Clone Information

BLAST Search Result

Clone Name	bags4a06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_185403.2\| Oryza sativa (japonica cultivar-group), mRNA	327	3e-86
2	dbj\|AB110165.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	327	3e-86
3	gb\|AF458088.1\|AF458088 Oryza sativa methylthioadenosine/S-adenos...	327	3e-86
4	dbj\|AK104797.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	327	3e-86
5	dbj\|AK104481.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	327	3e-86
6	dbj\|AK066172.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	327	3e-86
7	gb\|AY106448.1\| Zea mays PCO149605 mRNA sequence	161	4e-36
8	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	149	1e-32
9	dbj\|AP001552.1\| Oryza sativa (japonica cultivar-group) geneomic ...	149	1e-32
10	ref\|NM_119650.2\| Arabidopsis thaliana catalytic AT4G34840 mRNA, ...	58	4e-05
11	gb\|BT012099.1\| Arabidopsis thaliana At4g34840 mRNA sequence	58	4e-05
12	gb\|BT010195.1\| Arabidopsis thaliana At4g34840 gene, complete cds	58	4e-05
13	emb\|AJ237993.1\|VVI237993 Vitis vinifera mRNA for putative ripeni...	50	0.009
14	emb\|AL732625.8\| Mouse DNA sequence from clone RP23-169H17 on chr...	42	2.3
15	gb\|AC108914.8\| Mus musculus chromosome 1, clone RP23-435E15, com...	40	9.1
16	gb\|AC159092.11\| Mus musculus chromosome 1, clone RP23-103C13, co...	40	9.1
17	gb\|AC099710.8\| Mus musculus, clone RP23-366C6, complete sequence	40	9.1
18	gb\|AC175696.2\| Otolemur garnetti, clone XX-8122D2, complete sequ...	40	9.1
19	emb\|AL034557.8\|PFMAL4P1 Plasmodium falciparum MAL4P1	40	9.1
20	gb\|AC027761.6\| Homo sapiens chromosome 8, clone RP11-655E7, comp...	40	9.1
21	gb\|AC007481.6\|AC007481 Homo sapiens chromosome 8, clone RP11-50A...	40	9.1
22	gb\|AC134312.3\| Homo sapiens chromosome 16 clone RP11-863P13, com...	40	9.1
23	gb\|AC090819.7\| Homo sapiens chromosome 8, clone CTD-2544L4, comp...	40	9.1
24	gb\|AC127455.4\| Homo sapiens chromosome 16 clone CTD-3057O21, com...	40	9.1
25	emb\|BX323833.4\| Pig DNA sequence from clone XX-554F3, complete s...	40	9.1
26	emb\|AL627085.13\| Mouse DNA sequence from clone RP23-374N19 on ch...	40	9.1
27	emb\|AL731695.11\| Mouse DNA sequence from clone RP23-188M14 on ch...	40	9.1
28	dbj\|AP003547.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.1
29	dbj\|AP003693.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.1

>ref|NM_185403.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1070

 Score =  327 bits (165), Expect = 3e-86
 Identities = 234/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggttgggaagctgt 81
           ||||||||||||  ||||| |||||| |||| |||||||||||||||||||||||||| |
Sbjct: 499 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggttgggaagctct 558

                                                                       
Query: 82  caactggtgattctctagatatgtctcctcatgatgagtcagcaatactgagcaatgaag 141
           ||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||| |
Sbjct: 559 caactggcgattctctagatatgtctccccatgacgagtcagcaatattgaacaatgatg 618

                                                                       
Query: 142 ctacagtcaaggatatggagggagcagcggtggcttatgttgctgacttgttctcaacac 201
           ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||
Sbjct: 619 ctacagtcaaggatatggagggagccgcggtggcatatgttgctgacatgttttcaacac 678

                                                                       
Query: 202 ccgctatctttgtcaaagctgtgaccgacattgttgatggggagaagccaacagccgagg 261
           | || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 679 cggcaatctttgtgaaagctgtgactgatattgttgatggggagaaaccaacagccgagg 738

                            
Query: 262 agtttctgcaaaacctg 278
           |||||||||| ||||||
Sbjct: 739 agtttctgcagaacctg 755

to top

>dbj|AB110165.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, complete cds, clone: 12FPG037
          Length = 1103

 Score =  327 bits (165), Expect = 3e-86
 Identities = 234/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggttgggaagctgt 81
           ||||||||||||  ||||| |||||| |||| |||||||||||||||||||||||||| |
Sbjct: 463 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggttgggaagctct 522

                                                                       
Query: 82  caactggtgattctctagatatgtctcctcatgatgagtcagcaatactgagcaatgaag 141
           ||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||| |
Sbjct: 523 caactggcgattctctagatatgtctccccatgacgagtcagcaatattgaacaatgatg 582

                                                                       
Query: 142 ctacagtcaaggatatggagggagcagcggtggcttatgttgctgacttgttctcaacac 201
           ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||
Sbjct: 583 ctacagtcaaggatatggagggagccgcggtggcatatgttgctgacatgttttcaacac 642

                                                                       
Query: 202 ccgctatctttgtcaaagctgtgaccgacattgttgatggggagaagccaacagccgagg 261
           | || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 643 cggcaatctttgtgaaagctgtgactgatattgttgatggggagaaaccaacagccgagg 702

                            
Query: 262 agtttctgcaaaacctg 278
           |||||||||| ||||||
Sbjct: 703 agtttctgcagaacctg 719

to top

>gb|AF458088.1|AF458088 Oryza sativa methylthioadenosine/S-adenosyl homocysteine
           nucleosidase mRNA, complete cds
          Length = 1227

 Score =  327 bits (165), Expect = 3e-86
 Identities = 234/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggttgggaagctgt 81
           ||||||||||||  ||||| |||||| |||| |||||||||||||||||||||||||| |
Sbjct: 499 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggttgggaagctct 558

                                                                       
Query: 82  caactggtgattctctagatatgtctcctcatgatgagtcagcaatactgagcaatgaag 141
           ||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||| |
Sbjct: 559 caactggcgattctctagatatgtctccccatgacgagtcagcaatattgaacaatgatg 618

                                                                       
Query: 142 ctacagtcaaggatatggagggagcagcggtggcttatgttgctgacttgttctcaacac 201
           ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||
Sbjct: 619 ctacagtcaaggatatggagggagccgcggtggcatatgttgctgacatgttttcaacac 678

                                                                       
Query: 202 ccgctatctttgtcaaagctgtgaccgacattgttgatggggagaagccaacagccgagg 261
           | || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 679 cggcaatctttgtgaaagctgtgactgatattgttgatggggagaaaccaacagccgagg 738

                            
Query: 262 agtttctgcaaaacctg 278
           |||||||||| ||||||
Sbjct: 739 agtttctgcagaacctg 755

to top

>dbj|AK104797.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H06, full
           insert sequence
          Length = 1070

 Score =  327 bits (165), Expect = 3e-86
 Identities = 234/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggttgggaagctgt 81
           ||||||||||||  ||||| |||||| |||| |||||||||||||||||||||||||| |
Sbjct: 499 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggttgggaagctct 558

                                                                       
Query: 82  caactggtgattctctagatatgtctcctcatgatgagtcagcaatactgagcaatgaag 141
           ||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||| |
Sbjct: 559 caactggcgattctctagatatgtctccccatgacgagtcagcaatattgaacaatgatg 618

                                                                       
Query: 142 ctacagtcaaggatatggagggagcagcggtggcttatgttgctgacttgttctcaacac 201
           ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||
Sbjct: 619 ctacagtcaaggatatggagggagccgcggtggcatatgttgctgacatgttttcaacac 678

                                                                       
Query: 202 ccgctatctttgtcaaagctgtgaccgacattgttgatggggagaagccaacagccgagg 261
           | || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 679 cggcaatctttgtgaaagctgtgactgatattgttgatggggagaaaccaacagccgagg 738

                            
Query: 262 agtttctgcaaaacctg 278
           |||||||||| ||||||
Sbjct: 739 agtttctgcagaacctg 755

to top

>dbj|AK104481.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G11, full
           insert sequence
          Length = 1121

 Score =  327 bits (165), Expect = 3e-86
 Identities = 234/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggttgggaagctgt 81
           ||||||||||||  ||||| |||||| |||| |||||||||||||||||||||||||| |
Sbjct: 499 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggttgggaagctct 558

                                                                       
Query: 82  caactggtgattctctagatatgtctcctcatgatgagtcagcaatactgagcaatgaag 141
           ||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||| |
Sbjct: 559 caactggcgattctctagatatgtctccccatgacgagtcagcaatattgaacaatgatg 618

                                                                       
Query: 142 ctacagtcaaggatatggagggagcagcggtggcttatgttgctgacttgttctcaacac 201
           ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||
Sbjct: 619 ctacagtcaaggatatggagggagccgcggtggcatatgttgctgacatgttttcaacac 678

                                                                       
Query: 202 ccgctatctttgtcaaagctgtgaccgacattgttgatggggagaagccaacagccgagg 261
           | || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 679 cggcaatctttgtgaaagctgtgactgatattgttgatggggagaaaccaacagccgagg 738

                            
Query: 262 agtttctgcaaaacctg 278
           |||||||||| ||||||
Sbjct: 739 agtttctgcagaacctg 755

to top

>dbj|AK066172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056A05, full
           insert sequence
          Length = 1140

 Score =  327 bits (165), Expect = 3e-86
 Identities = 234/257 (91%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggttgggaagctgt 81
           ||||||||||||  ||||| |||||| |||| |||||||||||||||||||||||||| |
Sbjct: 521 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggttgggaagctct 580

                                                                       
Query: 82  caactggtgattctctagatatgtctcctcatgatgagtcagcaatactgagcaatgaag 141
           ||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||| |
Sbjct: 581 caactggcgattctctagatatgtctccccatgacgagtcagcaatattgaacaatgatg 640

                                                                       
Query: 142 ctacagtcaaggatatggagggagcagcggtggcttatgttgctgacttgttctcaacac 201
           ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||
Sbjct: 641 ctacagtcaaggatatggagggagccgcggtggcatatgttgctgacatgttttcaacac 700

                                                                       
Query: 202 ccgctatctttgtcaaagctgtgaccgacattgttgatggggagaagccaacagccgagg 261
           | || |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 701 cggcaatctttgtgaaagctgtgactgatattgttgatggggagaaaccaacagccgagg 760

                            
Query: 262 agtttctgcaaaacctg 278
           |||||||||| ||||||
Sbjct: 761 agtttctgcagaacctg 777

to top

>gb|AY106448.1| Zea mays PCO149605 mRNA sequence
          Length = 796

 Score =  161 bits (81), Expect = 4e-36
 Identities = 196/233 (84%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 49  tgaaagaactcaatttgaaggttgggaagctgtcaactggtgattctctag-atatgtct 107
           |||| ||||||||||||||| |||| ||  |||| ||||| |||||||| | ||||||||
Sbjct: 214 tgaaggaactcaatttgaagattggcaaattgtcgactggggattctctgggatatgtct 273

                                                                       
Query: 108 cctcatgatgagtcagcaatactgagcaatgaagctacagtcaaggatatggagggagca 167
           || || ||||||   |  |||||||||||||| |||||||| ||||||||||||||||| 
Sbjct: 274 ccccaggatgagaaggtgatactgagcaatgatgctacagtaaaggatatggagggagct 333

                                                                       
Query: 168 gcggtggcttatgttgctgacttgttctcaacacccgctatctttgtcaaagctgtgacc 227
           || ||||| ||||| || ||| |||| ||||| || || |||||||| ||||| ||||| 
Sbjct: 334 gctgtggcatatgtcgccgacatgttttcaacgccagcgatctttgtgaaagccgtgact 393

                                                                
Query: 228 gacattgttgatggggagaagccaacagccgaggagtttctgcaaaacctgat 280
           || || || |||||||||||||||||| | |||||||||||||| ||||||||
Sbjct: 394 gatatcgtggatggggagaagccaacatctgaggagtttctgcagaacctgat 446

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                          
Query: 160    agggagcagcggtggcttatgttgctgacttgttctcaacacccgctatctttgtcaaag 219
              ||||||| |||||||| |||||||||||| |||| |||||||| || |||||||| ||||
Sbjct: 694175 agggagccgcggtggcatatgttgctgacatgttttcaacaccggcaatctttgtgaaag 694234

                                                                         
Query: 220    ctgtgaccgacattgttgatggggagaagccaacagccgaggagtttctgcaaaacctg 278
              ||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 694235 ctgtgactgatattgttgatggggagaaaccaacagccgaggagtttctgcagaacctg 694293



 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                          
Query: 67     aggttgggaagctgtcaactggtgattctctagatatgtctcctcatgatgagtcagcaa 126
              ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 693698 aggttgggaagctctcaactggcgattctctagatatgtctccccatgacgagtcagcaa 693757

                                                  
Query: 127    tactgagcaatgaagctacagtcaaggatatggagg 162
              || ||| |||||| ||||||||||||||||||||||
Sbjct: 693758 tattgaacaatgatgctacagtcaaggatatggagg 693793



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 22     gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggt 70
              ||||||||||||  ||||| |||||| |||| |||||||||||||||||
Sbjct: 693428 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggt 693476

to top

>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
              clone:P0029D06
          Length = 150120

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                          
Query: 160    agggagcagcggtggcttatgttgctgacttgttctcaacacccgctatctttgtcaaag 219
              ||||||| |||||||| |||||||||||| |||| |||||||| || |||||||| ||||
Sbjct: 100603 agggagccgcggtggcatatgttgctgacatgttttcaacaccggcaatctttgtgaaag 100662

                                                                         
Query: 220    ctgtgaccgacattgttgatggggagaagccaacagccgaggagtttctgcaaaacctg 278
              ||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 100663 ctgtgactgatattgttgatggggagaaaccaacagccgaggagtttctgcagaacctg 100721



 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                          
Query: 67     aggttgggaagctgtcaactggtgattctctagatatgtctcctcatgatgagtcagcaa 126
              ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 100126 aggttgggaagctctcaactggcgattctctagatatgtctccccatgacgagtcagcaa 100185

                                                  
Query: 127    tactgagcaatgaagctacagtcaaggatatggagg 162
              || ||| |||||| ||||||||||||||||||||||
Sbjct: 100186 tattgaacaatgatgctacagtcaaggatatggagg 100221



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 22    gaaaaacatttgaaaccccaaatatagtgaaagaactcaatttgaaggt 70
             ||||||||||||  ||||| |||||| |||| |||||||||||||||||
Sbjct: 99856 gaaaaacatttgctacccctaatatattgaaggaactcaatttgaaggt 99904

to top

>ref|NM_119650.2| Arabidopsis thaliana catalytic AT4G34840 mRNA, complete cds
          Length = 1062

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 135 aatgaagctacagtcaaggatatggagggagcagcggtggcttatgttgctga 187
           ||||| |||||||| || ||||||||||||||||| ||||| ||||| |||||
Sbjct: 562 aatgatgctacagttaaagatatggagggagcagcagtggcctatgtggctga 614

to top

>gb|BT012099.1| Arabidopsis thaliana At4g34840 mRNA sequence
          Length = 600

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 135 aatgaagctacagtcaaggatatggagggagcagcggtggcttatgttgctga 187
           ||||| |||||||| || ||||||||||||||||| ||||| ||||| |||||
Sbjct: 376 aatgatgctacagttaaagatatggagggagcagcagtggcctatgtggctga 428

to top

>gb|BT010195.1| Arabidopsis thaliana At4g34840 gene, complete cds
          Length = 765

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 135 aatgaagctacagtcaaggatatggagggagcagcggtggcttatgttgctga 187
           ||||| |||||||| || ||||||||||||||||| ||||| ||||| |||||
Sbjct: 541 aatgatgctacagttaaagatatggagggagcagcagtggcctatgtggctga 593

to top

>emb|AJ237993.1|VVI237993 Vitis vinifera mRNA for putative ripening-related protein (grip58
           gene)
          Length = 1154

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 90  gattctctagatatgtctcctcatgatgagtcagcaatactgagcaatgaagctacagtc 149
           |||||| ||||||||||||| |||||||| ||| ||||  ||   ||||  |||||||||
Sbjct: 644 gattctttagatatgtctccacatgatgaatcatcaattttggcaaatggtgctacagtc 703

                            
Query: 150 aaggatatggagggagc 166
           || || |||||||||||
Sbjct: 704 aaagacatggagggagc 720

to top

>emb|AL732625.8| Mouse DNA sequence from clone RP23-169H17 on chromosome 2, complete
              sequence
          Length = 224038

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 91     attctctagatatgtctcctcatga 115
              |||||||| ||||||||||||||||
Sbjct: 150069 attctctacatatgtctcctcatga 150045

to top

>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence
          Length = 212494

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    ttggatgtataatgtttccc 442
              ||||||||||||||||||||
Sbjct: 203386 ttggatgtataatgtttccc 203367

to top

>gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, complete sequence
          Length = 196891

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    ttggatgtataatgtttccc 442
              ||||||||||||||||||||
Sbjct: 171273 ttggatgtataatgtttccc 171292

to top

>gb|AC099710.8| Mus musculus, clone RP23-366C6, complete sequence
          Length = 225122

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ccccaaatatagtgaaagaa 56
             ||||||||||||||||||||
Sbjct: 83465 ccccaaatatagtgaaagaa 83484

to top

>gb|AC175696.2| Otolemur garnetti, clone XX-8122D2, complete sequence
          Length = 43820

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   attttgtacaattttacaaa 542
             ||||||||||||||||||||
Sbjct: 24390 attttgtacaattttacaaa 24371

to top

>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1
          Length = 347582

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 523    attttgtacaattttacaaa 542
              ||||||||||||||||||||
Sbjct: 102007 attttgtacaattttacaaa 101988

to top

>gb|AC027761.6| Homo sapiens chromosome 8, clone RP11-655E7, complete sequence
          Length = 175657

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   atggttgatggatgcacctt 654
             ||||||||||||||||||||
Sbjct: 42106 atggttgatggatgcacctt 42087

to top

>gb|AC007481.6|AC007481 Homo sapiens chromosome 8, clone RP11-50A1, complete sequence
          Length = 137032

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 635   atggttgatggatgcacctt 654
             ||||||||||||||||||||
Sbjct: 32764 atggttgatggatgcacctt 32783

to top

>gb|AC134312.3| Homo sapiens chromosome 16 clone RP11-863P13, complete sequence
          Length = 205610

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ccaaatatagtgaaagaact 58
             ||||||||||||||||||||
Sbjct: 57047 ccaaatatagtgaaagaact 57028

to top

>gb|AC090819.7| Homo sapiens chromosome 8, clone CTD-2544L4, complete sequence
          Length = 208961

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    ttttgtacaattttacaaac 543
              ||||||||||||||||||||
Sbjct: 125530 ttttgtacaattttacaaac 125511

to top

>gb|AC127455.4| Homo sapiens chromosome 16 clone CTD-3057O21, complete sequence
          Length = 184641

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ccaaatatagtgaaagaact 58
             ||||||||||||||||||||
Sbjct: 39735 ccaaatatagtgaaagaact 39754

to top

>emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete sequence
          Length = 121483

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   tccacccaggttttacattc 469
             ||||||||||||||||||||
Sbjct: 59282 tccacccaggttttacattc 59301

to top

>emb|AL627085.13| Mouse DNA sequence from clone RP23-374N19 on chromosome 4, complete
            sequence
          Length = 79097

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  gatgtataatgtttccctgg 445
            ||||||||||||||||||||
Sbjct: 6230 gatgtataatgtttccctgg 6249

to top

>emb|AL731695.11| Mouse DNA sequence from clone RP23-188M14 on chromosome X, complete
              sequence
          Length = 177098

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     ccccaaatatagtgaaagaa 56
              ||||||||||||||||||||
Sbjct: 168559 ccccaaatatagtgaaagaa 168578

to top

>dbj|AP003547.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1399D2
          Length = 169660

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    ttttgtacaattttacaaac 543
              ||||||||||||||||||||
Sbjct: 130764 ttttgtacaattttacaaac 130745

to top

>dbj|AP003693.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1762B7, complete
             sequence
          Length = 150581

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   ttttgtacaattttacaaac 543
             ||||||||||||||||||||
Sbjct: 31411 ttttgtacaattttacaaac 31392


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,937,693
Number of Sequences: 3902068
Number of extensions: 5937693
Number of successful extensions: 104841
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104730
Number of HSP's gapped (non-prelim): 109
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result