ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466490.1| Oryza sativa (japonica cultivar-group), mRNA 168 1e-38
2dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
4dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
5ref|NM_123602.2| Arabidopsis thaliana unknown protein AT5G42370 ... 44 0.55
6gb|AY142485.1| Arabidopsis thaliana unknown protein (At5g42370) ... 44 0.55
7gb|AF360310.1| Arabidopsis thaliana unknown protein (At5g42370) ... 44 0.55
8emb|BX830017.1|CNS0A18Z Arabidopsis thaliana Full-length cDNA Co... 44 0.55
9dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.55
10ref|XM_718051.1| Candida albicans SC5314 putative transmembrane ... 42 2.2
11ref|XM_717904.1| Candida albicans SC5314 putative transmembrane ... 42 2.2
12gb|AC149367.2| Phakopsora pachyrhizi clone JGIAFNA-53G15, comple... 40 8.6
13gb|AC149397.2| Phakopsora pachyrhizi clone JGIAFNA-61H13, comple... 40 8.6
14gb|AC004643.1| Homo sapiens chromosome 16, cosmid clone 363E3 (L... 40 8.6
15gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome... 40 8.6
16emb|BX890590.11| Zebrafish DNA sequence from clone DKEY-15H19 in... 40 8.6
17gb|AC135081.3| Mus musculus BAC clone RP24-131A24 from chromosom... 40 8.6
18emb|Z19153.1|CEC38C10 Caenorhabditis elegans Cosmid C38C10, comp... 40 8.6
19emb|AL844525.1| Human DNA sequence from clone RP11-158M19 on chr... 40 8.6
20gb|AC175377.3| Mus musculus chromosome 5, clone wi1-1993I8, comp... 40 8.6
21gb|AY114512.1| Mus musculus NSK2 (Nsk2) gene, promoter region, e... 40 8.6
22gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, comple... 40 8.6
23gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, com... 40 8.6
24gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 8.6
25gb|AC149351.2| Phakopsora pachyrhizi clone JGIAFNA-33E19, comple... 40 8.6
26emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chro... 40 8.6

>ref|XM_466490.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score =  168 bits (85), Expect = 1e-38
 Identities = 199/237 (83%)
 Strand = Plus / Plus

                                                                        
Query: 12   acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71
            |||| |||||| | ||||||||||  || |||||||||| ||||||||||||||| ||||
Sbjct: 1019 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 1078

                                                                        
Query: 72   atcatgctcatatggtcagccaaattttggagcaatcgagatagattggaatgcagttcc 131
            ||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 1079 atcatgcacatatggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcc 1138

                                                                        
Query: 132  ttcatgggttaaaattgaactaagagatttacagggcaattcggttgatggtgtggagtt 191
            | |   | ||||| | |||||||||||| || |||| || || |||| ||||||||||||
Sbjct: 1139 tccccagattaaactcgaactaagagatgtagagggaaactctgttggtggtgtggagtt 1198

                                                                     
Query: 192  ccctatatttgagctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248
             ||||||| ||| ||| | |||||||| || ||||| |  | |||| ||||||||||
Sbjct: 1199 tcctatatctgaactggatccatcaaaagcacatgccattacaaaacaagggcattc 1255



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>dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E07, full
            insert sequence
          Length = 1764

 Score =  168 bits (85), Expect = 1e-38
 Identities = 199/237 (83%)
 Strand = Plus / Plus

                                                                        
Query: 12   acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71
            |||| |||||| | ||||||||||  || |||||||||| ||||||||||||||| ||||
Sbjct: 1015 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 1074

                                                                        
Query: 72   atcatgctcatatggtcagccaaattttggagcaatcgagatagattggaatgcagttcc 131
            ||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 1075 atcatgcacatatggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcc 1134

                                                                        
Query: 132  ttcatgggttaaaattgaactaagagatttacagggcaattcggttgatggtgtggagtt 191
            | |   | ||||| | |||||||||||| || |||| || || |||| ||||||||||||
Sbjct: 1135 tccccagattaaactcgaactaagagatgtagagggaaactctgttggtggtgtggagtt 1194

                                                                     
Query: 192  ccctatatttgagctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248
             ||||||| ||| ||| | |||||||| || ||||| |  | |||| ||||||||||
Sbjct: 1195 tcctatatctgaactggatccatcaaaagcacatgccattacaaaacaagggcattc 1251



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 135/164 (82%)
 Strand = Plus / Minus

                                                                            
Query: 85       ggtcagccaaattttggagcaatcgagatagattggaatgcagttccttcatgggttaaa 144
                ||||| ||||| |||||||||||||| ||||||||||||||||| ||| |   | |||||
Sbjct: 22931390 ggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcctccccagattaaa 22931331

                                                                            
Query: 145      attgaactaagagatttacagggcaattcggttgatggtgtggagttccctatatttgag 204
                 | |||||||||||| || |||| || || |||| |||||||||||| ||||||| ||| 
Sbjct: 22931330 ctcgaactaagagatgtagagggaaactctgttggtggtgtggagtttcctatatctgaa 22931271

                                                            
Query: 205      ctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248
                ||| | |||||||| || ||||| |  | |||| ||||||||||
Sbjct: 22931270 ctggatccatcaaaagcacatgccattacaaaacaagggcattc 22931227



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                            
Query: 12       acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71
                |||| |||||| | ||||||||||  || |||||||||| ||||||||||||||| ||||
Sbjct: 22931619 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 22931560

                                
Query: 72       atcatgctcatatggt 87
                ||||||| ||||||||
Sbjct: 22931559 atcatgcacatatggt 22931544



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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 135/164 (82%)
 Strand = Plus / Minus

                                                                         
Query: 85    ggtcagccaaattttggagcaatcgagatagattggaatgcagttccttcatgggttaaa 144
             ||||| ||||| |||||||||||||| ||||||||||||||||| ||| |   | |||||
Sbjct: 51192 ggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcctccccagattaaa 51133

                                                                         
Query: 145   attgaactaagagatttacagggcaattcggttgatggtgtggagttccctatatttgag 204
              | |||||||||||| || |||| || || |||| |||||||||||| ||||||| ||| 
Sbjct: 51132 ctcgaactaagagatgtagagggaaactctgttggtggtgtggagtttcctatatctgaa 51073

                                                         
Query: 205   ctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248
             ||| | |||||||| || ||||| |  | |||| ||||||||||
Sbjct: 51072 ctggatccatcaaaagcacatgccattacaaaacaagggcattc 51029



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 12    acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71
             |||| |||||| | ||||||||||  || |||||||||| ||||||||||||||| ||||
Sbjct: 51421 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 51362

                             
Query: 72    atcatgctcatatggt 87
             ||||||| ||||||||
Sbjct: 51361 atcatgcacatatggt 51346



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>ref|NM_123602.2| Arabidopsis thaliana unknown protein AT5G42370 mRNA, complete cds
          Length = 1796

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 93   aaattttggagcaatcgagatagattggaatgca 126
            |||||||||||||||   ||||||||||||||||
Sbjct: 1276 aaattttggagcaatatcgatagattggaatgca 1309



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>gb|AY142485.1| Arabidopsis thaliana unknown protein (At5g42370) mRNA, complete cds
          Length = 1375

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 93   aaattttggagcaatcgagatagattggaatgca 126
            |||||||||||||||   ||||||||||||||||
Sbjct: 1014 aaattttggagcaatatcgatagattggaatgca 1047



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>gb|AF360310.1| Arabidopsis thaliana unknown protein (At5g42370) mRNA, complete cds
          Length = 1818

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 93   aaattttggagcaatcgagatagattggaatgca 126
            |||||||||||||||   ||||||||||||||||
Sbjct: 1276 aaattttggagcaatatcgatagattggaatgca 1309



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>emb|BX830017.1|CNS0A18Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB53ZD08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1562

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 93   aaattttggagcaatcgagatagattggaatgca 126
            |||||||||||||||   ||||||||||||||||
Sbjct: 1081 aaattttggagcaatatcgatagattggaatgca 1114



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>dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9
          Length = 85791

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 93    aaattttggagcaatcgagatagattggaatgca 126
             |||||||||||||||   ||||||||||||||||
Sbjct: 18528 aaattttggagcaatatcgatagattggaatgca 18495



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>ref|XM_718051.1| Candida albicans SC5314 putative transmembrane protein (CaO19_5932),
            mRNA
          Length = 2598

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 320  ttggcaccattgccgtttttg 340
            |||||||||||||||||||||
Sbjct: 2272 ttggcaccattgccgtttttg 2292



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>ref|XM_717904.1| Candida albicans SC5314 putative transmembrane protein (CaO19_13353),
            mRNA
          Length = 2598

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 320  ttggcaccattgccgtttttg 340
            |||||||||||||||||||||
Sbjct: 2272 ttggcaccattgccgtttttg 2292



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>gb|AC149367.2| Phakopsora pachyrhizi clone JGIAFNA-53G15, complete sequence
          Length = 37899

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   accaggtgagcagggatgtt 509
             ||||||||||||||||||||
Sbjct: 11277 accaggtgagcagggatgtt 11258



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>gb|AC149397.2| Phakopsora pachyrhizi clone JGIAFNA-61H13, complete sequence
          Length = 35492

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   accaggtgagcagggatgtt 509
             ||||||||||||||||||||
Sbjct: 20356 accaggtgagcagggatgtt 20337



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>gb|AC004643.1| Homo sapiens chromosome 16, cosmid clone 363E3 (LANL), complete
            sequence
          Length = 43411

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 429  agaggacaagggaagggagt 448
            ||||||||||||||||||||
Sbjct: 5591 agaggacaagggaagggagt 5610



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>gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome 7, complete sequence
          Length = 210291

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tgagctgaagccatcaaatg 220
             ||||||||||||||||||||
Sbjct: 10282 tgagctgaagccatcaaatg 10263



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>emb|BX890590.11| Zebrafish DNA sequence from clone DKEY-15H19 in linkage group 3,
             complete sequence
          Length = 141661

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 183   tgtggagttccctatatttgagctgaag 210
             |||||| ||||||||||| |||||||||
Sbjct: 52579 tgtggatttccctatattggagctgaag 52552



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>gb|AC135081.3| Mus musculus BAC clone RP24-131A24 from chromosome 7, complete sequence
          Length = 163138

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   tgagctgaagccatcaaatg 220
             ||||||||||||||||||||
Sbjct: 90826 tgagctgaagccatcaaatg 90845



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>emb|Z19153.1|CEC38C10 Caenorhabditis elegans Cosmid C38C10, complete sequence
          Length = 34193

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   agtgttgtgaaaactgaatt 481
             ||||||||||||||||||||
Sbjct: 12951 agtgttgtgaaaactgaatt 12932



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>emb|AL844525.1| Human DNA sequence from clone RP11-158M19 on chromosome X, complete
             sequence
          Length = 114428

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   aaaaagaagggcattctttt 252
             ||||||||||||||||||||
Sbjct: 62670 aaaaagaagggcattctttt 62689



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>gb|AC175377.3| Mus musculus chromosome 5, clone wi1-1993I8, complete sequence
          Length = 38230

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 436   aagggaagggagttttcgatcaga 459
             |||||||| |||||||||||||||
Sbjct: 21496 aagggaagagagttttcgatcaga 21473



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>gb|AY114512.1| Mus musculus NSK2 (Nsk2) gene, promoter region, exon 1 and partial
            cds
          Length = 2696

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  agctactaaaatgttcacta 397
            ||||||||||||||||||||
Sbjct: 2291 agctactaaaatgttcacta 2272



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>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence
          Length = 191041

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 577   tgtgacgaagctgtgatgag 596
             ||||||||||||||||||||
Sbjct: 97675 tgtgacgaagctgtgatgag 97656



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>gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, complete sequence
          Length = 180354

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   agaggacaagggaagggagt 448
             ||||||||||||||||||||
Sbjct: 46678 agaggacaagggaagggagt 46659



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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     cggttgatggtgtggagttc 192
               ||||||||||||||||||||
Sbjct: 2188240 cggttgatggtgtggagttc 2188221



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>gb|AC149351.2| Phakopsora pachyrhizi clone JGIAFNA-33E19, complete sequence
          Length = 35432

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   accaggtgagcagggatgtt 509
             ||||||||||||||||||||
Sbjct: 23845 accaggtgagcagggatgtt 23864



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>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete
              sequence
          Length = 252953

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    agctactaaaatgttcacta 397
              ||||||||||||||||||||
Sbjct: 207116 agctactaaaatgttcacta 207097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,752,159
Number of Sequences: 3902068
Number of extensions: 5752159
Number of successful extensions: 102071
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101986
Number of HSP's gapped (non-prelim): 81
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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