ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags1o07 |
|---|---|
| Clone Library Name | barley_pub |
>TRAC9_MAIZE (P03010) Putative AC9 transposase| Length = 839 Score = 122 bits (305), Expect = 1e-27 Identities = 63/204 (30%), Positives = 109/204 (53%) Frame = +3 Query: 3 PLHIVQQPAFTAFIDSLQPRFRVADVDAMEVEVYAVYQKEKENLLQAFSTMPGRISLTIG 182 P +IV+ F F+ SL+P F + + +Y +EKE L + R S T+ Sbjct: 187 PFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMD 246 Query: 183 LWTTSQTLGYVSVSGQFIDSEWKLHRRMLSFMMVSSPHSENALSEAISSSLTDWSMKEKL 362 +WT+ Q Y+ V+ +ID +W L +R++ F V H+ LS+ ++ + W++++KL Sbjct: 247 MWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKL 306 Query: 363 FTITLDNDCSSHDIYSANLRDYLSSKNNHMLKGQLFVVRCYAHILNAVAEDVIALIHGVI 542 F ++LDN ++ + D + +N + G F VRC HILN VA+D +A+I G I Sbjct: 307 FALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTI 366 Query: 543 YSIRESIKFIKASPSREEKFAEIA 614 I+ + +K+SP + E+ + A Sbjct: 367 EKIKAIVLAVKSSPLQWEELMKCA 390
>TRA1_MAIZE (P08770) Putative AC transposase (ORFA)| Length = 806 Score = 122 bits (305), Expect = 1e-27 Identities = 63/204 (30%), Positives = 109/204 (53%) Frame = +3 Query: 3 PLHIVQQPAFTAFIDSLQPRFRVADVDAMEVEVYAVYQKEKENLLQAFSTMPGRISLTIG 182 P +IV+ F F+ SL+P F + + +Y +EKE L + R S T+ Sbjct: 241 PFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMD 300 Query: 183 LWTTSQTLGYVSVSGQFIDSEWKLHRRMLSFMMVSSPHSENALSEAISSSLTDWSMKEKL 362 +WT+ Q Y+ V+ +ID +W L +R++ F V H+ LS+ ++ + W++++KL Sbjct: 301 MWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKL 360 Query: 363 FTITLDNDCSSHDIYSANLRDYLSSKNNHMLKGQLFVVRCYAHILNAVAEDVIALIHGVI 542 F ++LDN ++ + D + +N + G F VRC HILN VA+D +A+I G I Sbjct: 361 FALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTI 420 Query: 543 YSIRESIKFIKASPSREEKFAEIA 614 I+ + +K+SP + E+ + A Sbjct: 421 EKIKAIVLAVKSSPLQWEELMKCA 444
>ZBED4_HUMAN (O75132) Zinc finger BED domain-containing protein 4| Length = 1171 Score = 42.0 bits (97), Expect = 0.001 Identities = 42/219 (19%), Positives = 88/219 (40%), Gaps = 16/219 (7%) Frame = +3 Query: 3 PLHIVQQPAFTAFIDSLQPRFRV-ADVDAMEVEVYAVYQKEKENLLQAFSTMP-GRISLT 176 P V F ++ L+P++ + A + +Y K+ ++ G I T Sbjct: 672 PYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTAIPGMYDNVKQIIMSHLKEAESGVIHFT 731 Query: 177 IGLWTTSQTLGYVSVSGQFIDSEWKLHRR--------MLSFMMVSSPHSENALSEAISSS 332 G+W ++QT Y++++ ++ E R +L V +S N++ + + Sbjct: 732 SGIWMSNQTREYLTLTAHWVSFESPARPRCDDHHCSALLDVSQVDCDYSGNSIQKQLECW 791 Query: 333 LTDWSMKEKL---FTITLDNDCSSHDIYSANLRDYLSSKNNHMLKGQLFVVRCYAHILNA 503 W L T+T DN +S + +G+ V+C++H +N Sbjct: 792 WEAWVTSTGLQVGITVT-DN----------------ASIGKTLNEGEHSSVQCFSHTVNL 834 Query: 504 VAEDVI---ALIHGVIYSIRESIKFIKASPSREEKFAEI 611 + + I ++ ++ R+ + + SP +EK AE+ Sbjct: 835 IVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAEL 873
>HAT1_ASHGO (Q750F5) Histone acetyltransferase type B catalytic subunit (EC| 2.3.1.48) Length = 391 Score = 32.7 bits (73), Expect = 0.89 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Frame = +3 Query: 105 AVYQKEKENLLQAFSTMPGRISLTIGLWTTSQTLGYVSVSGQFIDSEWKLHRRM-LSFMM 281 A Y E ++ F T IG TT + Y++ GQ DS K +R +S + Sbjct: 163 ASYIDEDDSAWDIFMTFNTSTRQCIGYTTTYKHWRYIN--GQEFDSSEKTTKRAKISQFI 220 Query: 282 VSSPH-SENALSEAISSSLTDWSMKEKLFTITLDNDCSSHDIYSANLRD 425 + P+ S++ S S+++ WS +EK+ +T+++ + D +LRD Sbjct: 221 IFPPYQSKSHGSHLYSAAIDVWSKEEKISEVTVEDPNEAFD----DLRD 265
>KRA57_HUMAN (Q6L8G8) Keratin-associated protein 5-7 (Keratin-associated protein| 5.7) (Ultrahigh sulfur keratin-associated protein 5.7) (Keratin-associated protein 5-3) (Keratin-associated protein 5.3) Length = 165 Score = 26.2 bits (56), Expect(2) = 1.9 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%) Frame = +2 Query: 461 PAICCE-VLCPYPECSCRRC 517 P CC+ V C P CSC C Sbjct: 38 PVCCCKPVCCCVPACSCSSC 57 Score = 24.3 bits (51), Expect(2) = 1.9 Identities = 6/13 (46%), Positives = 8/13 (61%) Frame = +2 Query: 500 CSCRRCHCFNPRC 538 C C +C C+ P C Sbjct: 90 CGCSQCSCYKPCC 102
>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein| 5.8) (Ultrahigh sulfur keratin-associated protein 5.8) (Keratin, ultra high-sulfur matrix protein B) (UHS keratin B) (UHS KerB) Length = 187 Score = 25.8 bits (55), Expect(2) = 2.3 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%) Frame = +2 Query: 461 PAICCE-VLCPYPECSCRRC 517 P CC+ V C P CSC C Sbjct: 31 PICCCKPVCCCVPACSCSSC 50 Score = 24.3 bits (51), Expect(2) = 2.3 Identities = 6/13 (46%), Positives = 8/13 (61%) Frame = +2 Query: 500 CSCRRCHCFNPRC 538 C C +C C+ P C Sbjct: 83 CGCSQCSCYKPCC 95
>Y370_MYCPN (P75411) Very hypothetical adhesin P1-like protein MPN370| (A19_orf737V) Length = 737 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = +3 Query: 168 SLTIGLWTTSQTLGYVSVSGQFIDSEWKLHRRMLSFMMVSSPHSENAL--SEAISSSLTD 341 SLT+ +WTT+ ++V G F + L R+ S+ + E AL + AI+ LT Sbjct: 606 SLTLFIWTTASLATGLTVVGHFTSTTTTLKRQQFSY----TRPDEVALRHTNAINPRLTP 661 Query: 342 WSMKEKLFT 368 W+ + F+ Sbjct: 662 WTYRNTSFS 670
>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein| 5.9) (Ultrahigh sulfur keratin-associated protein 5.9) (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra high-sulfur matrix protein A) (UHS keratin A) (UHS KerA) Length = 169 Score = 26.9 bits (58), Expect(2) = 3.9 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%) Frame = +2 Query: 446 PHA*GPAICCE-VLCPYPECSCRRC 517 P P CC+ V C P CSC C Sbjct: 33 PSCCAPVYCCKPVCCCVPACSCSSC 57 Score = 22.3 bits (46), Expect(2) = 3.9 Identities = 6/13 (46%), Positives = 7/13 (53%) Frame = +2 Query: 500 CSCRRCHCFNPRC 538 C C +C C P C Sbjct: 75 CGCSQCSCCKPCC 87
>KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-associated| protein 4.15) (Ultrahigh sulfur keratin-associated protein 4.15) (Fragment) Length = 193 Score = 30.0 bits (66), Expect = 5.8 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 470 CCEVLCPYPECSCRRCHCFNPRC 538 CCE C P C CR C C P C Sbjct: 142 CCESSCCRP-CCCRPCCCLRPVC 163
>KRA47_HUMAN (Q9BYR0) Keratin-associated protein 4-7 (Keratin-associated protein| 4.7) (Ultrahigh sulfur keratin-associated protein 4.7) Length = 210 Score = 30.0 bits (66), Expect = 5.8 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +2 Query: 470 CCEVLCPYPECSCRRCHCFNPRC 538 CCE C P C CR C C P C Sbjct: 159 CCESSCCRP-CCCRPCCCLRPVC 180
>VRPP_LAMBD (P03689) Replication protein P| Length = 233 Score = 29.6 bits (65), Expect = 7.6 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +2 Query: 119 RKREPFASIQHHAWKDQPHYWIVDN 193 RKR + + + WK HYW+V N Sbjct: 135 RKRGLYPDAESYPWKSNAHYWLVTN 159
>KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-associated protein| 4.9) (Ultrahigh sulfur keratin-associated protein 4.9) (Fragment) Length = 191 Score = 29.6 bits (65), Expect = 7.6 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%) Frame = +2 Query: 464 AICCEVLCPYPEC---SCRRCHCFNPRC 538 ++CC+ C P C +C R C+ P C Sbjct: 38 SVCCQPTCSRPSCCQTTCCRTTCYRPSC 65
>YEIT_SALTY (Q8ZNL8) Hypothetical oxidoreductase yeiT| Length = 413 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +1 Query: 103 MLFIRKKKRTFCKHSAPCLEGSASLLDCGQLVKLLAMFQFLGSSLTLNGN 252 +L I++ R H APC + + D G+ ++ + F G++ T+ N Sbjct: 17 LLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIREN 66
>YEIT_SALTI (Q8Z5A6) Hypothetical oxidoreductase yeiT| Length = 413 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +1 Query: 103 MLFIRKKKRTFCKHSAPCLEGSASLLDCGQLVKLLAMFQFLGSSLTLNGN 252 +L I++ R H APC + + D G+ ++ + F G++ T+ N Sbjct: 17 LLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIREN 66
>Y4FR_RHISN (P55456) Hypothetical 60.5 kDa protein y4fR| Length = 546 Score = 29.3 bits (64), Expect = 9.9 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 11/126 (8%) Frame = +3 Query: 75 DVDAMEVEVYAVYQKEKENLLQAFSTMPGRISLTIGLWTTSQTLGYVSV--------SGQ 230 D D E+EVY YQ + + L+ P L + T S G+ Sbjct: 400 DADIDEIEVYLAYQTQLRDTLELRHVAPDMRFLNVSHVTEEDVARAASSVRELEARGFGE 459 Query: 231 FIDSEWKLHRRMLSFMMVSSPHSENALSEAISSSLTD---WSMKEKLFTITLDNDCSSHD 401 ++ + W+ R+ M +P S A+ E + ++ + + EKL L D + Sbjct: 460 YVATRWQPWERV---MRRIAPASHAAMQEQLIEAMGEEFRSRLDEKLAEHGLTGDADAER 516 Query: 402 IYSANL 419 ++ A + Sbjct: 517 VFGAEI 522
>YEIT_ECOLI (P76440) Hypothetical oxidoreductase yeiT| Length = 412 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +1 Query: 103 MLFIRKKKRTFCKHSAPCLEGSASLLDCGQLVKLLAMFQFLGSSLTLNGN 252 +L I++ R H APC + + D G+ ++ + F G++ T+ N Sbjct: 17 LLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIREN 66
>YEIT_ECO57 (Q8X645) Hypothetical oxidoreductase yeiT| Length = 412 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +1 Query: 103 MLFIRKKKRTFCKHSAPCLEGSASLLDCGQLVKLLAMFQFLGSSLTLNGN 252 +L I++ R H APC + + D G+ ++ + F G++ T+ N Sbjct: 17 LLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIREN 66
>KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-associated| protein 4.14) (Ultrahigh sulfur keratin-associated protein 4.14) Length = 195 Score = 29.3 bits (64), Expect = 9.9 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 14/39 (35%) Frame = +2 Query: 464 AICCEVLCPYPECS--------------CRRCHCFNPRC 538 ++CC+ C +P CS CR C C P C Sbjct: 127 SVCCQPTCCHPSCSISSCCRPSCCESSCCRPCCCLRPVC 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,856,264 Number of Sequences: 219361 Number of extensions: 1437088 Number of successful extensions: 3955 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3713 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3948 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
