ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1m07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
2dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
3gb|AY110316.1| Zea mays CL24857_1 mRNA sequence 105 2e-19
4gb|AC116723.13| Mus musculus chromosome 3, clone RP23-266J14, co... 44 0.54
5dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
6gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, co... 42 2.1
7gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, co... 42 2.1
8dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
9ref|NM_101441.2| Arabidopsis thaliana unknown protein AT1G15730 ... 40 8.4
10ref|NM_118194.2| Arabidopsis thaliana oxidoreductase AT4G20760 m... 40 8.4
11ref|NM_184112.2| Oryza sativa (japonica cultivar-group), mRNA 40 8.4
12emb|BX950201.12| Zebrafish DNA sequence from clone CH211-101L11 ... 40 8.4
13emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromos... 40 8.4
14gb|BT000860.1| Arabidopsis thaliana At4g20760/F21C20_110 mRNA, c... 40 8.4
15gb|BT000764.1| Arabidopsis thaliana clone RAFL09-39-L05 (R18723)... 40 8.4
16ref|XM_783215.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.4
17emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, ... 40 8.4
18emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, B... 40 8.4
19emb|CR762397.7| Zebrafish DNA sequence from clone DKEY-258A22 in... 40 8.4
20emb|BX539334.6| Zebrafish DNA sequence from clone DKEYP-4H2 in l... 40 8.4
21emb|AL807239.5| Zebrafish DNA sequence from clone CH211-231H1 in... 40 8.4
22gb|AY093965.1| Arabidopsis thaliana At1g15730/F7H2_7 mRNA, compl... 40 8.4
23gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map... 40 8.4
24gb|AC091899.2| Homo sapiens chromosome 5 clone RP11-158D20, comp... 40 8.4
25gb|AY052312.1| Arabidopsis thaliana AT4g20760/F21C20_110 mRNA, c... 40 8.4
26gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, comp... 40 8.4
27gb|AF367261.1|AF367261 Arabidopsis thaliana At1g15730/F7H2_7 mRN... 40 8.4
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
29emb|BX814741.1|CNS0AARA Arabidopsis thaliana Full-length cDNA Co... 40 8.4
30emb|BX813505.1|CNS0AAQX Arabidopsis thaliana Full-length cDNA Co... 40 8.4
31emb|BX842319.1|CNS0A2QW Arabidopsis thaliana Full-length cDNA Co... 40 8.4
32gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, comple... 40 8.4
33gb|AC092138.4| Homo sapiens chromosome 16 clone RP11-351A20, com... 40 8.4
34gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, com... 40 8.4
35gb|AF315736.1|AF315736 Arabidopsis thaliana PRLI-interacting fac... 40 8.4
36gb|AE004954.1| Pseudomonas aeruginosa PAO1, section 515 of 529 o... 40 8.4
37gb|AE004671.1| Pseudomonas aeruginosa PAO1, section 232 of 529 o... 40 8.4
38gb|AC034256.3|F7H2 Sequence of BAC F7H2 from Arabidopsis thalian... 40 8.4
39emb|BX248514.3| Zebrafish DNA sequence from clone CH211-237A6 in... 40 8.4
40dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
41dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
42dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
43dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
44emb|Z84815.1|HS2A2A Human DNA sequence from PAC 2A2 on chromosome X 40 8.4
45gb|AC131338.4| Mus musculus BAC clone RP23-29O10 from 18, comple... 40 8.4
46dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
47dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
48gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, compl... 40 8.4 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                            
Query: 33       aggctgacatgtggttggggaacctactgctggcacgcagtgatgatatataccggatga 92
                ||||||||||||||||||| ||||||||||| | |||||| ||||| |||||||||||||
Sbjct: 34093324 aggctgacatgtggttgggaaacctactgctagaacgcagcgatgacatataccggatga 34093383

                                                                
Query: 93       aagggctgctttctgtcagtggaatgccccaacgcttcgtctttcagg 140
                | ||||| |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 34093384 aggggctactttctgtcagtggaatgcctcagcgctttgtctttcagg 34093431



 Score =  109 bits (55), Expect = 1e-20
 Identities = 121/143 (84%)
 Strand = Plus / Plus

                                                                            
Query: 137      cagggagtgcatgacattttccagggatcacctgacaggatgtgggagcccaacgaaccg 196
                ||||||||||| ||||||||||||||||| || || || |||||||| || || || || 
Sbjct: 34093565 cagggagtgcacgacattttccagggatctcccgagagaatgtgggaaccaaatgagcca 34093624

                                                                            
Query: 197      cgcatcaacaagattgtgttcatcggcaggaacctgaaccgagaagagctggagacgggc 256
                ||||||||||||||||| ||||| |||| ||| || ||  | ||||| ||||||| ||||
Sbjct: 34093625 cgcatcaacaagattgtattcataggcaagaatctcaatggggaagaactggagaagggc 34093684

                                       
Query: 257      ttcaaggactgcctgctgaagaa 279
                |||||||| ||||| ||||||||
Sbjct: 34093685 ttcaaggattgcctactgaagaa 34093707



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 345      atctccagcttcatgattttgagctttgtggctgcagaac 384
                |||||||||||||||||||||||||||| ||||| |||||
Sbjct: 34093755 atctccagcttcatgattttgagctttgcggctgtagaac 34093794



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 443      atatgtgtatatagatttggggaaca 468
                |||||||||||||||||||| |||||
Sbjct: 18896568 atatgtgtatatagatttggagaaca 18896543



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 35       gctgacatgtggttggggaacctactgct 63
                |||| |||||||||||| |||||||||||
Sbjct: 32721053 gctggcatgtggttgggaaacctactgct 32721081
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>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0032L17
          Length = 165808

 Score =  135 bits (68), Expect = 2e-28
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                         
Query: 33    aggctgacatgtggttggggaacctactgctggcacgcagtgatgatatataccggatga 92
             ||||||||||||||||||| ||||||||||| | |||||| ||||| |||||||||||||
Sbjct: 20838 aggctgacatgtggttgggaaacctactgctagaacgcagcgatgacatataccggatga 20897

                                                             
Query: 93    aagggctgctttctgtcagtggaatgccccaacgcttcgtctttcagg 140
             | ||||| |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 20898 aggggctactttctgtcagtggaatgcctcagcgctttgtctttcagg 20945



 Score =  109 bits (55), Expect = 1e-20
 Identities = 121/143 (84%)
 Strand = Plus / Plus

                                                                         
Query: 137   cagggagtgcatgacattttccagggatcacctgacaggatgtgggagcccaacgaaccg 196
             ||||||||||| ||||||||||||||||| || || || |||||||| || || || || 
Sbjct: 21079 cagggagtgcacgacattttccagggatctcccgagagaatgtgggaaccaaatgagcca 21138

                                                                         
Query: 197   cgcatcaacaagattgtgttcatcggcaggaacctgaaccgagaagagctggagacgggc 256
             ||||||||||||||||| ||||| |||| ||| || ||  | ||||| ||||||| ||||
Sbjct: 21139 cgcatcaacaagattgtattcataggcaagaatctcaatggggaagaactggagaagggc 21198

                                    
Query: 257   ttcaaggactgcctgctgaagaa 279
             |||||||| ||||| ||||||||
Sbjct: 21199 ttcaaggattgcctactgaagaa 21221



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 345   atctccagcttcatgattttgagctttgtggctgcagaac 384
             |||||||||||||||||||||||||||| ||||| |||||
Sbjct: 21269 atctccagcttcatgattttgagctttgcggctgtagaac 21308
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>gb|AY110316.1| Zea mays CL24857_1 mRNA sequence
          Length = 582

 Score =  105 bits (53), Expect = 2e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                       
Query: 98  ctgctttctgtcagtggaatgccccaacgcttcgtctttcagggagtgcatgacattttc 157
           ||||||||||||||||||||| | || || || |||||||||||||| ||||||||||||
Sbjct: 578 ctgctttctgtcagtggaatgtcgcagcgatttgtctttcagggagtccatgacattttc 519

                                        
Query: 158 cagggatcacctgacaggatgtgggagcc 186
           |||||||| ||||| || |||||||||||
Sbjct: 518 cagggatctcctgagagaatgtgggagcc 490



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 217 catcggcaggaacctgaaccgagaagagctggagacgggcttcaaggactgcctgctgaa 276
           ||||||||||||||| ||   |||||||||||| | ||| |||||||| ||||| |||||
Sbjct: 459 catcggcaggaacctcaataaagaagagctggataaggggttcaaggattgcctactgaa 400

              
Query: 277 gaa 279
           |||
Sbjct: 399 gaa 397



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 353 cttcatgattttgagctttgtggctgcagaac 384
           ||||||||||||||| |||||||| |||||||
Sbjct: 212 cttcatgattttgagttttgtggccgcagaac 181
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>gb|AC116723.13| Mus musculus chromosome 3, clone RP23-266J14, complete sequence
          Length = 184835

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 451    atatagatttggggaacatcag 472
              ||||||||||||||||||||||
Sbjct: 107847 atatagatttggggaacatcag 107868
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>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461D06
          Length = 112895

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 443   atatgtgtatatagatttggggaaca 468
             |||||||||||||||||||| |||||
Sbjct: 60101 atatgtgtatatagatttggagaaca 60076
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>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence
          Length = 179157

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   atgaaagggctgctttctgtc 109
            |||||||||||||||||||||
Sbjct: 8536 atgaaagggctgctttctgtc 8516
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>gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, complete sequence
          Length = 181487

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     atgaaagggctgctttctgtc 109
              |||||||||||||||||||||
Sbjct: 104881 atgaaagggctgctttctgtc 104861
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>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1448_G06
          Length = 136823

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 35    gctgacatgtggttggggaacctactgct 63
             |||| |||||||||||| |||||||||||
Sbjct: 49288 gctggcatgtggttgggaaacctactgct 49316
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>ref|NM_101441.2| Arabidopsis thaliana unknown protein AT1G15730 mRNA, complete cds
          Length = 1901

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 202  caacaagattgtgttcatcggcaggaacctgaaccg 237
            |||||||||||| |||||||||| |||  |||||||
Sbjct: 1319 caacaagattgttttcatcggcaagaatttgaaccg 1354
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>ref|NM_118194.2| Arabidopsis thaliana oxidoreductase AT4G20760 mRNA, complete cds
          Length = 1154

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 tgtctactgtgcctggatgt 529
           ||||||||||||||||||||
Sbjct: 770 tgtctactgtgcctggatgt 751
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>ref|NM_184112.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 198 gcatcaacaagattgtgttcatcg 221
           |||||| |||||||||||||||||
Sbjct: 223 gcatcagcaagattgtgttcatcg 246
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>emb|BX950201.12| Zebrafish DNA sequence from clone CH211-101L11 in linkage group 1,
              complete sequence
          Length = 167099

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    ccaaaaccgtgaacgaaccg 430
              ||||||||||||||||||||
Sbjct: 134795 ccaaaaccgtgaacgaaccg 134776
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>emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromosome Xq21, complete
              sequence
          Length = 129249

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    gcttcatgattttgagcttt 371
              ||||||||||||||||||||
Sbjct: 122017 gcttcatgattttgagcttt 121998
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>gb|BT000860.1| Arabidopsis thaliana At4g20760/F21C20_110 mRNA, complete cds
          Length = 897

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 tgtctactgtgcctggatgt 529
           ||||||||||||||||||||
Sbjct: 742 tgtctactgtgcctggatgt 723
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>gb|BT000764.1| Arabidopsis thaliana clone RAFL09-39-L05 (R18723) putative
            PRLI-interacting factor L (At1g15730) mRNA, complete cds
          Length = 1568

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 202  caacaagattgtgttcatcggcaggaacctgaaccg 237
            |||||||||||| |||||||||| |||  |||||||
Sbjct: 1318 caacaagattgttttcatcggcaagaatttgaaccg 1353
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>ref|XM_783215.1| PREDICTED: Strongylocentrotus purpuratus similar to F-box and
           leucine-rich repeat protein 5 (LOC583300), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 257 ttcaaggactgcctgctgaa 276
           ||||||||||||||||||||
Sbjct: 670 ttcaaggactgcctgctgaa 689
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>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53
          Length = 197568

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 510    tgtctactgtgcctggatgt 529
              ||||||||||||||||||||
Sbjct: 134531 tgtctactgtgcctggatgt 134512
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>emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, BAC clone F21C20 (ESSA project)
          Length = 69563

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   tgtctactgtgcctggatgt 529
             ||||||||||||||||||||
Sbjct: 39048 tgtctactgtgcctggatgt 39029
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>emb|CR762397.7| Zebrafish DNA sequence from clone DKEY-258A22 in linkage group 14,
             complete sequence
          Length = 107563

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   cctggatgtcagatgttttg 540
             ||||||||||||||||||||
Sbjct: 62016 cctggatgtcagatgttttg 62035
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>emb|BX539334.6| Zebrafish DNA sequence from clone DKEYP-4H2 in linkage group 14,
             complete sequence
          Length = 114428

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   cctggatgtcagatgttttg 540
             ||||||||||||||||||||
Sbjct: 45548 cctggatgtcagatgttttg 45529
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>emb|AL807239.5| Zebrafish DNA sequence from clone CH211-231H1 in linkage group 14
             Contains the 5' part of a novel gene similar to human,
             rodent and Oreochromis mossambicus GRIA3 (ionotropic
             glutamate receptor AMPA3) and five CpG islands, complete
             sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   cctggatgtcagatgttttg 540
             ||||||||||||||||||||
Sbjct: 76586 cctggatgtcagatgttttg 76567
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>gb|AY093965.1| Arabidopsis thaliana At1g15730/F7H2_7 mRNA, complete cds
          Length = 1347

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 202  caacaagattgtgttcatcggcaggaacctgaaccg 237
            |||||||||||| |||||||||| |||  |||||||
Sbjct: 1272 caacaagattgttttcatcggcaagaatttgaaccg 1307
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>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete
            sequence
          Length = 115851

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 583  cctgtgaattgaagaatttg 602
            ||||||||||||||||||||
Sbjct: 9609 cctgtgaattgaagaatttg 9590
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>gb|AC091899.2| Homo sapiens chromosome 5 clone RP11-158D20, complete sequence
          Length = 139253

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   tgcctggatgtcagatgttt 538
             ||||||||||||||||||||
Sbjct: 44349 tgcctggatgtcagatgttt 44330
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>gb|AY052312.1| Arabidopsis thaliana AT4g20760/F21C20_110 mRNA, complete cds
          Length = 1155

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 tgtctactgtgcctggatgt 529
           ||||||||||||||||||||
Sbjct: 770 tgtctactgtgcctggatgt 751
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>gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, complete sequence
          Length = 151019

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 519  tgcctggatgtcagatgttt 538
            ||||||||||||||||||||
Sbjct: 5054 tgcctggatgtcagatgttt 5073
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>gb|AF367261.1|AF367261 Arabidopsis thaliana At1g15730/F7H2_7 mRNA, complete cds
          Length = 1442

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 202  caacaagattgtgttcatcggcaggaacctgaaccg 237
            |||||||||||| |||||||||| |||  |||||||
Sbjct: 1304 caacaagattgttttcatcggcaagaatttgaaccg 1339
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 198     gcatcaacaagattgtgttcatcg 221
               |||||| |||||||||||||||||
Sbjct: 1009486 gcatcagcaagattgtgttcatcg 1009509
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>emb|BX814741.1|CNS0AARA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB91ZH12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1400

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 202  caacaagattgtgttcatcggcaggaacctgaaccg 237
            |||||||||||| |||||||||| |||  |||||||
Sbjct: 1297 caacaagattgttttcatcggcaagaatttgaaccg 1332
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>emb|BX813505.1|CNS0AAQX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB20ZH11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1363

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 202  caacaagattgtgttcatcggcaggaacctgaaccg 237
            |||||||||||| |||||||||| |||  |||||||
Sbjct: 1258 caacaagattgttttcatcggcaagaatttgaaccg 1293
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>emb|BX842319.1|CNS0A2QW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL54ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 863

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 510 tgtctactgtgcctggatgt 529
           ||||||||||||||||||||
Sbjct: 515 tgtctactgtgcctggatgt 496
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>gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   tccgtttctcctacgtgcgt 329
             ||||||||||||||||||||
Sbjct: 13974 tccgtttctcctacgtgcgt 13993
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>gb|AC092138.4| Homo sapiens chromosome 16 clone RP11-351A20, complete sequence
          Length = 189505

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   tgagctttgtggctgcagaa 383
             ||||||||||||||||||||
Sbjct: 13760 tgagctttgtggctgcagaa 13741
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>gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, complete sequence
          Length = 207345

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    tgagctttgtggctgcagaa 383
              ||||||||||||||||||||
Sbjct: 181678 tgagctttgtggctgcagaa 181659
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>gb|AF315736.1|AF315736 Arabidopsis thaliana PRLI-interacting factor L mRNA, partial cds
          Length = 875

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 202 caacaagattgtgttcatcggcaggaacctgaaccg 237
           |||||||||||| |||||||||| |||  |||||||
Sbjct: 663 caacaagattgttttcatcggcaagaatttgaaccg 698
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>gb|AE004954.1| Pseudomonas aeruginosa PAO1, section 515 of 529 of the complete
            genome
          Length = 10058

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 239  gaagagctggagacgggcttcaaggact 266
            |||| ||||||| |||||||||||||||
Sbjct: 1759 gaagcgctggagccgggcttcaaggact 1786
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>gb|AE004671.1| Pseudomonas aeruginosa PAO1, section 232 of 529 of the complete
            genome
          Length = 10746

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 239  gaagagctggagacgggcttcaaggact 266
            |||| ||||||| |||||||||||||||
Sbjct: 9814 gaagcgctggagccgggcttcaaggact 9787
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>gb|AC034256.3|F7H2 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 77521

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 202   caacaagattgtgttcatcggcaggaacctgaaccg 237
             |||||||||||| |||||||||| |||  |||||||
Sbjct: 20183 caacaagattgttttcatcggcaagaatttgaaccg 20148
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>emb|BX248514.3| Zebrafish DNA sequence from clone CH211-237A6 in linkage group 1,
              complete sequence
          Length = 165693

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    ccaaaaccgtgaacgaaccg 430
              ||||||||||||||||||||
Sbjct: 138283 ccaaaaccgtgaacgaaccg 138264
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>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698G03
          Length = 147857

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 198    gcatcaacaagattgtgttcatcg 221
              |||||| |||||||||||||||||
Sbjct: 144931 gcatcagcaagattgtgttcatcg 144954
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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0494A10
          Length = 145576

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   gcatcaacaagattgtgttcatcg 221
             |||||| |||||||||||||||||
Sbjct: 47154 gcatcagcaagattgtgttcatcg 47177
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>dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E02, full
           insert sequence
          Length = 1353

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 198 gcatcaacaagattgtgttcatcg 221
           |||||| |||||||||||||||||
Sbjct: 223 gcatcagcaagattgtgttcatcg 246
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>dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C11, full
           insert sequence
          Length = 1369

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 198 gcatcaacaagattgtgttcatcg 221
           |||||| |||||||||||||||||
Sbjct: 226 gcatcagcaagattgtgttcatcg 249
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>emb|Z84815.1|HS2A2A Human DNA sequence from PAC 2A2 on chromosome X
          Length = 32671

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  gcttcatgattttgagcttt 371
            ||||||||||||||||||||
Sbjct: 7233 gcttcatgattttgagcttt 7252
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>gb|AC131338.4| Mus musculus BAC clone RP23-29O10 from 18, complete sequence
          Length = 203229

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   gaattgaagaatttgcttca 607
             ||||||||||||||||||||
Sbjct: 67178 gaattgaagaatttgcttca 67197
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>dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A04, full
           insert sequence
          Length = 1488

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 198 gcatcaacaagattgtgttcatcg 221
           |||||| |||||||||||||||||
Sbjct: 220 gcatcagcaagattgtgttcatcg 243
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>dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D10, full
           insert sequence
          Length = 1039

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 198 gcatcaacaagattgtgttcatcg 221
           |||||| |||||||||||||||||
Sbjct: 228 gcatcagcaagattgtgttcatcg 251
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>gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, complete cds
          Length = 1529

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 57 tactgctggcacgcagtgat 76
          ||||||||||||||||||||
Sbjct: 43 tactgctggcacgcagtgat 62


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,235,150
Number of Sequences: 3902068
Number of extensions: 5235150
Number of successful extensions: 91491
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91323
Number of HSP's gapped (non-prelim): 168
length of query: 618
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 595
effective length of database: 17,143,297,704
effective search space: 10200262133880
effective search space used: 10200262133880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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