ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags1p20 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 32.0 bits (71), Expect = 1.6 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 12/105 (11%) Frame = -3 Query: 467 NTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKNSSAR----- 303 N S+ E V + I FL LV + N TT + +P N S R Sbjct: 849 NGSIEEVHASFVEVRANGLIRDFLKIDLVKSPILYSGKRNDTTSSGFIPNNGSDRTNINP 908 Query: 302 -------RYRTSHESSVSRLQCASKECPSFLFACAFDGFSSNIGN 189 + T H+ ++ L +KEC SFL + D S IG+ Sbjct: 909 FYFKARIQSLTQHQGTIRTLLNRNKECQSFLILSSSD--CSRIGS 951
>SYQ_SALTY (Q8ZQX5) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 554 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 411 GIATHDRGQGKGVFDQTSVVKTELD-TDQVSRDVDWPRINMTLDCEYS 551 GIA +GQ FD T+ VK +++ D + DV+W + + D YS Sbjct: 52 GIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYS 99
>SYQ_SALTI (Q8Z8F8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 554 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 411 GIATHDRGQGKGVFDQTSVVKTELD-TDQVSRDVDWPRINMTLDCEYS 551 GIA +GQ FD T+ VK +++ D + DV+W + + D YS Sbjct: 52 GIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYS 99
>PTP3_DICDI (P54637) Tyrosine-protein phosphatase 3 (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase 3) Length = 989 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Frame = -3 Query: 515 PINIPAHLVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTK 336 P+N+P++ + HNT + S + +L+ L N + +++ +T TTT Sbjct: 213 PLNVPSNHTRTTLAMHNTKSLSTS--------NIGLLNILPNQQSSSSSSLSSTTTTTTT 264 Query: 335 TA---MVPK----NSSARRYRTSHESS 276 T+ ++P+ NS+ + ++ SS Sbjct: 265 TSSSLLMPQSLFNNSTYNNHHNNNNSS 291
>HLR1_YEAST (Q04429) Protein HLR1 (LRE1 homolog)| Length = 423 Score = 30.4 bits (67), Expect = 4.5 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Frame = -3 Query: 599 RLITASSHLSSMCSHHAIFTIKCHVDPWPINIPAHLVSVQFSFHNTSLIENSLPLSSVMC 420 +++T S ++S+ S +I + C+ IN + ++ ++ + L + P ++++ Sbjct: 225 QILTKQSSVTSLFSSRSITPVSCN-----INNAGRINAISGNYLDDVLYDLDTPATTLI- 278 Query: 419 SYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKNSSARRYRTSHESSVSRLQCASKECP 240 Q T+ + + P++SS ++Y + SVS S+EC Sbjct: 279 ---------------QDIDNLQTSINERVRLSPQSSSIKKYFSKDGKSVSSFNFQSQECD 323 Query: 239 SFLFACAF---DGFSSNIGNSTPSTE 171 F F SS+I +S T+ Sbjct: 324 MVSFTEDFAHVTSLSSSILDSEKQTD 349
>LACR_STAAW (P0A0P9) Lactose phosphotransferase system repressor| Length = 251 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 494 LVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKN 315 L++ + + H ++I N LP+ ++ HF V ++ E + IT + AM+ K Sbjct: 107 LLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKL 166 Query: 314 SSARRYRTSH 285 ++ + +S+ Sbjct: 167 RFSKMFFSSN 176
>LACR_STAAU (P0A0Q0) Lactose phosphotransferase system repressor| Length = 251 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 494 LVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKN 315 L++ + + H ++I N LP+ ++ HF V ++ E + IT + AM+ K Sbjct: 107 LLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKL 166 Query: 314 SSARRYRTSH 285 ++ + +S+ Sbjct: 167 RFSKMFFSSN 176
>LACR_STAAS (Q6G7B8) Lactose phosphotransferase system repressor| Length = 251 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 494 LVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKN 315 L++ + + H ++I N LP+ ++ HF V ++ E + IT + AM+ K Sbjct: 107 LLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKL 166 Query: 314 SSARRYRTSH 285 ++ + +S+ Sbjct: 167 RFSKMFFSSN 176
>LACR_STAAR (Q6GEN3) Lactose phosphotransferase system repressor| Length = 251 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 494 LVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKN 315 L++ + + H ++I N LP+ ++ HF V ++ E + IT + AM+ K Sbjct: 107 LLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKL 166 Query: 314 SSARRYRTSH 285 ++ + +S+ Sbjct: 167 RFSKMFFSSN 176
>LACR_STAAN (P67744) Lactose phosphotransferase system repressor| Length = 251 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 494 LVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKN 315 L++ + + H ++I N LP+ ++ HF V ++ E + IT + AM+ K Sbjct: 107 LLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKL 166 Query: 314 SSARRYRTSH 285 ++ + +S+ Sbjct: 167 RFSKMFFSSN 176
>LACR_STAAM (P67743) Lactose phosphotransferase system repressor| Length = 251 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 494 LVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKN 315 L++ + + H ++I N LP+ ++ HF V ++ E + IT + AM+ K Sbjct: 107 LLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKL 166 Query: 314 SSARRYRTSH 285 ++ + +S+ Sbjct: 167 RFSKMFFSSN 176
>LACR_STAAC (Q5HE08) Lactose phosphotransferase system repressor| Length = 251 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/70 (22%), Positives = 35/70 (50%) Frame = -3 Query: 494 LVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAEQQAITRSTNTTTKTAMVPKN 315 L++ + + H ++I N LP+ ++ HF V ++ E + IT + AM+ K Sbjct: 107 LLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKL 166 Query: 314 SSARRYRTSH 285 ++ + +S+ Sbjct: 167 RFSKMFFSSN 176
>YSV_BPP2 (P36935) Hypothetical 30.4 kDa protein in S-V intergenic region| (ORF-30) Length = 261 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 627 DIISPPCYTETHHSFVTLVQYVLASCYIHNQVS 529 DI PP +T + + Y+L +CYIHN+ S Sbjct: 102 DITKPPHIIKTIIVILASIFYILLACYIHNEQS 134
>YJF1_YEAST (P47046) Hypothetical 91.3 kDa protein in TDH1-MTR4 intergenic| region Length = 822 Score = 30.0 bits (66), Expect = 5.9 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 11/124 (8%) Frame = -3 Query: 467 NTSLIENSL-PLSSVMCSYAILHFLVN--------ILVAEQQAITRSTNTTTKTAMVPKN 315 N+S+I + L P+S+ C H + L ++ R+T TK VP Sbjct: 226 NSSVIRHKLGPISTSKCPKKPSHSHFSKLKKYNSFFLGPKENRYKRNTQQATK---VPTE 282 Query: 314 SSARRYRTSHESS--VSRLQCASKECPSFLFACAFDGFSSNIGNSTPSTELPCKSLSSIL 141 +++H SS VSRL S SFL F + GNST + P + SI+ Sbjct: 283 K-----KSNHRSSQYVSRLSTISDISKSFL---NFLALNEKNGNSTSTARTPSEGRVSII 334 Query: 140 THEG 129 +EG Sbjct: 335 INEG 338
>MUTL_RICPR (Q9ZC88) DNA mismatch repair protein mutL| Length = 595 Score = 29.6 bits (65), Expect = 7.7 Identities = 23/109 (21%), Positives = 43/109 (39%) Frame = -3 Query: 554 HAIFTIKCHVDPWPINIPAHLVSVQFSFHNTSLIENSLPLSSVMCSYAILHFLVNILVAE 375 +A+ I +DP +++ H + FH+ + + N L + A Sbjct: 284 YALCVIFLQIDPQLVDVNVHPAKAEVRFHDPNYVRNIL------------------IEAI 325 Query: 374 QQAITRSTNTTTKTAMVPKNSSARRYRTSHESSVSRLQCASKECPSFLF 228 + A+T + T T KNS + T H++ + + + E SF F Sbjct: 326 KNALTNKSQITATTIGSDKNSLVNKEPTIHKA--TNVNSKASEYTSFNF 372
>PDR6_ORYSA (Q8GU87) Pleiotropic drug resistance protein 6| Length = 1450 Score = 29.6 bits (65), Expect = 7.7 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 336 NGNGAKEQQRKAVPYQP*KLCFKTTMCFKRMP 241 NG+ K+Q+ +P+QP +CFK + +P Sbjct: 805 NGHNLKDQKGMVLPFQPLSMCFKNINYYVDVP 836
>SYQ_ECOL6 (Q8FJW4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 553 Score = 29.6 bits (65), Expect = 7.7 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 411 GIATHDRGQGKGVFDQTSVVKTELD-TDQVSRDVDWPRINMTLDCEYS 551 GIA +GQ FD T+ VK +++ D + DV+W + + + YS Sbjct: 52 GIAQDYKGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGNVRYS 99
>SYQ_ECO57 (Q8X9H8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 553 Score = 29.6 bits (65), Expect = 7.7 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 411 GIATHDRGQGKGVFDQTSVVKTELD-TDQVSRDVDWPRINMTLDCEYS 551 GIA +GQ FD T+ VK +++ D + DV+W + + + YS Sbjct: 52 GIAQDYKGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGNVRYS 99
>SYQ_SHIFL (Q83LY4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 554 Score = 29.6 bits (65), Expect = 7.7 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 411 GIATHDRGQGKGVFDQTSVVKTELD-TDQVSRDVDWPRINMTLDCEYS 551 GIA +GQ FD T+ VK +++ D + DV+W + + + YS Sbjct: 53 GIAQDYKGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGNVRYS 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,281,224 Number of Sequences: 219361 Number of extensions: 1862857 Number of successful extensions: 4590 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4588 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
