ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1l24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_471943.1| Oryza sativa (japonica cultivar-group), predic... 78 9e-12
2emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4,... 78 9e-12
3emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4,... 78 9e-12
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 9e-12
5dbj|AK099774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 9e-12
6dbj|AK061686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 9e-12
7ref|XM_471940.1| Oryza sativa (japonica cultivar-group), predic... 58 8e-06
8dbj|AK104524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 8e-06
9dbj|AK068652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 8e-06
10gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.12
11gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.12
12ref|XM_471950.1| Oryza sativa (japonica cultivar-group), predic... 42 0.47
13ref|XM_471942.1| Oryza sativa (japonica cultivar-group), predic... 42 0.47
14gb|AE012487.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 0.47
15gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 0.47
16dbj|AK103553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.47
17gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 1.9
18ref|XM_471225.1| Oryza sativa (japonica cultivar-group), predic... 38 7.3
19ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative... 38 7.3
20gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 38 7.3
21emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 38 7.3
22emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4,... 38 7.3
23gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, comp... 38 7.3
24gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, compl... 38 7.3
25gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 38 7.3
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
27emb|BX890594.1|OSJN00301 Oryza sativa genomic DNA, chromosome 4,... 38 7.3
28gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 38 7.3
29dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.3
30dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.3
31dbj|AK061807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.3
32gb|AY107154.1| Zea mays PCO148860 mRNA sequence 38 7.3
33gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 7.3
34gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
35emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4,... 38 7.3

>ref|XM_471943.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 14  gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
           |||||||||||||||||||||||| | ||||  |||||||||||||| || || || || 
Sbjct: 265 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 324

                                           
Query: 74  ncggcctacgtgcggncggngtgcgagggcag 105
            |||| ||||||||  ||| ||||||||||||
Sbjct: 325 ccggcgtacgtgcgcgcggcgtgcgagggcag 356



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>emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032I19,
             complete sequence
          Length = 145383

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                         
Query: 14    gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
             |||||||||||||||||||||||| | ||||  |||||||||||||| || || || || 
Sbjct: 13807 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 13866

                                             
Query: 74    ncggcctacgtgcggncggngtgcgagggcag 105
              |||| ||||||||  ||| ||||||||||||
Sbjct: 13867 ccggcgtacgtgcgcgcggcgtgcgagggcag 13898



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                         
Query: 1     gagggagagggtagagctggccaccaagttcggcatctctttcgccgacggcaagcggga 60
             |||||||| ||| ||| ||||||| ||||||| | |||| ||||||||||| |||  |||
Sbjct: 22506 gagggagaaggtggaggtggccacgaagttcgccgtctcgttcgccgacgggaaggtgga 22565

                                                          
Query: 61    ggttcgaggagatncggcctacgtgcggncggngtgcgagggcag 105
             | | || || ||  |||| ||||||||| ||| ||||||||||||
Sbjct: 22566 gatccgcggcgacccggcgtacgtgcgggcggcgtgcgagggcag 22610



 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 75    cggcctacgtgcggncggngtgcgagggcag 105
             |||| ||||||||| ||| ||||||||||||
Sbjct: 99593 cggcgtacgtgcgggcggcgtgcgagggcag 99623



 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                           
Query: 75   cggcctacgtgcggncggngtgcgagggcag 105
            |||| ||||||||| ||| ||||||||||||
Sbjct: 2821 cggcgtacgtgcgggcggcgtgcgagggcag 2851



 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    tggccaccaagttcggcatc 37
             ||||||||||||||||||||
Sbjct: 99545 tggccaccaagttcggcatc 99564



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>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
              complete sequence
          Length = 130521

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                          
Query: 14     gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
              |||||||||||||||||||||||| | ||||  |||||||||||||| || || || || 
Sbjct: 116159 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 116218

                                              
Query: 74     ncggcctacgtgcggncggngtgcgagggcag 105
               |||| ||||||||  ||| ||||||||||||
Sbjct: 116219 ccggcgtacgtgcgcgcggcgtgcgagggcag 116250



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                          
Query: 1      gagggagagggtagagctggccaccaagttcggcatctctttcgccgacggcaagcggga 60
              |||||||| ||| ||| ||||||| ||||||| | |||| ||||||||||| |||  |||
Sbjct: 124858 gagggagaaggtggaggtggccacgaagttcgccgtctcgttcgccgacgggaaggtgga 124917

                                                           
Query: 61     ggttcgaggagatncggcctacgtgcggncggngtgcgagggcag 105
              | | || || ||  |||| ||||||||| ||| ||||||||||||
Sbjct: 124918 gatccgcggcgacccggcgtacgtgcgggcggcgtgcgagggcag 124962



 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                         
Query: 8     agggtagagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcga 67
             ||||| ||||||||||||||||||||||  |  ||||||| |||||||| || | | || 
Sbjct: 89272 agggttgagctggccaccaagttcggcaagttcttcgccggcggcaagccggggatccgc 89331

                                                   
Query: 68    ggagatncggcctacgtgcggncggngtgcgagggcag 105
             || ||  |||| ||||||||  ||| ||||||||||||
Sbjct: 89332 ggcgacccggcgtacgtgcgcgcggcgtgcgagggcag 89369



 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                             
Query: 75     cggcctacgtgcggncggngtgcgagggcag 105
              |||| ||||||||| ||| ||||||||||||
Sbjct: 105173 cggcgtacgtgcgggcggcgtgcgagggcag 105203



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                            
Query: 14       gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
                |||||||||||||||||||||||| | ||||  |||||||||||||| || || || || 
Sbjct: 15929594 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 15929653

                                                
Query: 74       ncggcctacgtgcggncggngtgcgagggcag 105
                 |||| ||||||||  ||| ||||||||||||
Sbjct: 15929654 ccggcgtacgtgcgcgcggcgtgcgagggcag 15929685



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                            
Query: 1        gagggagagggtagagctggccaccaagttcggcatctctttcgccgacggcaagcggga 60
                |||||||| ||| ||| ||||||| ||||||| | |||| ||||||||||| |||  |||
Sbjct: 15938293 gagggagaaggtggaggtggccacgaagttcgccgtctcgttcgccgacgggaaggtgga 15938352

                                                             
Query: 61       ggttcgaggagatncggcctacgtgcggncggngtgcgagggcag 105
                | | || || ||  |||| ||||||||| ||| ||||||||||||
Sbjct: 15938353 gatccgcggcgacccggcgtacgtgcgggcggcgtgcgagggcag 15938397



 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                            
Query: 8        agggtagagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcga 67
                ||||| ||||||||||||||||||||||  |  ||||||| |||||||| || | | || 
Sbjct: 15902707 agggttgagctggccaccaagttcggcaagttcttcgccggcggcaagccggggatccgc 15902766

                                                      
Query: 68       ggagatncggcctacgtgcggncggngtgcgagggcag 105
                || ||  |||| ||||||||  ||| ||||||||||||
Sbjct: 15902767 ggcgacccggcgtacgtgcgcgcggcgtgcgagggcag 15902804



 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                               
Query: 75       cggcctacgtgcggncggngtgcgagggcag 105
                |||| ||||||||| ||| ||||||||||||
Sbjct: 16015380 cggcgtacgtgcgggcggcgtgcgagggcag 16015410



 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                               
Query: 75       cggcctacgtgcggncggngtgcgagggcag 105
                |||| ||||||||| ||| ||||||||||||
Sbjct: 15918608 cggcgtacgtgcgggcggcgtgcgagggcag 15918638



 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 18       tggccaccaagttcggcatc 37
                ||||||||||||||||||||
Sbjct: 16015332 tggccaccaagttcggcatc 16015351



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 33       gcatctctttcgccgacggcaag 55
                |||||||||||||||| ||||||
Sbjct: 17550686 gcatctctttcgccgaaggcaag 17550708



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 33      gcatctctttcgccgacggcaag 55
               |||||||||||||||| ||||||
Sbjct: 9902523 gcatctctttcgccgaaggcaag 9902501



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 33      gcatctctttcgccgacggcaag 55
               |||||||||||||||| ||||||
Sbjct: 2367584 gcatctctttcgccgaaggcaag 2367562



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>dbj|AK099774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095E15, full
           insert sequence
          Length = 1374

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 14  gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
           |||||||||||||||||||||||| | ||||  |||||||||||||| || || || || 
Sbjct: 301 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 360

                                           
Query: 74  ncggcctacgtgcggncggngtgcgagggcag 105
            |||| ||||||||  ||| ||||||||||||
Sbjct: 361 ccggcgtacgtgcgcgcggcgtgcgagggcag 392



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>dbj|AK061686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B01, full
           insert sequence
          Length = 1366

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 14  gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
           |||||||||||||||||||||||| | ||||  |||||||||||||| || || || || 
Sbjct: 300 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 359

                                           
Query: 74  ncggcctacgtgcggncggngtgcgagggcag 105
            |||| ||||||||  ||| ||||||||||||
Sbjct: 360 ccggcgtacgtgcgcgcggcgtgcgagggcag 391



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>ref|XM_471940.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1038

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 8   agggtagagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcga 67
           ||||| ||||||||||||||||||||||  |  ||||||| |||||||| || | | || 
Sbjct: 247 agggttgagctggccaccaagttcggcaagttcttcgccggcggcaagccggggatccgc 306

                                                 
Query: 68  ggagatncggcctacgtgcggncggngtgcgagggcag 105
           || ||  |||| ||||||||  ||| ||||||||||||
Sbjct: 307 ggcgacccggcgtacgtgcgcgcggcgtgcgagggcag 344



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>dbj|AK104524.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G01, full
           insert sequence
          Length = 1407

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 8   agggtagagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcga 67
           ||||| ||||||||||||||||||||||  |  ||||||| |||||||| || | | || 
Sbjct: 301 agggttgagctggccaccaagttcggcaagttcttcgccggcggcaagccggggatccgc 360

                                                 
Query: 68  ggagatncggcctacgtgcggncggngtgcgagggcag 105
           || ||  |||| ||||||||  ||| ||||||||||||
Sbjct: 361 ggcgacccggcgtacgtgcgcgcggcgtgcgagggcag 398



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>dbj|AK068652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160A22, full
           insert sequence
          Length = 1448

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 8   agggtagagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcga 67
           ||||| ||||||||||||||||||||||  |  ||||||| |||||||| || | | || 
Sbjct: 302 agggttgagctggccaccaagttcggcaagttcttcgccggcggcaagccggggatccgc 361

                                                 
Query: 68  ggagatncggcctacgtgcggncggngtgcgagggcag 105
           || ||  |||| ||||||||  ||| ||||||||||||
Sbjct: 362 ggcgacccggcgtacgtgcgcgcggcgtgcgagggcag 399



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 16      gctggccaccaagttcggcatc 37
               ||||||||||||||||||||||
Sbjct: 1814036 gctggccaccaagttcggcatc 1814057



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 16      gctggccaccaagttcggcatc 37
               ||||||||||||||||||||||
Sbjct: 1196694 gctggccaccaagttcggcatc 1196715



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>ref|XM_471950.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1068

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 75  cggcctacgtgcggncggngtgcgagggcag 105
           |||| ||||||||| ||| ||||||||||||
Sbjct: 338 cggcgtacgtgcgggcggcgtgcgagggcag 368



 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 18  tggccaccaagttcggcatc 37
           ||||||||||||||||||||
Sbjct: 290 tggccaccaagttcggcatc 309



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>ref|XM_471942.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1107

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 75  cggcctacgtgcggncggngtgcgagggcag 105
           |||| ||||||||| ||| ||||||||||||
Sbjct: 326 cggcgtacgtgcgggcggcgtgcgagggcag 356



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>gb|AE012487.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 395 of
             460 of the complete genome
          Length = 10967

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    ctggccaccaagttcggcatc 37
             |||||||||||||||||||||
Sbjct: 10124 ctggccaccaagttcggcatc 10144



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 17      ctggccaccaagttcggcatc 37
               |||||||||||||||||||||
Sbjct: 4427736 ctggccaccaagttcggcatc 4427756



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>dbj|AK103553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132F18, full
           insert sequence
          Length = 1236

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 75  cggcctacgtgcggncggngtgcgagggcag 105
           |||| ||||||||| ||| ||||||||||||
Sbjct: 390 cggcgtacgtgcgggcggcgtgcgagggcag 420



 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 18  tggccaccaagttcggcatc 37
           ||||||||||||||||||||
Sbjct: 342 tggccaccaagttcggcatc 361



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 42      tcgccgacggcaagcgggag 61
               ||||||||||||||||||||
Sbjct: 1502220 tcgccgacggcaagcgggag 1502201



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>ref|XM_471225.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3972

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 33   gcatctctttcgccgacggcaag 55
            |||||||||||||||| ||||||
Sbjct: 2981 gcatctctttcgccgaaggcaag 3003



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>ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative polyprotein
           (OSJNBa0006I13.8), mRNA
          Length = 1305

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 18  tggccaccaagttcggcat 36
           |||||||||||||||||||
Sbjct: 254 tggccaccaagttcggcat 272



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 43      cgccgacggcaagcgggaggttc 65
               |||||||||||||| ||||||||
Sbjct: 2813439 cgccgacggcaagctggaggttc 2813417



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 43     cgccgacggcaagcgggaggttc 65
              |||||||||||||| ||||||||
Sbjct: 995639 cgccgacggcaagctggaggttc 995617



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>emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016B03,
             complete sequence
          Length = 125780

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 33    gcatctctttcgccgacggcaag 55
             |||||||||||||||| ||||||
Sbjct: 92903 gcatctctttcgccgaaggcaag 92881



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>gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, complete sequence
          Length = 154272

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 21   ccaccaagttcggcatctctttc 43
            |||||||||| ||||||||||||
Sbjct: 5143 ccaccaagtttggcatctctttc 5121



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>gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, complete sequence
          Length = 188887

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 21    ccaccaagttcggcatctctttc 43
             |||||||||| ||||||||||||
Sbjct: 27854 ccaccaagtttggcatctctttc 27876



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 43      cgccgacggcaagcgggaggttc 65
               |||||||||||||| ||||||||
Sbjct: 1487577 cgccgacggcaagctggaggttc 1487599



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 18       tggccaccaagttcggcat 36
                |||||||||||||||||||
Sbjct: 14219171 tggccaccaagttcggcat 14219189



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>emb|BX890594.1|OSJN00301 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062N22,
              complete sequence
          Length = 181586

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 33     gcatctctttcgccgacggcaag 55
              |||||||||||||||| ||||||
Sbjct: 143455 gcatctctttcgccgaaggcaag 143433



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>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
             complete sequence
          Length = 142737

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    tggccaccaagttcggcat 36
             |||||||||||||||||||
Sbjct: 91244 tggccaccaagttcggcat 91262



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>dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145C18, full
           insert sequence
          Length = 1334

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 18  tggccaccaagttcggcat 36
           |||||||||||||||||||
Sbjct: 335 tggccaccaagttcggcat 353



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>dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H09, full
           insert sequence
          Length = 1355

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 18  tggccaccaagttcggcat 36
           |||||||||||||||||||
Sbjct: 350 tggccaccaagttcggcat 368



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>dbj|AK061807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A04, full
           insert sequence
          Length = 1106

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 67/84 (79%)
 Strand = Plus / Plus

                                                                       
Query: 22  caccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagatncggccta 81
           ||||||||||||||  |  ||||||| |||||||| || | | || || ||  |||| ||
Sbjct: 1   caccaagttcggcaagttcttcgccggcggcaagccggggatccgcggcgacccggcgta 60

                                   
Query: 82  cgtgcggncggngtgcgagggcag 105
           ||||||  ||| ||||||||||||
Sbjct: 61  cgtgcgcgcggcgtgcgagggcag 84



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>gb|AY107154.1| Zea mays PCO148860 mRNA sequence
          Length = 1102

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                             
Query: 23 accaagttcggcatctctttcgccgacggcaagcg 57
          |||||||| | | |||| |||||||||||||||||
Sbjct: 2  accaagtttgccgtctccttcgccgacggcaagcg 36



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 16      gctggccaccaagttcggc 34
               |||||||||||||||||||
Sbjct: 1915680 gctggccaccaagttcggc 1915662



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 18       tggccaccaagttcggcat 36
                |||||||||||||||||||
Sbjct: 14227413 tggccaccaagttcggcat 14227431



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>emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081G05,
             complete sequence
          Length = 173950

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 33    gcatctctttcgccgacggcaag 55
             |||||||||||||||| ||||||
Sbjct: 31426 gcatctctttcgccgaaggcaag 31448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 570,740
Number of Sequences: 3902068
Number of extensions: 570740
Number of successful extensions: 27757
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27351
Number of HSP's gapped (non-prelim): 398
length of query: 152
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 131
effective length of database: 17,151,101,840
effective search space: 2246794341040
effective search space used: 2246794341040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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