No.
Definition
Score (bits)
E Value
1 ref|XM_471943.1| Oryza sativa (japonica cultivar-group), predic...
78
9e-12
2 emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4,...
78
9e-12
3 emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4,...
78
9e-12
4 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
78
9e-12
5 dbj|AK099774.1| Oryza sativa (japonica cultivar-group) cDNA clon...
78
9e-12
6 dbj|AK061686.1| Oryza sativa (japonica cultivar-group) cDNA clon...
78
9e-12
7 ref|XM_471940.1| Oryza sativa (japonica cultivar-group), predic...
58
8e-06
8 dbj|AK104524.1| Oryza sativa (japonica cultivar-group) cDNA clon...
58
8e-06
9 dbj|AK068652.1| Oryza sativa (japonica cultivar-group) cDNA clon...
58
8e-06
10 gb|CP000249.1| Frankia sp. CcI3, complete genome
44
0.12
11 gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge...
44
0.12
12 ref|XM_471950.1| Oryza sativa (japonica cultivar-group), predic...
42
0.47
13 ref|XM_471942.1| Oryza sativa (japonica cultivar-group), predic...
42
0.47
14 gb|AE012487.1| Xanthomonas campestris pv. campestris str. ATCC 3...
42
0.47
15 gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ...
42
0.47
16 dbj|AK103553.1| Oryza sativa (japonica cultivar-group) cDNA clon...
42
0.47
17 gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
40
1.9
18 ref|XM_471225.1| Oryza sativa (japonica cultivar-group), predic...
38
7.3
19 ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative...
38
7.3
20 gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co...
38
7.3
21 emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos...
38
7.3
22 emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4,...
38
7.3
23 gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, comp...
38
7.3
24 gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, compl...
38
7.3
25 gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp...
38
7.3
26 dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...
38
7.3
27 emb|BX890594.1|OSJN00301 Oryza sativa genomic DNA, chromosome 4,...
38
7.3
28 gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00...
38
7.3
29 dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clon...
38
7.3
30 dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clon...
38
7.3
31 dbj|AK061807.1| Oryza sativa (japonica cultivar-group) cDNA clon...
38
7.3
32 gb|AY107154.1| Zea mays PCO148860 mRNA sequence
38
7.3
33 gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...
38
7.3
34 gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...
38
7.3
35 emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4,...
38
7.3
>emb|AL606625.3 |OSJN00039 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032I19,
complete sequence
Length = 145383
Score = 77.8 bits (39), Expect = 9e-12
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 14 gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
|||||||||||||||||||||||| | |||| |||||||||||||| || || || ||
Sbjct: 13807 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 13866
Query: 74 ncggcctacgtgcggncggngtgcgagggcag 105
|||| |||||||| ||| ||||||||||||
Sbjct: 13867 ccggcgtacgtgcgcgcggcgtgcgagggcag 13898
Score = 63.9 bits (32), Expect = 1e-07
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 1 gagggagagggtagagctggccaccaagttcggcatctctttcgccgacggcaagcggga 60
|||||||| ||| ||| ||||||| ||||||| | |||| ||||||||||| ||| |||
Sbjct: 22506 gagggagaaggtggaggtggccacgaagttcgccgtctcgttcgccgacgggaaggtgga 22565
Query: 61 ggttcgaggagatncggcctacgtgcggncggngtgcgagggcag 105
| | || || || |||| ||||||||| ||| ||||||||||||
Sbjct: 22566 gatccgcggcgacccggcgtacgtgcgggcggcgtgcgagggcag 22610
Score = 42.1 bits (21), Expect = 0.47
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 75 cggcctacgtgcggncggngtgcgagggcag 105
|||| ||||||||| ||| ||||||||||||
Sbjct: 99593 cggcgtacgtgcgggcggcgtgcgagggcag 99623
Score = 42.1 bits (21), Expect = 0.47
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 75 cggcctacgtgcggncggngtgcgagggcag 105
|||| ||||||||| ||| ||||||||||||
Sbjct: 2821 cggcgtacgtgcgggcggcgtgcgagggcag 2851
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 tggccaccaagttcggcatc 37
||||||||||||||||||||
Sbjct: 99545 tggccaccaagttcggcatc 99564
>emb|AL606589.3 |OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
complete sequence
Length = 130521
Score = 77.8 bits (39), Expect = 9e-12
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 14 gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
|||||||||||||||||||||||| | |||| |||||||||||||| || || || ||
Sbjct: 116159 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 116218
Query: 74 ncggcctacgtgcggncggngtgcgagggcag 105
|||| |||||||| ||| ||||||||||||
Sbjct: 116219 ccggcgtacgtgcgcgcggcgtgcgagggcag 116250
Score = 63.9 bits (32), Expect = 1e-07
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 1 gagggagagggtagagctggccaccaagttcggcatctctttcgccgacggcaagcggga 60
|||||||| ||| ||| ||||||| ||||||| | |||| ||||||||||| ||| |||
Sbjct: 124858 gagggagaaggtggaggtggccacgaagttcgccgtctcgttcgccgacgggaaggtgga 124917
Query: 61 ggttcgaggagatncggcctacgtgcggncggngtgcgagggcag 105
| | || || || |||| ||||||||| ||| ||||||||||||
Sbjct: 124918 gatccgcggcgacccggcgtacgtgcgggcggcgtgcgagggcag 124962
Score = 58.0 bits (29), Expect = 8e-06
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 8 agggtagagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcga 67
||||| |||||||||||||||||||||| | ||||||| |||||||| || | | ||
Sbjct: 89272 agggttgagctggccaccaagttcggcaagttcttcgccggcggcaagccggggatccgc 89331
Query: 68 ggagatncggcctacgtgcggncggngtgcgagggcag 105
|| || |||| |||||||| ||| ||||||||||||
Sbjct: 89332 ggcgacccggcgtacgtgcgcgcggcgtgcgagggcag 89369
Score = 42.1 bits (21), Expect = 0.47
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 75 cggcctacgtgcggncggngtgcgagggcag 105
|||| ||||||||| ||| ||||||||||||
Sbjct: 105173 cggcgtacgtgcgggcggcgtgcgagggcag 105203
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 77.8 bits (39), Expect = 9e-12
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 14 gagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcgaggagat 73
|||||||||||||||||||||||| | |||| |||||||||||||| || || || ||
Sbjct: 15929594 gagctggccaccaagttcggcatcgcgttcgaagacggcaagcgggacgtccgcggggac 15929653
Query: 74 ncggcctacgtgcggncggngtgcgagggcag 105
|||| |||||||| ||| ||||||||||||
Sbjct: 15929654 ccggcgtacgtgcgcgcggcgtgcgagggcag 15929685
Score = 63.9 bits (32), Expect = 1e-07
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 1 gagggagagggtagagctggccaccaagttcggcatctctttcgccgacggcaagcggga 60
|||||||| ||| ||| ||||||| ||||||| | |||| ||||||||||| ||| |||
Sbjct: 15938293 gagggagaaggtggaggtggccacgaagttcgccgtctcgttcgccgacgggaaggtgga 15938352
Query: 61 ggttcgaggagatncggcctacgtgcggncggngtgcgagggcag 105
| | || || || |||| ||||||||| ||| ||||||||||||
Sbjct: 15938353 gatccgcggcgacccggcgtacgtgcgggcggcgtgcgagggcag 15938397
Score = 58.0 bits (29), Expect = 8e-06
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 8 agggtagagctggccaccaagttcggcatctctttcgccgacggcaagcgggaggttcga 67
||||| |||||||||||||||||||||| | ||||||| |||||||| || | | ||
Sbjct: 15902707 agggttgagctggccaccaagttcggcaagttcttcgccggcggcaagccggggatccgc 15902766
Query: 68 ggagatncggcctacgtgcggncggngtgcgagggcag 105
|| || |||| |||||||| ||| ||||||||||||
Sbjct: 15902767 ggcgacccggcgtacgtgcgcgcggcgtgcgagggcag 15902804
Score = 42.1 bits (21), Expect = 0.47
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 75 cggcctacgtgcggncggngtgcgagggcag 105
|||| ||||||||| ||| ||||||||||||
Sbjct: 16015380 cggcgtacgtgcgggcggcgtgcgagggcag 16015410
Score = 42.1 bits (21), Expect = 0.47
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 75 cggcctacgtgcggncggngtgcgagggcag 105
|||| ||||||||| ||| ||||||||||||
Sbjct: 15918608 cggcgtacgtgcgggcggcgtgcgagggcag 15918638
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 tggccaccaagttcggcatc 37
||||||||||||||||||||
Sbjct: 16015332 tggccaccaagttcggcatc 16015351
Score = 38.2 bits (19), Expect = 7.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 33 gcatctctttcgccgacggcaag 55
|||||||||||||||| ||||||
Sbjct: 17550686 gcatctctttcgccgaaggcaag 17550708
Score = 38.2 bits (19), Expect = 7.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 33 gcatctctttcgccgacggcaag 55
|||||||||||||||| ||||||
Sbjct: 9902523 gcatctctttcgccgaaggcaag 9902501
Score = 38.2 bits (19), Expect = 7.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 33 gcatctctttcgccgacggcaag 55
|||||||||||||||| ||||||
Sbjct: 2367584 gcatctctttcgccgaaggcaag 2367562
>emb|AL662983.3 |OSJN00181 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081G05,
complete sequence
Length = 173950
Score = 38.2 bits (19), Expect = 7.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 33 gcatctctttcgccgacggcaag 55
|||||||||||||||| ||||||
Sbjct: 31426 gcatctctttcgccgaaggcaag 31448
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 570,740
Number of Sequences: 3902068
Number of extensions: 570740
Number of successful extensions: 27757
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27351
Number of HSP's gapped (non-prelim): 398
length of query: 152
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 131
effective length of database: 17,151,101,840
effective search space: 2246794341040
effective search space used: 2246794341040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)