| Clone Name | bags1n21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093C11, full insert sequence Length = 1425 Score = 119 bits (60), Expect = 4e-24 Identities = 116/136 (85%) Strand = Plus / Plus Query: 1 gtttactaangcncgctacctatacgacagctcgtcttggatccttcagggttttgacaa 60 ||||||||| || || || ||||| || |||||||||||||||||||||||| |||||| Sbjct: 446 gtttactaaggcaggcgacatatactactgctcgtcttggatccttcagggttctgacaa 505 Query: 61 acaaagcaattgaggcaaatgatggnaggccattgccgcttgttcanaaagcttttattg 120 ||||||||||||| |||||||| | ||||||||| | ||||| ||||||||||||| Sbjct: 506 acaaagcaattgaaaagaatgatggaaagccattgcctttagttcagaaagcttttattg 565 Query: 121 gtctaactgctggagc 136 | || ||||||||||| Sbjct: 566 gccttactgctggagc 581
>dbj|AK059612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F09, full insert sequence Length = 1359 Score = 119 bits (60), Expect = 4e-24 Identities = 116/136 (85%) Strand = Plus / Plus Query: 1 gtttactaangcncgctacctatacgacagctcgtcttggatccttcagggttttgacaa 60 ||||||||| || || || ||||| || |||||||||||||||||||||||| |||||| Sbjct: 372 gtttactaaggcaggcgacatatactactgctcgtcttggatccttcagggttctgacaa 431 Query: 61 acaaagcaattgaggcaaatgatggnaggccattgccgcttgttcanaaagcttttattg 120 ||||||||||||| |||||||| | ||||||||| | ||||| ||||||||||||| Sbjct: 432 acaaagcaattgaaaagaatgatggaaagccattgcctttagttcagaaagcttttattg 491 Query: 121 gtctaactgctggagc 136 | || ||||||||||| Sbjct: 492 gccttactgctggagc 507
>gb|BT016707.1| Zea mays clone Contig540 mRNA sequence Length = 634 Score = 85.7 bits (43), Expect = 6e-14 Identities = 95/113 (84%) Strand = Plus / Plus Query: 24 acgacagctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgat 83 ||||| ||||||||||||||||| |||||| | || ||||||||| |||| ||||| Sbjct: 377 acgactgctcgtcttggatcctttagggttctaactaacaaagcagttgaaaagaatgaa 436 Query: 84 ggnaggccattgccgcttgttcanaaagcttttattggtctaactgctggagc 136 || | ||||||||| || |||| ||||||||||||||||| ||||||||||| Sbjct: 437 gggaagccattgcctctaattcagaaagcttttattggtctgactgctggagc 489
>gb|AY644469.1| Saccharum officinarum mitochondrial 2-oxoglutarate/malate translocator mRNA, complete cds; nuclear gene for mitochondrial product Length = 1416 Score = 85.7 bits (43), Expect = 6e-14 Identities = 95/113 (84%) Strand = Plus / Plus Query: 24 acgacagctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgat 83 ||||| |||||||||||||||||||||||| | || ||||||||| |||| ||||| Sbjct: 433 acgactgctcgtcttggatccttcagggttctaactaacaaagcagttgaaaagaatgaa 492 Query: 84 ggnaggccattgccgcttgttcanaaagcttttattggtctaactgctggagc 136 || | ||| ||||| || |||| ||||||||||||||||| ||||||||||| Sbjct: 493 gggaagccgttgcctctaattcagaaagcttttattggtctgactgctggagc 545
>dbj|D45073.1|PNI2OMTA Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 1446 Score = 85.7 bits (43), Expect = 6e-14 Identities = 95/113 (84%) Strand = Plus / Plus Query: 24 acgacagctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgat 83 ||||| |||||||||||||||||||||||| | ||||| |||||| |||| |||||||| Sbjct: 385 acgactgctcgtcttggatccttcagggttctaacaaataaagcagttgaagcaaatgag 444 Query: 84 ggnaggccattgccgcttgttcanaaagcttttattggtctaactgctggagc 136 || | |||| | || || | || |||||| |||||||||| ||||||||||| Sbjct: 445 ggaaagccactacctctactgcaaaaagctgttattggtctcactgctggagc 497
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02, complete sequence Length = 75456 Score = 83.8 bits (42), Expect = 2e-13 Identities = 79/92 (85%) Strand = Plus / Plus Query: 45 ttcagggttttgacaaacaaagcaattgaggcaaatgatggnaggccattgccgcttgtt 104 ||||||||| ||||||||||||||||||| |||||||| | ||||||||| | ||| Sbjct: 52324 ttcagggttctgacaaacaaagcaattgaaaagaatgatggaaagccattgcctttagtt 52383 Query: 105 canaaagcttttattggtctaactgctggagc 136 || |||||||||||||| || ||||||||||| Sbjct: 52384 cagaaagcttttattggccttactgctggagc 52415 Score = 48.1 bits (24), Expect = 0.012 Identities = 43/50 (86%) Strand = Plus / Plus Query: 1 gtttactaangcncgctacctatacgacagctcgtcttggatccttcagg 50 ||||||||| || || || ||||| || ||||||||||||||||||||| Sbjct: 51102 gtttactaaggcaggcgacatatactactgctcgtcttggatccttcagg 51151
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 83.8 bits (42), Expect = 2e-13 Identities = 79/92 (85%) Strand = Plus / Plus Query: 45 ttcagggttttgacaaacaaagcaattgaggcaaatgatggnaggccattgccgcttgtt 104 ||||||||| ||||||||||||||||||| |||||||| | ||||||||| | ||| Sbjct: 6614270 ttcagggttctgacaaacaaagcaattgaaaagaatgatggaaagccattgcctttagtt 6614329 Query: 105 canaaagcttttattggtctaactgctggagc 136 || |||||||||||||| || ||||||||||| Sbjct: 6614330 cagaaagcttttattggccttactgctggagc 6614361 Score = 48.1 bits (24), Expect = 0.012 Identities = 43/50 (86%) Strand = Plus / Plus Query: 1 gtttactaangcncgctacctatacgacagctcgtcttggatccttcagg 50 ||||||||| || || || ||||| || ||||||||||||||||||||| Sbjct: 6613048 gtttactaaggcaggcgacatatactactgctcgtcttggatccttcagg 6613097
>gb|BT016861.1| Zea mays clone Contig694 mRNA sequence Length = 1412 Score = 79.8 bits (40), Expect = 4e-12 Identities = 92/110 (83%) Strand = Plus / Minus Query: 24 acgacagctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgat 83 ||||| ||||||||||||||||| |||||| | || ||||||||| |||| ||||| Sbjct: 1012 acgactgctcgtcttggatcctttagggttctaactaacaaagcagttgaaaagaatgaa 953 Query: 84 ggnaggccattgccgcttgttcanaaagcttttattggtctaactgctgg 133 || | ||||||||| || |||| ||||||||||||||||| |||||||| Sbjct: 952 gggaagccattgcctctatttcagaaagcttttattggtctgactgctgg 903
>gb|AY103946.1| Zea mays PCO074099 mRNA sequence Length = 1530 Score = 79.8 bits (40), Expect = 4e-12 Identities = 92/110 (83%) Strand = Plus / Plus Query: 24 acgacagctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgat 83 ||||| ||||||||||||||||| |||||| | || ||||||||| |||| ||||| Sbjct: 431 acgactgctcgtcttggatcctttagggttctaactaacaaagcagttgaaaagaatgaa 490 Query: 84 ggnaggccattgccgcttgttcanaaagcttttattggtctaactgctgg 133 || | ||||||||| || |||| ||||||||||||||||| |||||||| Sbjct: 491 gggaagccattgcctctatttcagaaagcttttattggtctgactgctgg 540
>dbj|AK063666.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-C11, full insert sequence Length = 444 Score = 73.8 bits (37), Expect = 2e-10 Identities = 59/67 (88%) Strand = Plus / Plus Query: 1 gtttactaangcncgctacctatacgacagctcgtcttggatccttcagggttttgacaa 60 ||||||||| || || || ||||| || |||||||||||||||||||||||| |||||| Sbjct: 378 gtttactaaggcaggcgacatatactactgctcgtcttggatccttcagggttctgacaa 437 Query: 61 acaaagc 67 ||||||| Sbjct: 438 acaaagc 444
>dbj|AK068090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132N13, full insert sequence Length = 1354 Score = 65.9 bits (33), Expect = 5e-08 Identities = 79/95 (83%) Strand = Plus / Plus Query: 30 gctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgatggnagg 89 |||||||| |||||||| |||||| | ||||||||||| |||| ||||||||||| | | Sbjct: 434 gctcgtctcggatcctttagggttctaacaaacaaagcggttgaagcaaatgatgggaag 493 Query: 90 ccattgccgcttgttcanaaagcttttattggtct 124 ||| |||| || || || |||||| ||||||||| Sbjct: 494 ccactgcctctagtccagaaagctggtattggtct 528
>dbj|AK058511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G08, full insert sequence Length = 1246 Score = 65.9 bits (33), Expect = 5e-08 Identities = 79/95 (83%) Strand = Plus / Plus Query: 30 gctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgatggnagg 89 |||||||| |||||||| |||||| | ||||||||||| |||| ||||||||||| | | Sbjct: 317 gctcgtctcggatcctttagggttctaacaaacaaagcggttgaagcaaatgatgggaag 376 Query: 90 ccattgccgcttgttcanaaagcttttattggtct 124 ||| |||| || || || |||||| ||||||||| Sbjct: 377 ccactgcctctagtccagaaagctggtattggtct 411
>gb|AY428798.1| Citrus junos dicarboxylate/tricarboxylate carrier (dtc) mRNA, complete cds; mitochondrial Length = 1503 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 15 gctacctatacgacagctcgtcttggatccttcagggttttgacaaacaaagcaattgag 74 ||||| ||||| || |||||||||||||| || ||| | |||||||||||||||||||| Sbjct: 704 gctacatataccactgctcgtcttggatcatttaggatcttgacaaacaaagcaattgaa 763 Query: 75 gcaaatga 82 || ||||| Sbjct: 764 gccaatga 771
>gb|AF010583.1|AF010583 Oryza sativa 2-oxoglutarate/malate translocator mRNA, partial cds Length = 949 Score = 58.0 bits (29), Expect = 1e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 30 gctcgtcttggatccttcagggttttgacaaacaaagcaattgaggcaaatgatggnagg 89 |||||||| |||||||| |||||| | ||||||||||| |||| ||||||||||| | | Sbjct: 4 gctcgtctcggatcctttagggttctaacaaacaaagcggttgaagcaaatgatgggaag 63 Query: 90 ccattgcc 97 ||| |||| Sbjct: 64 ccactgcc 71
>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03 map S20262S, complete sequence Length = 149553 Score = 50.1 bits (25), Expect = 0.003 Identities = 65/79 (82%) Strand = Plus / Plus Query: 46 tcagggttttgacaaacaaagcaattgaggcaaatgatggnaggccattgccgcttgttc 105 |||||||| | ||||||||||| |||| ||||||||||| | |||| |||| || || | Sbjct: 81495 tcagggttctaacaaacaaagcggttgaagcaaatgatgggaagccactgcctctagtcc 81554 Query: 106 anaaagcttttattggtct 124 | |||||| ||||||||| Sbjct: 81555 agaaagctggtattggtct 81573
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.003 Identities = 65/79 (82%) Strand = Plus / Plus Query: 46 tcagggttttgacaaacaaagcaattgaggcaaatgatggnaggccattgccgcttgttc 105 |||||||| | ||||||||||| |||| ||||||||||| | |||| |||| || || | Sbjct: 13365142 tcagggttctaacaaacaaagcggttgaagcaaatgatgggaagccactgcctctagtcc 13365201 Query: 106 anaaagcttttattggtct 124 | |||||| ||||||||| Sbjct: 13365202 agaaagctggtattggtct 13365220
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.003 Identities = 65/79 (82%) Strand = Plus / Plus Query: 46 tcagggttttgacaaacaaagcaattgaggcaaatgatggnaggccattgccgcttgttc 105 |||||||| | ||||||||||| |||| ||||||||||| | |||| |||| || || | Sbjct: 13445321 tcagggttctaacaaacaaagcggttgaagcaaatgatgggaagccactgcctctagtcc 13445380 Query: 106 anaaagcttttattggtct 124 | |||||| ||||||||| Sbjct: 13445381 agaaagctggtattggtct 13445399
>dbj|D45075.1|PNI2OMTC Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 2371 Score = 50.1 bits (25), Expect = 0.003 Identities = 74/91 (81%) Strand = Plus / Plus Query: 46 tcagggttttgacaaacaaagcaattgaggcaaatgatggnaggccattgccgcttgttc 105 |||||||| | ||||| |||||| |||| |||||||| || | |||| | || || | | Sbjct: 954 tcagggttctaacaaataaagcagttgaagcaaatgagggaaagccactacctctactgc 1013 Query: 106 anaaagcttttattggtctaactgctggagc 136 | |||||| |||||||||| ||||||||||| Sbjct: 1014 aaaaagctgttattggtctcactgctggagc 1044 Score = 46.1 bits (23), Expect = 0.049 Identities = 26/27 (96%) Strand = Plus / Plus Query: 24 acgacagctcgtcttggatccttcagg 50 ||||| ||||||||||||||||||||| Sbjct: 479 acgaccgctcgtcttggatccttcagg 505
>dbj|D45074.1|PNI2OMTB Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 1783 Score = 50.1 bits (25), Expect = 0.003 Identities = 74/91 (81%) Strand = Plus / Plus Query: 46 tcagggttttgacaaacaaagcaattgaggcaaatgatggnaggccattgccgcttgttc 105 |||||||| | ||||| |||||| |||| |||||||| || | |||| | || || | | Sbjct: 880 tcagggttctaacaaataaagcagttgaagcaaatgagggaaagccactacctctactgc 939 Query: 106 anaaagcttttattggtctaactgctggagc 136 | |||||| |||||||||| ||||||||||| Sbjct: 940 aaaaagctgttattggtctcactgctggagc 970 Score = 46.1 bits (23), Expect = 0.049 Identities = 26/27 (96%) Strand = Plus / Plus Query: 24 acgacagctcgtcttggatccttcagg 50 ||||| ||||||||||||||||||||| Sbjct: 382 acgactgctcgtcttggatccttcagg 408
>gb|AC148177.13| Medicago truncatula clone mth2-4c9, complete sequence Length = 117329 Score = 48.1 bits (24), Expect = 0.012 Identities = 30/32 (93%) Strand = Plus / Plus Query: 54 ttgacaaacaaagcaattgaggcaaatgatgg 85 |||||||| |||||||||||||| |||||||| Sbjct: 9226 ttgacaaataaagcaattgaggctaatgatgg 9257
>gb|AC016759.11| Homo sapiens BAC clone RP11-535J8 from 2, complete sequence Length = 219574 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 aacaaagcaattgaggcaaatgat 83 |||||||||||||||| ||||||| Sbjct: 72728 aacaaagcaattgaggaaaatgat 72751
>gb|AC107209.4| Homo sapiens BAC clone RP11-4F12 from 2, complete sequence Length = 113078 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 aacaaagcaattgaggcaaatgat 83 |||||||||||||||| ||||||| Sbjct: 103940 aacaaagcaattgaggaaaatgat 103963
>dbj|AK103990.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B11, full insert sequence Length = 871 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 109 aagcttttattggtctaactgctggagc 136 ||||||||||||| || ||||||||||| Sbjct: 1 aagcttttattggccttactgctggagc 28
>emb|AL845526.25| Zebrafish DNA sequence from clone CH211-11P18 in linkage group 22, complete sequence Length = 165617 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gttttgacaaacaaagcaat 70 |||||||||||||||||||| Sbjct: 56317 gttttgacaaacaaagcaat 56298
>emb|AL928817.5| Zebrafish DNA sequence from clone CH211-244H4 in linkage group 22, complete sequence Length = 153594 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 gttttgacaaacaaagcaat 70 |||||||||||||||||||| Sbjct: 114461 gttttgacaaacaaagcaat 114480 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 845,517 Number of Sequences: 3902068 Number of extensions: 845517 Number of successful extensions: 13155 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13101 Number of HSP's gapped (non-prelim): 45 length of query: 235 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 213 effective length of database: 17,147,199,772 effective search space: 3652353551436 effective search space used: 3652353551436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)