Expect = 0.044 Identities = 29/31 (93%) Strand = Plus / Minus Query: 85 tctggccgtgatgacacacttgccctcactg 115 |||||| |||||||| ||||||||||||||| Sbjct: 474 tctggcggtgatgacccacttgccctcactg 444
>emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chromosome 4, complete sequence Length = 193363 Score = 46.1 bits (23), Expect = 0.044 Identities = 29/31 (93%) Strand = Plus / Plus Query: 85 tctggccgtgatgacacacttgccctcactg 115 |||||| |||||||| ||||||||||||||| Sbjct: 25023 tctggcggtgatgacccacttgccctcactg 25053 Score = 46.1 bits (23), Expect = 0.044 Identities = 29/31 (93%) Strand = Plus / Plus Query: 85 tctggccgtgatgacacacttgccctcactg 115 |||||| |||||||| ||||||||||||||| Sbjct: 15613 tctggcggtgatgacccacttgccctcactg 15643
>gb|AC122931.4| Mus musculus BAC clone RP23-15C15 from 9, complete sequence Length = 192274 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 ctgttaatattgaggtaatacatgt 62 |||| |||||||||||||||||||| Sbjct: 17211 ctgtgaatattgaggtaatacatgt 17187
>emb|CR674738.2|CNS0FJLK Tetraodon nigroviridis full-length cDNA Length = 731 Score = 42.1 bits (21), Expect = 0.69 Identities = 27/29 (93%) Strand = Plus / Plus Query: 87 tggccgtgatgacacacttgccctcactg 115 |||| ||||| |||||||||||||||||| Sbjct: 249 tggctgtgataacacacttgccctcactg 277
>gb|AC153011.4| Mus musculus BAC clone RP23-316O20 from chromosome 9, complete sequence Length = 190332 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 ctgttaatattgaggtaatacatgt 62 |||| |||||||||||||||||||| Sbjct: 104279 ctgtgaatattgaggtaatacatgt 104255
>ref|XM_723080.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07333) partial mRNA Length = 1140 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 atttgaaactgttaatattg 49 |||||||||||||||||||| Sbjct: 195 atttgaaactgttaatattg 176
>emb|AL121900.26|HSBA379J5 Human DNA sequence from clone RP11-379J5 on chromosome 20 Contains the 3' end of the SEC23B gene for Sec23 (S. cerevisiae) homolog B, two novel genes, the 5' end of the HARS2 gene for histidyl-tRNA synthetase 2, a pseudogene similar to part of homeobox proteins and two CpG islands, complete sequence Length = 149933 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 atattgaggtaatacatgtt 63 |||||||||||||||||||| Sbjct: 70362 atattgaggtaatacatgtt 70381
>emb|AL121949.13|HSDJ407E4 Human DNA sequence from clone RP3-407E4 on chromosome 6q12-13, complete sequence Length = 140287 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 atctattgttatgtaataaa 200 |||||||||||||||||||| Sbjct: 88522 atctattgttatgtaataaa 88503
>dbj|AK074304.1| Homo sapiens cDNA FLJ23724 fis, clone HEP13989 Length = 2396 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 atattgaggtaatacatgtt 63 |||||||||||||||||||| Sbjct: 1074 atattgaggtaatacatgtt 1093 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,706,379 Number of Sequences: 3902068 Number of extensions: 1706379 Number of successful extensions: 110975 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110953 Number of HSP's gapped (non-prelim): 22 length of query: 215 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 193 effective length of database: 17,147,199,772 effective search space: 3309409555996 effective search space used: 3309409555996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)