| Clone Name | bags1p20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466490.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1768 Score = 168 bits (85), Expect = 1e-38 Identities = 199/237 (83%) Strand = Plus / Plus Query: 12 acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71 |||| |||||| | |||||||||| || |||||||||| ||||||||||||||| |||| Sbjct: 1019 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 1078 Query: 72 atcatgctcatatggtcagccaaattttggagcaatcgagatagattggaatgcagttcc 131 ||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| || Sbjct: 1079 atcatgcacatatggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcc 1138 Query: 132 ttcatgggttaaaattgaactaagagatttacagggcaattcggttgatggtgtggagtt 191 | | | ||||| | |||||||||||| || |||| || || |||| |||||||||||| Sbjct: 1139 tccccagattaaactcgaactaagagatgtagagggaaactctgttggtggtgtggagtt 1198 Query: 192 ccctatatttgagctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248 ||||||| ||| ||| | |||||||| || ||||| | | |||| |||||||||| Sbjct: 1199 tcctatatctgaactggatccatcaaaagcacatgccattacaaaacaagggcattc 1255
>dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E07, full insert sequence Length = 1764 Score = 168 bits (85), Expect = 1e-38 Identities = 199/237 (83%) Strand = Plus / Plus Query: 12 acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71 |||| |||||| | |||||||||| || |||||||||| ||||||||||||||| |||| Sbjct: 1015 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 1074 Query: 72 atcatgctcatatggtcagccaaattttggagcaatcgagatagattggaatgcagttcc 131 ||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| || Sbjct: 1075 atcatgcacatatggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcc 1134 Query: 132 ttcatgggttaaaattgaactaagagatttacagggcaattcggttgatggtgtggagtt 191 | | | ||||| | |||||||||||| || |||| || || |||| |||||||||||| Sbjct: 1135 tccccagattaaactcgaactaagagatgtagagggaaactctgttggtggtgtggagtt 1194 Query: 192 ccctatatttgagctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248 ||||||| ||| ||| | |||||||| || ||||| | | |||| |||||||||| Sbjct: 1195 tcctatatctgaactggatccatcaaaagcacatgccattacaaaacaagggcattc 1251
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 95.6 bits (48), Expect = 2e-16 Identities = 135/164 (82%) Strand = Plus / Minus Query: 85 ggtcagccaaattttggagcaatcgagatagattggaatgcagttccttcatgggttaaa 144 ||||| ||||| |||||||||||||| ||||||||||||||||| ||| | | ||||| Sbjct: 22931390 ggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcctccccagattaaa 22931331 Query: 145 attgaactaagagatttacagggcaattcggttgatggtgtggagttccctatatttgag 204 | |||||||||||| || |||| || || |||| |||||||||||| ||||||| ||| Sbjct: 22931330 ctcgaactaagagatgtagagggaaactctgttggtggtgtggagtttcctatatctgaa 22931271 Query: 205 ctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248 ||| | |||||||| || ||||| | | |||| |||||||||| Sbjct: 22931270 ctggatccatcaaaagcacatgccattacaaaacaagggcattc 22931227 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 12 acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71 |||| |||||| | |||||||||| || |||||||||| ||||||||||||||| |||| Sbjct: 22931619 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 22931560 Query: 72 atcatgctcatatggt 87 ||||||| |||||||| Sbjct: 22931559 atcatgcacatatggt 22931544
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 95.6 bits (48), Expect = 2e-16 Identities = 135/164 (82%) Strand = Plus / Minus Query: 85 ggtcagccaaattttggagcaatcgagatagattggaatgcagttccttcatgggttaaa 144 ||||| ||||| |||||||||||||| ||||||||||||||||| ||| | | ||||| Sbjct: 51192 ggtcaaccaaactttggagcaatcgaaatagattggaatgcagtgcctccccagattaaa 51133 Query: 145 attgaactaagagatttacagggcaattcggttgatggtgtggagttccctatatttgag 204 | |||||||||||| || |||| || || |||| |||||||||||| ||||||| ||| Sbjct: 51132 ctcgaactaagagatgtagagggaaactctgttggtggtgtggagtttcctatatctgaa 51073 Query: 205 ctgaagccatcaaatgcgcatgcaaacaaaaaagaagggcattc 248 ||| | |||||||| || ||||| | | |||| |||||||||| Sbjct: 51072 ctggatccatcaaaagcacatgccattacaaaacaagggcattc 51029 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 12 acttctggcttggctgacaccaacccccatgcgagtcttcagccctaactgtcgtcacaa 71 |||| |||||| | |||||||||| || |||||||||| ||||||||||||||| |||| Sbjct: 51421 acttgtggctttgttgacaccaactaccttgcgagtctttagccctaactgtcgttacaa 51362 Query: 72 atcatgctcatatggt 87 ||||||| |||||||| Sbjct: 51361 atcatgcacatatggt 51346
>ref|NM_123602.2| Arabidopsis thaliana unknown protein AT5G42370 mRNA, complete cds Length = 1796 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 aaattttggagcaatcgagatagattggaatgca 126 ||||||||||||||| |||||||||||||||| Sbjct: 1276 aaattttggagcaatatcgatagattggaatgca 1309
>gb|AY142485.1| Arabidopsis thaliana unknown protein (At5g42370) mRNA, complete cds Length = 1375 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 aaattttggagcaatcgagatagattggaatgca 126 ||||||||||||||| |||||||||||||||| Sbjct: 1014 aaattttggagcaatatcgatagattggaatgca 1047
>gb|AF360310.1| Arabidopsis thaliana unknown protein (At5g42370) mRNA, complete cds Length = 1818 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 aaattttggagcaatcgagatagattggaatgca 126 ||||||||||||||| |||||||||||||||| Sbjct: 1276 aaattttggagcaatatcgatagattggaatgca 1309
>emb|BX830017.1|CNS0A18Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB53ZD08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1562 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 93 aaattttggagcaatcgagatagattggaatgca 126 ||||||||||||||| |||||||||||||||| Sbjct: 1081 aaattttggagcaatatcgatagattggaatgca 1114
>dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9 Length = 85791 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 93 aaattttggagcaatcgagatagattggaatgca 126 ||||||||||||||| |||||||||||||||| Sbjct: 18528 aaattttggagcaatatcgatagattggaatgca 18495
>ref|XM_718051.1| Candida albicans SC5314 putative transmembrane protein (CaO19_5932), mRNA Length = 2598 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ttggcaccattgccgtttttg 340 ||||||||||||||||||||| Sbjct: 2272 ttggcaccattgccgtttttg 2292
>ref|XM_717904.1| Candida albicans SC5314 putative transmembrane protein (CaO19_13353), mRNA Length = 2598 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ttggcaccattgccgtttttg 340 ||||||||||||||||||||| Sbjct: 2272 ttggcaccattgccgtttttg 2292
>gb|AC149367.2| Phakopsora pachyrhizi clone JGIAFNA-53G15, complete sequence Length = 37899 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 accaggtgagcagggatgtt 509 |||||||||||||||||||| Sbjct: 11277 accaggtgagcagggatgtt 11258
>gb|AC149397.2| Phakopsora pachyrhizi clone JGIAFNA-61H13, complete sequence Length = 35492 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 accaggtgagcagggatgtt 509 |||||||||||||||||||| Sbjct: 20356 accaggtgagcagggatgtt 20337
>gb|AC004643.1| Homo sapiens chromosome 16, cosmid clone 363E3 (LANL), complete sequence Length = 43411 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 agaggacaagggaagggagt 448 |||||||||||||||||||| Sbjct: 5591 agaggacaagggaagggagt 5610
>gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome 7, complete sequence Length = 210291 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tgagctgaagccatcaaatg 220 |||||||||||||||||||| Sbjct: 10282 tgagctgaagccatcaaatg 10263
>emb|BX890590.11| Zebrafish DNA sequence from clone DKEY-15H19 in linkage group 3, complete sequence Length = 141661 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 183 tgtggagttccctatatttgagctgaag 210 |||||| ||||||||||| ||||||||| Sbjct: 52579 tgtggatttccctatattggagctgaag 52552
>gb|AC135081.3| Mus musculus BAC clone RP24-131A24 from chromosome 7, complete sequence Length = 163138 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tgagctgaagccatcaaatg 220 |||||||||||||||||||| Sbjct: 90826 tgagctgaagccatcaaatg 90845
>emb|Z19153.1|CEC38C10 Caenorhabditis elegans Cosmid C38C10, complete sequence Length = 34193 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 agtgttgtgaaaactgaatt 481 |||||||||||||||||||| Sbjct: 12951 agtgttgtgaaaactgaatt 12932
>emb|AL844525.1| Human DNA sequence from clone RP11-158M19 on chromosome X, complete sequence Length = 114428 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 aaaaagaagggcattctttt 252 |||||||||||||||||||| Sbjct: 62670 aaaaagaagggcattctttt 62689
>gb|AC175377.3| Mus musculus chromosome 5, clone wi1-1993I8, complete sequence Length = 38230 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 aagggaagggagttttcgatcaga 459 |||||||| ||||||||||||||| Sbjct: 21496 aagggaagagagttttcgatcaga 21473
>gb|AY114512.1| Mus musculus NSK2 (Nsk2) gene, promoter region, exon 1 and partial cds Length = 2696 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 agctactaaaatgttcacta 397 |||||||||||||||||||| Sbjct: 2291 agctactaaaatgttcacta 2272
>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence Length = 191041 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 tgtgacgaagctgtgatgag 596 |||||||||||||||||||| Sbjct: 97675 tgtgacgaagctgtgatgag 97656
>gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, complete sequence Length = 180354 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 agaggacaagggaagggagt 448 |||||||||||||||||||| Sbjct: 46678 agaggacaagggaagggagt 46659
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cggttgatggtgtggagttc 192 |||||||||||||||||||| Sbjct: 2188240 cggttgatggtgtggagttc 2188221
>gb|AC149351.2| Phakopsora pachyrhizi clone JGIAFNA-33E19, complete sequence Length = 35432 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 accaggtgagcagggatgtt 509 |||||||||||||||||||| Sbjct: 23845 accaggtgagcagggatgtt 23864
>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete sequence Length = 252953 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 agctactaaaatgttcacta 397 |||||||||||||||||||| Sbjct: 207116 agctactaaaatgttcacta 207097 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,752,159 Number of Sequences: 3902068 Number of extensions: 5752159 Number of successful extensions: 102071 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101986 Number of HSP's gapped (non-prelim): 81 length of query: 631 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 608 effective length of database: 17,143,297,704 effective search space: 10423125004032 effective search space used: 10423125004032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)