Clone Information

BLAST Search Result

Clone Name	bags1j16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FKBP3_CANAL (Q59VR3) FK506-binding protein 3 (EC 5.2.1.8) (Pepti...	35	0.15
2	NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa neur...	34	0.33
3	UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-...	34	0.43
4	HANG_DROME (Q9VXG1) Zinc finger protein hangover	33	0.57
5	BUD21_YEAST (Q08492) Bud site selection protein 21 (U3 small nuc...	33	0.57
6	CLFB_STAAU (O86476) Clumping factor B precursor (Fibrinogen-bind...	33	0.74
7	CLFB_STAAN (Q7A382) Clumping factor B precursor (Fibrinogen-bind...	33	0.74
8	CLFB_STAAM (Q99R07) Clumping factor B precursor (Fibrinogen-bind...	33	0.74
9	CLFB_STAAC (Q5HCR7) Clumping factor B precursor (Fibrinogen-bind...	33	0.74
10	CLFB_STAAW (Q8NUL0) Clumping factor B precursor (Fibrinogen-bind...	33	0.97
11	CLFB_STAAS (Q6G644) Clumping factor B precursor (Fibrinogen-bind...	33	0.97
12	KEX2_CANAL (O13359) Kexin precursor (EC 3.4.21.61) (KEX2 protease)	33	0.97
13	FKBP4_CANGA (Q6FK71) FK506-binding protein 4 (EC 5.2.1.8) (Pepti...	32	1.7
14	NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-...	32	2.2
15	HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)	32	2.2
16	SPT8_YEAST (P38915) Transcription factor SPT8	31	2.8
17	HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (P...	31	2.8
18	RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2....	31	2.8
19	UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-...	31	3.7
20	NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neur...	31	3.7
21	RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) ...	30	4.8
22	ZN330_DROME (Q9VAU9) Zinc finger protein 330 homolog (Nucleolar ...	30	4.8
23	V2A_BBMV (P27462) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (...	30	6.3
24	GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p2...	30	6.3
25	YAB9_YEAST (P31380) Hypothetical 128.5 kDa ATP-dependent helicas...	30	6.3
26	FKBP4_EMENI (P0C1B0) FK506-binding protein 4 (EC 5.2.1.8) (Pepti...	30	6.3
27	CLFB_STAAR (Q6GDH2) Clumping factor B precursor (Fibrinogen-bind...	30	6.3
28	MSH5_CAEEL (Q19272) MutS protein homolog 5	30	8.2

>FKBP3_CANAL (Q59VR3) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 426

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 22/87 (25%), Positives = 34/87 (39%)
 Frame = +3

Query: 189 EPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEP 368
           E D +D  ED + E +     P       +D+TI       FV +       +      P
Sbjct: 119 EEDDEDNDEDDVSEYIVCTLSPKHQYQQTLDLTITPDEEVYFVVTGSYPIHLTGNYIEHP 178

Query: 369 DPDDTADVDMLNKEIDGEHDNEPDPDD 449
              D  D D  +++ D E+D  PD D+
Sbjct: 179 ADQDEEDYDNEDEDYDDEYDLSPDEDE 205

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>NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 857

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
 Frame = +3

Query: 81  VAAYQRLLSASSTDLGSSHSSVT----------KSVERYNVQGTQAEPDPDDAGEDFILE 230
           +AAY++LL    T   +   S+T           ++    +Q T+ EP        F+ E
Sbjct: 392 IAAYRKLLEGEETRFSAFSGSITGPIFTHRQPSVTIASTKIQKTKIEPPKLKVQHKFVEE 451

Query: 231 NVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPDPDDTADVDMLNKE 410
            ++     D+   M   ++ +    A      EQ  +K+    +E +       +   +E
Sbjct: 452 IIEETKVEDEKSEMEDALSAIAEEMAAKAQEEEQEEEKAEEEAVEEEAVSEKAAEQAAEE 511

Query: 411 IDGEHDNEPDPDDGTSEFVLESGNTME 491
            + E +   + +   S+   E G+  E
Sbjct: 512 EEKEEEEAEEEEAAKSDAAEEGGSKKE 538

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>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 1)
          Length = 3684

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 22/139 (15%)
 Frame = +3

Query: 174  QGTQAEPDPDDAGEDF----ILENVKAEPDPDDNDAM--------PID------VTIVTS 299
            Q   A P   D GE      +++ +     P++ D M        PID      V ++++
Sbjct: 2460 QANLASPVSQDTGESLQQLEVMQPLPLNSTPNEIDRMEVGEGDGAPIDQVDHEAVHLIST 2519

Query: 300  GSAGFVASTEQNAKKSSVGCLEPDPDD----TADVDMLNKEIDGEHDNEPDPDDGTSEFV 467
                   S+ QN   +++     DPD     + DVDM +   +G    +P P DG +  +
Sbjct: 2520 AQGQPDTSSIQNVSVTAIAPPVDDPDSNFQPSVDVDMSSDGAEGNQSVQPSPLDGDNNEL 2579

Query: 468  LESGNTMEVEMELRTDSTV 524
                ++ME    +R D  V
Sbjct: 2580 ----SSMEATENVRNDEQV 2594

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>HANG_DROME (Q9VXG1) Zinc finger protein hangover|
          Length = 1959

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
 Frame = +3

Query: 186  AEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLE 365
            ++ D DD GE         E D DD D    +  +      G       N K      + 
Sbjct: 1728 SDDDEDDDGE--------VESDDDDEDDDDEEDDVEEPEPVGLTVRPLMNGKSKMPPLIV 1779

Query: 366  PDPDDTAD-----VDMLNKEIDGEHDNEPDPDDGTSEFVLESGNTMEVEMELRTDST 521
               DD  D      D++ +E D   D +PDP+D   E   +  +  EVE E    ST
Sbjct: 1780 ASSDDEDDGVMPIEDIIEEEFD--EDADPDPEDAIEEVDEDDLDEGEVEDEPNVVST 1834

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>BUD21_YEAST (Q08492) Bud site selection protein 21 (U3 small nucleolar|
           RNA-associated protein 16) (U3 snoRNA-associated protein
           16)
          Length = 214

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 21/96 (21%), Positives = 39/96 (40%)
 Frame = +3

Query: 327 EQNAKKSSVGCLEPDPDDTADVDMLNKEIDGEHDNEPDPDDGTSEFVLESGNTMEVEMEL 506
           + +  ++S   +    DD   +   +KE+    D E D DD   E  L SG + EVE ++
Sbjct: 9   DADESQASASAVTDRQDDVLVISKKDKEVHSSSDEESDDDDAPQEEGLHSGKS-EVESQI 67

Query: 507 RTDSTVLKXXXXXXXXXXXIQNQKVSIDEKHMGEPD 614
                 ++            QN+  +  +K + E +
Sbjct: 68  TQREEAIRLEQSQLRSKRRKQNELYAKQKKSVNETE 103

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>CLFB_STAAU (O86476) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 913

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = +3

Query: 189 EPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEP 368
           +P+P+   +     + + EP PD +     D    +   +G  + +E ++   S    + 
Sbjct: 559 DPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDS 618

Query: 369 DPDDTADVDMLNKEIDGEHDNEPDPD---DGTSEFVLESGNTMEVEMELRTDS 518
           D D  +D D    E D + D++ D D   D  S+   +S +  + + +  +DS
Sbjct: 619 DSDSESDSD---SESDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDS 668



 Score = 31.2 bits (69), Expect = 2.8
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +3

Query: 177 GTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVG 356
           G   +P+P    E     + +  PDP+   +   D    +   +G  + +  ++   S  
Sbjct: 549 GPPVDPEPSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDS 608

Query: 357 CLEPDPDDTADVDMLNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
             + D D  +D D    + D E D++ D D D  S+   +S +  + + +  +DS
Sbjct: 609 DSDSDSDSDSDSDS-ESDSDSESDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 662



 Score = 30.0 bits (66), Expect = 6.3
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +3

Query: 192 PDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPD 371
           PDP+ + +     +   +PD D +     D    +   +   + ++ ++   S    E D
Sbjct: 566 PDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESD 625

Query: 372 PDDTADVDMLNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
            D  +D D  + + D + D++ D D D  S+   +S +  E + +  +DS
Sbjct: 626 SDSESDSDS-DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSDSESDS 674

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>CLFB_STAAN (Q7A382) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 877

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = +3

Query: 189 EPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEP 368
           +P+P+   +     + + EP PD +     D    +   +G  + +E ++   S    + 
Sbjct: 559 DPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDS 618

Query: 369 DPDDTADVDMLNKEIDGEHDNEPDPD---DGTSEFVLESGNTMEVEMELRTDS 518
           D D  +D D    E D + D++ D D   D  S+   +S +  + + +  +DS
Sbjct: 619 DSDSESDSD---SESDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDSDSESDS 668



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +3

Query: 177 GTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVG 356
           G   +P+P    E     + +  PDP+   +   D    +   +G  + +  ++   S  
Sbjct: 549 GPPVDPEPSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDS 608

Query: 357 CLEPDPDDTADVDMLNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
             + D D  +D D    + D E D++ D D D  S+   ES +  + + +  +DS
Sbjct: 609 DSDSDSDSDSDSDS-ESDSDSESDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDS 662



 Score = 30.4 bits (67), Expect = 4.8
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
 Frame = +3

Query: 192 PDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPD 371
           PDP+ + +     +   +PD D +     D    +   +   + ++ ++   S    E D
Sbjct: 566 PDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESD 625

Query: 372 PDDTADVDM-LNKEIDGEHDNEPDPD-----DGTSEFVLESGNTMEVEMELRTDS 518
            D  +D D   + + D + D+E D D     D  S+   ES +  E + E  +DS
Sbjct: 626 SDSESDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSESDSDS 680

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>CLFB_STAAM (Q99R07) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 877

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = +3

Query: 189 EPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEP 368
           +P+P+   +     + + EP PD +     D    +   +G  + +E ++   S    + 
Sbjct: 559 DPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDS 618

Query: 369 DPDDTADVDMLNKEIDGEHDNEPDPD---DGTSEFVLESGNTMEVEMELRTDS 518
           D D  +D D    E D + D++ D D   D  S+   +S +  + + +  +DS
Sbjct: 619 DSDSESDSD---SESDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDSDSESDS 668



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +3

Query: 177 GTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVG 356
           G   +P+P    E     + +  PDP+   +   D    +   +G  + +  ++   S  
Sbjct: 549 GPPVDPEPSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDS 608

Query: 357 CLEPDPDDTADVDMLNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
             + D D  +D D    + D E D++ D D D  S+   ES +  + + +  +DS
Sbjct: 609 DSDSDSDSDSDSDS-ESDSDSESDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDS 662



 Score = 30.4 bits (67), Expect = 4.8
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
 Frame = +3

Query: 192 PDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPD 371
           PDP+ + +     +   +PD D +     D    +   +   + ++ ++   S    E D
Sbjct: 566 PDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESD 625

Query: 372 PDDTADVDM-LNKEIDGEHDNEPDPD-----DGTSEFVLESGNTMEVEMELRTDS 518
            D  +D D   + + D + D+E D D     D  S+   ES +  E + E  +DS
Sbjct: 626 SDSESDSDSDSDSDSDSDSDSESDSDSDSDSDSDSDSDSESDSDSESDSESDSDS 680

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>CLFB_STAAC (Q5HCR7) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 913

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = +3

Query: 189 EPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEP 368
           +P+P+   +     + + EP PD +     D    +   +G  + +E ++   S    + 
Sbjct: 559 DPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDS 618

Query: 369 DPDDTADVDMLNKEIDGEHDNEPDPD---DGTSEFVLESGNTMEVEMELRTDS 518
           D D  +D D    E D + D++ D D   D  S+   +S +  + + +  +DS
Sbjct: 619 DSDSESDSD---SESDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDS 668



 Score = 31.2 bits (69), Expect = 2.8
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +3

Query: 177 GTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVG 356
           G   +P+P    E     + +  PDP+   +   D    +   +G  + +  ++   S  
Sbjct: 549 GPPVDPEPSPDPEPEPTPDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDS 608

Query: 357 CLEPDPDDTADVDMLNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
             + D D  +D D    + D E D++ D D D  S+   +S +  + + +  +DS
Sbjct: 609 DSDSDSDSDSDSDS-ESDSDSESDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 662



 Score = 30.0 bits (66), Expect = 6.3
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +3

Query: 192 PDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPD 371
           PDP+ + +     +   +PD D +     D    +   +   + ++ ++   S    E D
Sbjct: 566 PDPEPSPDPEPEPSPDPDPDSDSDSDSGSDSDSGSDSDSESDSDSDSDSDSDSDSDSESD 625

Query: 372 PDDTADVDMLNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
            D  +D D  + + D + D++ D D D  S+   +S +  E + +  +DS
Sbjct: 626 SDSESDSDS-DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSDSESDS 674

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>CLFB_STAAW (Q8NUL0) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 907

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = +3

Query: 177 GTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVG 356
           G   +P+P    E     +   EP PD   +   D    +   +G  + ++ ++   S  
Sbjct: 549 GPPVDPEPSPDPEPEPSPDPDPEPTPDPEPSPDPDPDSDSDSDSGSDSDSDSDSDSDSDS 608

Query: 357 CLEPDPDDTADVDM-LNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
               D D  +D D   + E D + D+E D D D  SE   +S +  + + +  +DS
Sbjct: 609 DSGSDSDSDSDSDSESDSESDSDSDSESDSDSDSDSESDSDSDSDSDSDSDSDSDS 664

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>CLFB_STAAS (Q6G644) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 905

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
 Frame = +3

Query: 177 GTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVG 356
           G   +P+P    E     +   EP PD   +   D    +   +G  + ++ ++   S  
Sbjct: 549 GPPVDPEPSPDPEPEPSPDPDPEPTPDPEPSPDPDPDSDSDSDSGSDSDSDSDSDSDSDS 608

Query: 357 CLEPDPDDTADVDM-LNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
               D D  +D D   + E D + D+E D D D  SE   +S +  + + +  +DS
Sbjct: 609 DSGSDSDSDSDSDSESDSESDSDSDSESDSDSDSDSESDSDSDSDSDSDSDSDSDS 664

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>KEX2_CANAL (O13359) Kexin precursor (EC 3.4.21.61) (KEX2 protease)|
          Length = 924

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +3

Query: 285 TIVTSGSAGFVASTEQNAKKSSVGCLEPDPDDTADVDMLNKEIDGEHDNEPDPDDGTSE 461
           +I TS +A   +S EQ+    S      + D  +D D  NK+ +GE DN+ D D+G  +
Sbjct: 717 SITTSQTASLTSSNEQHQPTES------NSDSDSDTDDENKQ-EGEEDNDNDNDNGNKK 768

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>FKBP4_CANGA (Q6FK71) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 398

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
 Frame = +3

Query: 159 ERYNVQGTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNA 338
           E  +V     + D DD GED   E V     P+      ID+TI       F+ +     
Sbjct: 98  EDEDVDEDDEDDDEDDDGEDEYEECVVVTLSPETRCQQAIDITIAPEEDVQFLVTGSYTI 157

Query: 339 KKSSVGCLEPDPDDTADV-----------DMLNKEIDGEHDNEPDPDDGTSE 461
             +      P  +   D+           D L++EI  E D+E D D+ +SE
Sbjct: 158 SLTGNYVKHPFDEPLEDLYSDEDSEEYSDDELDQEI--EEDDELDHDEASSE 207

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>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
 Frame = +3

Query: 132  SHSSVTKSVERYNVQGTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAG 311
            S S+  KS     VQ T+AEP   +A        VK E D  ++D+M   +    +   G
Sbjct: 809  SQSAELKSALNLQVQ-TKAEPYETEAKPTESTTQVKTEVDSKEDDSMERLMDRAEAADMG 867

Query: 312  FVASTE-QNAKKSSVGCLEPDPDDTADVDMLNKEIDGEHDNEPDPDDGTSEFVLESGNT 485
            +        A++ S    +PD D +A     ++E+DGE D       G+   +L    T
Sbjct: 868  YAPPQNISQARQES----QPDNDSSATCS-ADEEVDGEPDRPRMYSFGSRPSLLNQAGT 921

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>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)|
          Length = 303

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
 Frame = +3

Query: 132 SHSSVTKSV------ERYNVQGTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIV 293
           SH+S T SV          ++G + + D +D  E+  +  +K     D  +         
Sbjct: 77  SHTSKTTSVFFSGYKVEQPIEGDEMDLDSEDEEEELNIPVIKENGKADGKEEQ------- 129

Query: 294 TSGSAGFVASTEQNAKKSSVGCLEPDPDDTADVDMLNKEIDGEHDNEPDPDDG 452
                  VA+T   A KSS+G  +   DD+ D D  ++  D + D+  D D+G
Sbjct: 130 -KNQEKAVAAT---ASKSSLGLEKKSKDDSDDSDE-DESDDSDEDDSDDSDEG 177

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>SPT8_YEAST (P38915) Transcription factor SPT8|
          Length = 602

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +3

Query: 204 DAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPDPDDT 383
           D  +D ++ N   + + DD + +           +G    ++Q+ + +  G  + + DD 
Sbjct: 2   DEVDDILINNQVVDDEEDDEEML-----------SGLENDSKQDLEGNDDGGEDEEDDDD 50

Query: 384 ADVDMLNKEIDGEHDNEPDPDDGTSE 461
            D D  + E + E D+E + DDG  +
Sbjct: 51  DDEDDDDDEDEREDDDEQEDDDGEDD 76

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>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein|
            hyperplastic discs)
          Length = 2885

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
 Frame = +3

Query: 129  SSHSSVTKSVERY-NVQGTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGS 305
            +SH+   + +E   N  G Q     D++  DF   + + E D DDN +   +  +  S  
Sbjct: 1628 NSHNQDDELIENQRNEDGMQ----DDESDNDFTFNDAETESDSDDNQS---NQEVQRSVQ 1680

Query: 306  AGFVASTEQNAKKSSVGCLEPDPDDTADVDMLNKEIDGEHDNEPDPDDGTSEFVLESGNT 485
            AG    +E +     V  LE +  D++      +E DG  D E   DD + EF     N 
Sbjct: 1681 AGATVGSENDI---GVLFLEDESGDSS-----AQEEDGSEDGE--SDDQSDEF-----NF 1725

Query: 486  MEVEMELRTDST 521
             E ++E R+ ++
Sbjct: 1726 NEQQLERRSTNS 1737

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>RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.7.7.6)|
          Length = 396

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 6/141 (4%)
 Frame = +3

Query: 114 STDLGSSHSSVTKSVERYNVQGTQAEPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIV 293
           S+  GS  S  ++SV+       Q E   DD  E    +N + E  P D D      +  
Sbjct: 2   SSKKGSKTSKTSRSVK-------QTEEYYDDDAE---FQNSEDEYPPSDEDLDNSGGSDD 51

Query: 294 TSGSAGFVASTEQNAKKSSVGCLEPDPDDTADVDMLNKE----ID--GEHDNEPDPDDGT 455
            +  +G ++    +        L+ DPDD A+ D    E    ID  GE ++  DP +  
Sbjct: 52  ENTQSGGLSDAPDDELGEDSATLDIDPDDEAEYDTDGDEKFNPIDEMGEPEDPDDPSEQE 111

Query: 456 SEFVLESGNTMEVEMELRTDS 518
            + V + G+     +E+  D+
Sbjct: 112 EDEVEDLGSEDVDNVEIEDDA 132

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>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)|
            (Ubiquitin-protein ligase 2)
          Length = 3658

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +3

Query: 282  VTIVTSGSAGFVASTEQNAKKSSVGCLEPDPDD----TADVDMLNKEIDGEHDNEPDPDD 449
            V +++S       S  QN   +++     DPD     + DVDM +   +G    +P P D
Sbjct: 2498 VHLISSAQGQSDTSGIQNVSVTAIPPPVDDPDSNFQPSVDVDMSSDGAEGNQSVQPSPLD 2557

Query: 450  GTSEFVLESGNTMEVEMELRTDSTV 524
            G +  +    ++ME   ++R D  V
Sbjct: 2558 GDNNEL----SSMEATQDVRNDEQV 2578

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>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
           (Fragment)
          Length = 644

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 27/162 (16%)
 Frame = +3

Query: 81  VAAYQRLLSASSTDLGSSHSSVTKSVERY---------NVQGTQAEPDPDDAGEDFILEN 233
           +AAY++LL    T   +   S+T  +  +          +Q T+ E         F+ E 
Sbjct: 183 IAAYRKLLEGEETRFSTFSGSITGPLYTHRQPSVTISSKIQKTKVEAPKLKVQHKFVEEI 242

Query: 234 VKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQN------------------AKKSSVGC 359
           ++     D+   M   +T +    A  V   E+                   AKKS V  
Sbjct: 243 IEETKVEDEKSEMEDALTAIAEELAVSVKEEEKEEEAEGKEEEQEAEEEVAAAKKSPVKA 302

Query: 360 LEPDPDDTADVDMLNKEIDGEHDNEPDPDDGTSEFVLESGNT 485
             P+  +        KE +G+ + E + D+G      E G +
Sbjct: 303 TTPEIKEEEG----EKEEEGQEEEEEEEDEGVKSDQAEEGGS 340

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>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)|
          Length = 777

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = +3

Query: 273 PIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPDPDDTADVDMLNKEIDGEHDNEPDPDDG 452
           P+ +T+   G     A+ E   +K  + CL+P PD    V +   E D      P P  G
Sbjct: 278 PVKITLTEIGPPVMTATHETIPEKQDL-CLKPSPDTVPTVTVSEPEDDSPGSVTP-PSSG 335

Query: 453 TSEFVLES---GNTMEVEM 500
           T     ES   G+  E E+
Sbjct: 336 TEPSAAESQGKGSVSEDEL 354

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>ZN330_DROME (Q9VAU9) Zinc finger protein 330 homolog (Nucleolar autoantigen 36|
           homolog)
          Length = 315

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 408 EIDGEHDNEPDPDDGTSEFVLESGNTMEVEMELRTDSTVLK 530
           E DG++D+E D DD   E   E   T E E E  TD    K
Sbjct: 278 ESDGDYDDESDEDDDDDE---EEDETTESEPEKETDKKATK 315

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>V2A_BBMV (P27462) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 810

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
 Frame = +3

Query: 81  VAAYQRLLSASSTDLGSSHSSVTKSVERYNVQGTQAEPDPDDAGEDFILE------NVKA 242
           V ++Q LL  +S+ + S  SSV   ++RY  +  + E   D + E F+L         + 
Sbjct: 12  VPSFQWLLGPTSSQVESFDSSVAGWIKRYEDESKRPESTVDGSCESFVLAVKPVMIGGQC 71

Query: 243 EPDPDDND--AMPIDVTIVTSGSAG--------FVASTEQNAKKSSVGCLEPD---PDDT 383
           EP  D        ++VT + SG  G               + + S V   E D   P+DT
Sbjct: 72  EPAYDQAKWAETCLNVTNLASGLTGVRLIPLPEMARMIYLDEEDSFVDESEVDDWYPEDT 131

Query: 384 AD-VDMLNKEIDGEHDNEPDPDDGTSEFVLESGNTMEVEMELRTDSTV 524
           +D  + L+ +    H N  +P++   E + +S  T+E E E R ++ V
Sbjct: 132 SDGFEYLSADGSDYHQNS-EPEE---EVLDKSNGTLESE-EARHETDV 174

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>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa|
           golgin) (Golgin-245) (Protein 72.1)
          Length = 2230

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 348 SVGCLEPDPDDTADVDMLNKEIDGEHDNEPDPDDGTSEFVLES 476
           +V  L+P P      ++  KE + E D EP  +DGTS   LE+
Sbjct: 241 NVDVLKPLPQLEPQAEVFTKEENPESDGEPVVEDGTSVKTLET 283

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>YAB9_YEAST (P31380) Hypothetical 128.5 kDa ATP-dependent helicase in ATS1-TPD3|
           intergenic region (EC 3.6.1.-)
          Length = 1131

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 363 EPDPDDTADVDMLNKEIDGEHDNEPDPDDGTSEFVLESGNT 485
           E D  +  D D  ++E D E+D+  D DD   EFV    NT
Sbjct: 501 EDDDYEEEDEDYNDEEEDVEYDDGDDDDDDDDEFVATRKNT 541

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>FKBP4_EMENI (P0C1B0) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 478

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +3

Query: 189 EPDPDDAGEDFIL---ENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGC 359
           + D +DA  D  L   E V    DP+ N   P+D+T V  G   F   T  +    +   
Sbjct: 148 DDDDEDAESDEGLDLDEMVVCTLDPERNYQQPLDIT-VAEGERVFFKVTGTHTIYLTGNY 206

Query: 360 LEPDPDDTADVDMLNKEIDGEHDNEPDPDD 449
           + P  +   D D  + E + ++D  PD D+
Sbjct: 207 VMPIDEPRDDYDEDDDEDEEDYDLSPDEDE 236

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>CLFB_STAAR (Q6GDH2) Clumping factor B precursor (Fibrinogen-binding protein B)|
           (Fibrinogen receptor B)
          Length = 873

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
 Frame = +3

Query: 189 EPDPDDAGEDFILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEP 368
           EP+P+   +       + EP PD   +   D    +   +G  + +  ++   S    + 
Sbjct: 555 EPEPEPTPDPEPSPEPEPEPTPDPEPSPEPDPDSDSDSDSGSDSDSGSDSDSDSDSDSDS 614

Query: 369 DPDDTADVDMLNKEIDGEHDNEPDPD-DGTSEFVLESGNTMEVEMELRTDS 518
           D D  +D      E D + D++ D D D  S+   +S +  + E +  +DS
Sbjct: 615 DSDSNSD-----SESDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSDSDS 660

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>MSH5_CAEEL (Q19272) MutS protein homolog 5|
          Length = 1369

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 18/89 (20%), Positives = 39/89 (43%)
 Frame = +3

Query: 222  ILENVKAEPDPDDNDAMPIDVTIVTSGSAGFVASTEQNAKKSSVGCLEPDPDDTADVDML 401
            +L+ +KAE   D+   +  D+ +V +   GF+A+ E   K+      E      + +  +
Sbjct: 831  LLKEIKAEVSNDNEKQLVEDMDVVLADEDGFMAAVESFVKRKKTSFCE------SSMRNV 884

Query: 402  NKEIDGEHDNEPDPDDGTSEFVLESGNTM 488
            ++EI+ E      P   +   +    N++
Sbjct: 885  SEEIEKERSEASTPASKSRSTITARSNSV 913


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,114,243
Number of Sequences: 219361
Number of extensions: 1703368
Number of successful extensions: 4728
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4698
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result