ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags1l02 |
|---|---|
| Clone Library Name | barley_pub |
>ENV_GALV (P21415) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 667 Score = 35.4 bits (80), Expect = 0.15 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 3/155 (1%) Frame = -1 Query: 552 KCTW*CD--LSLSK***NGSLVAM*RFRHGLISLVTLSTIASGDVSASKLGYIFLFIAFH 379 +C W L+L++ +G + F H + TLS +SGD + +L + H Sbjct: 382 RCRWGTQGKLTLTEVSGHGLCIGKVPFTHQHLCNQTLSINSSGD-------HQYLLPSNH 434 Query: 378 PRTTCKPS*SQSILPAISVTMFISLLDFQIAYQGLWMTLAARPSQTLYQ*FSGSCPSNCL 199 C S + P +S ++F DF I Q L + P + L Q + S P Sbjct: 435 SWWAC----STGLTPCLSTSVFNQTRDFCIQVQ-LIPRIYYYPEEVLLQAYDNSHPRTKR 489 Query: 198 QMM-LLLSFFSCIGVTLYVGTLRTEIRPGPFFLSQ 97 + + L L+ +G+T +GT T + GP L Q Sbjct: 490 EAVSLTLAVLLGLGITAGIGTGSTALIKGPIDLQQ 524
>YFAL_ECOLI (P45508) Hypothetical protein yfaL precursor| Length = 1250 Score = 32.7 bits (73), Expect = 0.95 Identities = 21/70 (30%), Positives = 32/70 (45%) Frame = +1 Query: 103 QEEGSWPDLRAQGAYIQGDTDAAEEGQEQHHLEAV*WA*A*ELLVQGLRGASCQGHPEAL 282 Q++G+W D Q A+ D E+G + +H + + E Q L G P+A Sbjct: 1075 QKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGI--IASLEAGYQWLPGRGVVIEPQAQ 1132 Query: 283 VCYLEVQEAD 312 V Y VQ+ D Sbjct: 1133 VIYQGVQQDD 1142
>POGZ_MOUSE (Q8BZH4) Pogo transposable element with ZNF domain| Length = 1409 Score = 31.2 bits (69), Expect = 2.8 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 7/98 (7%) Frame = -3 Query: 364 QTIVVPIHPARNLSYNVHQPLGLPNSIPRPLDDLGSSPLA-DPVPV------VLRLMPIK 206 Q +++ +PA L V QP+ P + + + + SSP+A P+ + V + P++ Sbjct: 105 QPLILTQNPAPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQ 164 Query: 205 LPPNDVALVLLQLHRCHLVCRHLAHGDPARTLLLVPAP 92 N V +VL ++ G R + LVPAP Sbjct: 165 NAMNQVGIVL-----------NVQQGQTVRPITLVPAP 191
>POGZ_HUMAN (Q7Z3K3) Pogo transposable element with ZNF domain| Length = 1410 Score = 31.2 bits (69), Expect = 2.8 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 7/98 (7%) Frame = -3 Query: 364 QTIVVPIHPARNLSYNVHQPLGLPNSIPRPLDDLGSSPLA-DPVPV------VLRLMPIK 206 Q +++ +PA L V QP+ P + + + + SSP+A P+ + V + P++ Sbjct: 105 QPLILTQNPAPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQ 164 Query: 205 LPPNDVALVLLQLHRCHLVCRHLAHGDPARTLLLVPAP 92 N V +VL ++ G R + LVPAP Sbjct: 165 NAMNQVGIVL-----------NVQQGQTVRPITLVPAP 191
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 31.2 bits (69), Expect = 2.8 Identities = 34/135 (25%), Positives = 45/135 (33%), Gaps = 25/135 (18%) Frame = -3 Query: 382 PPSDH-MQTIVVPIHPARNLSYNVHQPLGLPNSIPRPLDDLGSSPLA------------- 245 PP H +QT + HP QP GLP+ + LG SP A Sbjct: 843 PPGPHSLQTGPLLQHPGPP------QPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQ 896 Query: 244 -----------DPVPVVLRLMPIKLPPNDVALVLLQLHRCHLVCRHLAHGDPARTLLLVP 98 P+P MP PP + L + H HL+ P +P Sbjct: 897 SALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLP 956 Query: 97 APPILQEIPFLHQRH 53 PP L+ + L H Sbjct: 957 PPPALKPLSSLSTHH 971
>PHAR1_CHICK (Q801X6) Phosphatase and actin regulator 1| Length = 501 Score = 31.2 bits (69), Expect = 2.8 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = -3 Query: 379 PSDHMQTIVVPIHPARNLSYNVHQPLGLPNSIPRPLDDLGSSPLADP-VPVVLRLMPIKL 203 P DH T P + LS + QP LP P+P+ + S L DP PV L MP+KL Sbjct: 118 PGDHEDT------PVKQLSL-LKQPPALP---PKPIARIASH-LTDPGAPVKLPCMPVKL 166 Query: 202 PP 197 P Sbjct: 167 SP 168
>GRB7_MOUSE (Q03160) Growth factor receptor-bound protein 7 (GRB7 adapter| protein) (Epidermal growth factor receptor GRB-7) Length = 535 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -3 Query: 382 PPSDHMQTIVVPIHPARNLSYNVHQPLGLPNSIPRPLDDLGSSPLADPV 236 PP D ++ +PI +R L Q LP SIP P +L S P P+ Sbjct: 35 PPGDVKRSQPLPIPSSRKLREEEFQATSLP-SIPNPFPELCSPPSQKPI 82
>DPO3X_BUCAP (Q8K983) DNA polymerase III gamma subunit (EC 2.7.7.7)| Length = 363 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +2 Query: 440 IVDKVTKLIKPWRNLYIATNEPFYYYFDKLRSHYHVHLLDDYKELWSNTSEWHNET---- 607 +++K++K+ W+N+ I + +R +H+ +L Y ++W+ +NE Sbjct: 267 LLNKISKIGLEWQNILI----------EMMRFLHHIAMLKSYPKIWNQIFIKNNENEIKK 316 Query: 608 TAINNGKY 631 A NN KY Sbjct: 317 IAENNSKY 324
>ACSA_PYRAE (O93730) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 670 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +2 Query: 443 VDKVTKLIKPWRNLYIATNEPFYYYFDKLRSHYHVHLLDDYKELWSNTS---EWHNE 604 V K + KPW + A+N PFY +F R + +D + + W EW E Sbjct: 51 VAKELEWFKPWDKVLDASNPPFYKWFVGGRLNLSYLAVDRHVKTWRKNKLAIEWEGE 107
>DSCR2_HUMAN (O95456) Down syndrome critical region protein 2 (Leucine-rich| protein C21-LRP) Length = 288 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -1 Query: 222 GSCPSNCLQMMLLLSFFSCIGVTLYVGTLRTEIRPGPFFLSQRRQSFKKS 73 GSCP +Q+ +L +C VT Y + T P PF + + Q+FK S Sbjct: 155 GSCPRKNMQITIL----TCRHVTDYKTSESTGSLPSPFLRALKTQNFKDS 200
>CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog| Length = 319 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -2 Query: 125 SGQDPSSCPSAANPSRNPLSPPETPTXLRCSKS 27 S S+ P A PS NP SPP +P + S++ Sbjct: 16 SSDSASTSPDAPQPSENPPSPPTSPAAPQTSEN 48
>ADHA_RHIME (O31186) Alcohol dehydrogenase (EC 1.1.1.1)| Length = 340 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -1 Query: 168 CIGVTLYVGTLRTEIRPGPFFL 103 C GVT+Y G TE+RPG + L Sbjct: 150 CAGVTVYKGLKETEVRPGEWVL 171
>YEEZ_ECOLI (P0AD12) Protein yeeZ precursor| Length = 274 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = -3 Query: 412 VGIHLLVHRLPPSDHMQTIVVPIHPARNLSY-NVHQPLGLPNSIPRPLDDLGSSPLAD 242 +G L+ + P H+ I P HPARN+ Y + + LGL R D G + D Sbjct: 194 IGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRNSLDSGKGKIID 251
>YEEZ_ECO57 (P0AD13) Protein yeeZ precursor| Length = 274 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = -3 Query: 412 VGIHLLVHRLPPSDHMQTIVVPIHPARNLSY-NVHQPLGLPNSIPRPLDDLGSSPLAD 242 +G L+ + P H+ I P HPARN+ Y + + LGL R D G + D Sbjct: 194 IGAITLLLQAPKGGHIYNICAPAHPARNVFYPQMARLLGLEPPQFRNSLDSGKGKIID 251
>SUS2_HORVU (P31923) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 816 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +2 Query: 113 GPGRISVRKVPTYKVTPMQLKKDKSNIIWRQFDG--HEPENYWYRVCEGRAAKVIQRPWY 286 GP I V V Y + P Q DK++ + F G E ++W ++ +G ++ ++ + Sbjct: 701 GPAEIIVNGVSGYHIDPYQ--NDKASALLVGFFGKCQEDPSHWNKISQGGLQRIEEKYTW 758 Query: 287 AIWKSKRLMNI 319 ++ S+RLM + Sbjct: 759 KLY-SERLMTL 768
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 29.6 bits (65), Expect = 8.0 Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 24/110 (21%) Frame = -3 Query: 310 QPLGLPNSIPRPLDDLGSSPLA------------------------DPVPVVLRLMPIKL 203 QP GLP + LG+SP A P+P MP Sbjct: 870 QPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIK 929 Query: 202 PPNDVALVLLQLHRCHLVCRHLAHGDPARTLLLVPAPPILQEIPFLHQRH 53 PP + L + H HL+ P +P PP L+ + L H Sbjct: 930 PPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHH 979
>ATG2_MAGGR (Q51ZN8) Autophagy-related protein 2| Length = 2077 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +2 Query: 107 KKGPGRISVRKVPTYKVTPMQLKKDKSNIIWRQFDGHEPENYWYRVCE--GRAAKVIQRP 280 K R V K T K P+++K ++IW FDG++ W R E G+ + IQ Sbjct: 1525 KSAKMREVVPKEATIKKYPLKIKIRDMHLIWNLFDGYD----WQRTRETIGKTVEEIQAK 1580 Query: 281 WY 286 Y Sbjct: 1581 AY 1582
>HPT_ATEGE (P50417) Haptoglobin precursor [Contains: Haptoglobin alpha chain;| Haptoglobin beta chain] Length = 347 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/30 (53%), Positives = 18/30 (60%) Frame = -3 Query: 268 DLGSSPLADPVPVVLRLMPIKLPPNDVALV 179 D+G L D VPV R+MPI LP D A V Sbjct: 187 DIGLIKLKDKVPVNERVMPICLPSKDYAEV 216 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,393,642 Number of Sequences: 219361 Number of extensions: 2092610 Number of successful extensions: 7219 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 6686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7134 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
