>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score =  153 bits (77), Expect = 6e-34
 Identities = 166/193 (86%), Gaps = 2/193 (1%)
 Strand = Plus / Plus

                                                                         
Query: 1     caatcggttcatgtgggtactatgtcaggcagaccgactcgaagctacttctgacactgc 60
             |||||| |||||||||| | |||||||||||||| ||  |||||||||||||||| ||||
Sbjct: 85024 caatcgcttcatgtggg-attatgtcaggcagacagatgcgaagctacttctgacgctgc 85082

                                                                         
Query: 61    ctctcaacctgccatcgattataatgacagcatgtactttctgtgcgggttttagggctg 120
             | |||||| |||| || ||||||||||||| |  ||||| ||||||||||  |||| |||
Sbjct: 85083 ccctcaacttgccgtcaattataatgacag-acatacttactgtgcgggtactaggactg 85141

                                                                         
Query: 121   ttgggagctatctattctctagcacagtacctgatatcaaggcggataagaattgctggg 180
             || || ||||| ||||||||| |||||||  | |||||||||||||||||| ||||||||
Sbjct: 85142 ttaggtgctatttattctctatcacagtatgttatatcaaggcggataagacttgctggg 85201

                          
Query: 181   atgaaatatattt 193
             |||||||| ||||
Sbjct: 85202 atgaaatacattt 85214

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  153 bits (77), Expect = 6e-34
 Identities = 166/193 (86%), Gaps = 2/193 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1        caatcggttcatgtgggtactatgtcaggcagaccgactcgaagctacttctgacactgc 60
                |||||| |||||||||| | |||||||||||||| ||  |||||||||||||||| ||||
Sbjct: 18505709 caatcgcttcatgtggg-attatgtcaggcagacagatgcgaagctacttctgacgctgc 18505767

                                                                            
Query: 61       ctctcaacctgccatcgattataatgacagcatgtactttctgtgcgggttttagggctg 120
                | |||||| |||| || ||||||||||||| |  ||||| ||||||||||  |||| |||
Sbjct: 18505768 ccctcaacttgccgtcaattataatgacag-acatacttactgtgcgggtactaggactg 18505826

                                                                            
Query: 121      ttgggagctatctattctctagcacagtacctgatatcaaggcggataagaattgctggg 180
                || || ||||| ||||||||| |||||||  | |||||||||||||||||| ||||||||
Sbjct: 18505827 ttaggtgctatttattctctatcacagtatgttatatcaaggcggataagacttgctggg 18505886

                             
Query: 181      atgaaatatattt 193
                |||||||| ||||
Sbjct: 18505887 atgaaatacattt 18505899

>dbj|AK071810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114H02, full
            insert sequence
          Length = 1843

 Score =  153 bits (77), Expect = 6e-34
 Identities = 166/193 (86%), Gaps = 2/193 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    caatcggttcatgtgggtactatgtcaggcagaccgactcgaagctacttctgacactgc 60
            |||||| |||||||||| | |||||||||||||| ||  |||||||||||||||| ||||
Sbjct: 844  caatcgcttcatgtggg-attatgtcaggcagacagatgcgaagctacttctgacgctgc 902

                                                                        
Query: 61   ctctcaacctgccatcgattataatgacagcatgtactttctgtgcgggttttagggctg 120
            | |||||| |||| || ||||||||||||| |  ||||| ||||||||||  |||| |||
Sbjct: 903  ccctcaacttgccgtcaattataatgacag-acatacttactgtgcgggtactaggactg 961

                                                                        
Query: 121  ttgggagctatctattctctagcacagtacctgatatcaaggcggataagaattgctggg 180
            || || ||||| ||||||||| |||||||  | |||||||||||||||||| ||||||||
Sbjct: 962  ttaggtgctatttattctctatcacagtatgttatatcaaggcggataagacttgctggg 1021

                         
Query: 181  atgaaatatattt 193
            |||||||| ||||
Sbjct: 1022 atgaaatacattt 1034

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  153 bits (77), Expect = 6e-34
 Identities = 166/193 (86%), Gaps = 2/193 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1        caatcggttcatgtgggtactatgtcaggcagaccgactcgaagctacttctgacactgc 60
                |||||| |||||||||| | |||||||||||||| ||  |||||||||||||||| ||||
Sbjct: 18665110 caatcgcttcatgtggg-attatgtcaggcagacagatgcgaagctacttctgacgctgc 18665168

                                                                            
Query: 61       ctctcaacctgccatcgattataatgacagcatgtactttctgtgcgggttttagggctg 120
                | |||||| |||| || ||||||||||||| |  ||||| ||||||||||  |||| |||
Sbjct: 18665169 ccctcaacttgccgtcaattataatgacag-acatacttactgtgcgggtactaggactg 18665227

                                                                            
Query: 121      ttgggagctatctattctctagcacagtacctgatatcaaggcggataagaattgctggg 180
                || || ||||| ||||||||| |||||||  | |||||||||||||||||| ||||||||
Sbjct: 18665228 ttaggtgctatttattctctatcacagtatgttatatcaaggcggataagacttgctggg 18665287

                             
Query: 181      atgaaatatattt 193
                |||||||| ||||
Sbjct: 18665288 atgaaatacattt 18665300

>gb|AY109979.1| Zea mays CL11737_1 mRNA sequence
          Length = 629

 Score =  109 bits (55), Expect = 9e-21
 Identities = 131/155 (84%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 42  aagctacttctgacactgcctctcaacctgccatcgattataatgacagcatgtactttc 101
           |||||||| ||||| || ||||||||| |||| |||||||||||||||| |  ||||| |
Sbjct: 500 aagctactgctgacgctacctctcaacttgccttcgattataatgacag-acatacttac 442

                                                                       
Query: 102 tgtgcgggttttagggctgttgggagctatctattctctagcacagtacctgatatcaag 161
           | | ||||| |||||  || | |||||||| || ||||| || |||||| ||||||||||
Sbjct: 441 tattcgggtgttaggattgctaggagctatgtactctcttgcccagtacatgatatcaag 382

                                              
Query: 162 gcggataagaattgctgggatgaaatatatttgaa 196
           ||| ||||||||||||||||||| ||| |||||||
Sbjct: 381 gcgtataagaattgctgggatgagatacatttgaa 347

>emb|BX663608.26| Zebrafish DNA sequence from clone DKEY-223I19 in linkage group 7,
             complete sequence
          Length = 190528

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 446   tcacttgactaattttaattc 466
             |||||||||||||||||||||
Sbjct: 76332 tcacttgactaattttaattc 76352

>emb|AL159168.15| Human DNA sequence from clone RP11-401H23 on chromosome 9 Contains a the
              3' end of a novel gene (KIAA0368),  the gene for KIAA1962
              protein similar to zinc finger protein HIT-10 and a CpG
              island, complete sequence
          Length = 129010

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 444    tttcacttgactaattttaat 464
              |||||||||||||||||||||
Sbjct: 103134 tttcacttgactaattttaat 103114

>gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165139

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   cttcaacttcctgaagcagat 264
             |||||||||||||||||||||
Sbjct: 50652 cttcaacttcctgaagcagat 50632

>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
             complete sequence
          Length = 86801

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 274   agagagaatcagagaaacaat 294
             |||||||||||||||||||||
Sbjct: 77354 agagagaatcagagaaacaat 77374

>gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152358

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 244    cttcaacttcctgaagcagat 264
              |||||||||||||||||||||
Sbjct: 139522 cttcaacttcctgaagcagat 139502

>dbj|AP000722.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675M1, complete
             sequence
          Length = 177882

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 368   tttgcacaggacataaaatgcatca 392
             |||||||||||||||| ||||||||
Sbjct: 87279 tttgcacaggacataagatgcatca 87255

>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence
          Length = 129417

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ctctagcacagtacctgata 156
             ||||||||||||||||||||
Sbjct: 90843 ctctagcacagtacctgata 90824

>gb|AC115867.12| Mus musculus chromosome 6, clone RP24-326P23, complete sequence
          Length = 162067

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    aggtgttgtactgtagatgt 367
              ||||||||||||||||||||
Sbjct: 123035 aggtgttgtactgtagatgt 123016

>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence
          Length = 148915

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ctctagcacagtacctgata 156
              ||||||||||||||||||||
Sbjct: 108644 ctctagcacagtacctgata 108625

>gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosome 15, complete sequence
          Length = 229480

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 184    aaatatatttgaagttttgaggaa 207
              ||||| ||||||||||||||||||
Sbjct: 128339 aaataaatttgaagttttgaggaa 128362

>gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome 6, complete sequence
          Length = 212096

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    aggtgttgtactgtagatgt 367
              ||||||||||||||||||||
Sbjct: 103996 aggtgttgtactgtagatgt 103977

>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
             complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   gttgtactgtagatgttttg 371
             ||||||||||||||||||||
Sbjct: 30040 gttgtactgtagatgttttg 30021

>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   agggctgttgggagctatct 133
             ||||||||||||||||||||
Sbjct: 66452 agggctgttgggagctatct 66471

>emb|BX322638.6| Zebrafish DNA sequence from clone DKEYP-114C5 in linkage group 11,
             complete sequence
          Length = 85185

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   aattgctatttttcacttga 453
             ||||||||||||||||||||
Sbjct: 70403 aattgctatttttcacttga 70422

>gb|AC112221.2| Homo sapiens chromosome 3 clone RP11-11C8, complete sequence
          Length = 151382

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    gaagctacttctgacactgc 60
             ||||||||||||||||||||
Sbjct: 75145 gaagctacttctgacactgc 75126

>gb|AC096737.3| Homo sapiens BAC clone RP11-178N2 from 4, complete sequence
          Length = 166192

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   cgaattgctatttttcactt 451
             ||||||||||||||||||||
Sbjct: 67768 cgaattgctatttttcactt 67787

>emb|AL954709.15| Zebrafish DNA sequence from clone CH211-142N21 in linkage group 7,
              complete sequence
          Length = 162309

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 172    attgctgggatgaaatatatttgaagtt 199
              |||||||  |||||||||||||||||||
Sbjct: 117217 attgctgtaatgaaatatatttgaagtt 117244

>gb|AC074315.79| Mus musculus strain C57BL/6J clone rp23-445c23 map 15, complete
             sequence
          Length = 177864

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   cacttttgtactggatgatc 327
             ||||||||||||||||||||
Sbjct: 69157 cacttttgtactggatgatc 69138


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,340,000
Number of Sequences: 3902068
Number of extensions: 4340000
Number of successful extensions: 82367
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82268
Number of HSP's gapped (non-prelim): 94
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)