ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags4a06 |
|---|---|
| Clone Library Name | barley_pub |
>MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 38.5 bits (88), Expect = 0.018 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Frame = +3 Query: 36 TPNIVKELN---LKVGKLSTGDSLDMSPH--DESAILSNEATVKDMEGAAVAYVADLFST 200 T V EL+ + G ++TGDS P +E ++ +ME AAVA V F T Sbjct: 129 TEEAVSELDGIQVAKGTIATGDSFMNDPKRVEEVRARFSDLYAVEMEAAAVAQVCHQFKT 188 Query: 201 PAIFVKAVTDIVDGEKPTAEEFLQNLISVTMALDQAVLQVV 323 P + ++A++DI E + F Q L + + VL+V+ Sbjct: 189 PFVVIRALSDIAGKESHVS--FDQFLEQAAVHSTELVLKVI 227
>MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 229 Score = 35.4 bits (80), Expect = 0.15 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Frame = +3 Query: 60 NLKVGKLSTGDSLDMSPHDESAILSN--EATVKDMEGAAVAYVADLFSTPAIFVKAVTDI 233 ++K G + +GDS S + I ++ T +ME A+A V F+ P + V+A++D Sbjct: 139 SVKRGLICSGDSFINSEDKIAQIKADFPNVTGVEMEATAIAQVCYAFNVPFVVVRAISDG 198 Query: 234 VDGEKPTA-EEFLQNLISVTMALDQAVLQVVD 326 DG+ + EEFL + AL VL ++D Sbjct: 199 GDGKASMSFEEFLPLAAKQSSAL---VLGMID 227
>DEOD_LISMO (Q8Y644) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 233 Score = 32.7 bits (73), Expect = 1.0 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +3 Query: 45 IVKELNLKVGKLSTGDSLDMSPHDESAILSNEATVKDMEGAAVAYVADLFSTPAIFVKAV 224 I K L+LKVG + + D D+ + +ME AA+ +A + A+ + V Sbjct: 142 IEKGLSLKVGNVFSADRFYNDQLDKQQLADYGVLGIEMEAAALYTLAQKYGRRALAILTV 201 Query: 225 TD-IVDGEKPTAEE 263 +D I GE+ +AEE Sbjct: 202 SDHIFTGEETSAEE 215
>DEOD_LISMF (Q71YG0) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 233 Score = 32.7 bits (73), Expect = 1.0 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +3 Query: 45 IVKELNLKVGKLSTGDSLDMSPHDESAILSNEATVKDMEGAAVAYVADLFSTPAIFVKAV 224 I K L+LKVG + + D D+ + +ME AA+ +A + A+ + V Sbjct: 142 IEKGLSLKVGNVFSADRFYNDQLDKQQLADYGVLGIEMEAAALYTLAQKYGRRALAILTV 201 Query: 225 TD-IVDGEKPTAEE 263 +D I GE+ +AEE Sbjct: 202 SDHIFTGEETSAEE 215
>DEOD_LISIN (Q92AF2) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 233 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +3 Query: 45 IVKELNLKVGKLSTGDSLDMSPHDESAILSNEATVKDMEGAAVAYVADLFSTPAIFVKAV 224 + K L+LKVG + + D D+ + +ME AA+ +A + A+ + V Sbjct: 142 VEKGLSLKVGNVFSADRFYNDQLDKQQLADYGVLGIEMEAAALYTLAQKYGRRALAILTV 201 Query: 225 TD-IVDGEKPTAEE 263 +D I GE+ +AEE Sbjct: 202 SDHIFTGEETSAEE 215
>APEB_MYCTU (O06634) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 433 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 481 RGSRECKTWVESPGKHYTSNNIYSGSLDLWNPEQ 380 R RE W + PG+++T + +GSL WN EQ Sbjct: 35 RELREADRWPDKPGRYFT---VRAGSLVAWNAEQ 65
>APEB_MYCBO (P59951) Probable M18-family aminopeptidase 2 (EC 3.4.11.-)| Length = 433 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 481 RGSRECKTWVESPGKHYTSNNIYSGSLDLWNPEQ 380 R RE W + PG+++T + +GSL WN EQ Sbjct: 35 RELREADRWPDKPGRYFT---VRAGSLVAWNAEQ 65
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 30.8 bits (68), Expect = 3.8 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = -2 Query: 160 SISLTVASLLSIADSS*GDISRESPVDSFPTFKLSSFTIFGVSNVFL 20 S SL ASL S+ DS+ GD+ E +S T LS+ T VS+ L Sbjct: 111 SASLLPASLSSLCDSTCGDVDDEQQFNSLATSPLSTETQSEVSDPLL 157
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 30.4 bits (67), Expect = 5.0 Identities = 24/68 (35%), Positives = 34/68 (50%) Frame = -2 Query: 310 TAWSSAIVTEIRFCRNSSAVGFSPSTMSVTALTKIAGVENKSXXXXXXAPSISLTVASLL 131 T S V E R + AVG ST+ + +L + +ENKS APS +++ Sbjct: 604 TCLSLGEVPEGRVRSSFLAVGCDDSTVRILSLDPDSTLENKSVQALTSAPS----ALNIM 659 Query: 130 SIADSS*G 107 S+ADSS G Sbjct: 660 SMADSSSG 667
>HM21_CAEEL (Q22811) Homeobox protein ceh-21| Length = 495 Score = 30.4 bits (67), Expect = 5.0 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = -1 Query: 416 IFRLPRFVEPRTA*RKVGRSEIRDTFATDEVYHLQDCLVKRHRHRDQVLQKLLGCWLLPI 237 + R+ EP A RK IR TF ++ LQ + HR ++ QKL L Sbjct: 373 VARITGLDEPTPAKRKKTVKVIRLTFTETQLKSLQKSFQQNHRPTREMRQKLSATLELDF 432 Query: 236 NNVGHSF 216 + VG+ F Sbjct: 433 STVGNFF 439
>GATA_AGRT5 (Q8UFS8) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 493 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +3 Query: 99 DMSPHDESAILSNEATVKDMEGAAVAYVADLFSTPAIFVKAVTDIVDGEKPTAEEFL-QN 275 DM+ + I S A ++EG + V DLF+T + +A + ++DG KP E + QN Sbjct: 54 DMAKASDERIASGSAG--ELEGVPLG-VKDLFATRDVHTQACSHVLDGFKPKYESTVTQN 110 Query: 276 L 278 L Sbjct: 111 L 111
>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 269 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +3 Query: 72 GKLSTGDSLDMSPHDESAILSN-EATVKDMEGAAVAYVADLFSTPAIFVKAVTDIVDGEK 248 G++++GD + I+ A +MEGAA A+VA + P + ++ ++D E+ Sbjct: 165 GRVASGDLFVSDAQTRARIIREFGAHGVEMEGAAFAHVASVNGVPFVIIRCISDGAGAEQ 224 Query: 249 PTAEEF 266 + + Sbjct: 225 DVSMSY 230
>TSGA_SALTY (Q8ZLK7) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.5 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 438 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 614 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 615 TPMDSAQWLMDAPWQLY 665 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254
>TSGA_SALTI (Q8Z1Z8) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.5 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 438 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 614 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 615 TPMDSAQWLMDAPWQLY 665 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254
>TSGA_SALPA (Q5PLW2) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.5 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 438 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 614 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 615 TPMDSAQWLMDAPWQLY 665 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254
>TSGA_SALCH (Q57J00) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.5 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 438 FPGDSTQVLHSRDPLVKNSWRLLRAILWDFVQFYKLCSLV-RLGSIRWCIVVLE*MMGTG 614 FP HS+ P+VK W + +L F+ LC ++ +LG I W V E G G Sbjct: 185 FPALGKHAQHSQAPVVKEKWGI--GVL--FLAVAALCYILGQLGFISW---VPEYAKGLG 237 Query: 615 TPMDSAQWLMDAPWQLY 665 ++ A L+ W Y Sbjct: 238 MSLNDAGALVSDFWMSY 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,924,493 Number of Sequences: 219361 Number of extensions: 2167599 Number of successful extensions: 6052 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6052 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
