Clone Information

BLAST Search Result

Clone Name	bags1j16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483192.1\| Oryza sativa (japonica cultivar-group), mRNA	58	4e-05
2	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	4e-05
3	dbj\|AP003892.3\| Oryza sativa (japonica cultivar-group) genomic D...	58	4e-05
4	dbj\|AK101328.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
5	gb\|AY110296.1\| Zea mays CL11152_1 mRNA sequence	48	0.037
6	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	44	0.57
7	gb\|AC139168.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.57
8	gb\|AC135208.3\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.57
9	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.57
10	emb\|AL626762.10\| Mouse DNA sequence from clone RP23-68F3 on chro...	44	0.57
11	emb\|BX571979.8\| Zebrafish DNA sequence from clone DKEYP-51C11 in...	42	2.3
12	gb\|AC147038.2\| Pan troglodytes BAC clone RP43-112D23 from 7, com...	40	8.9
13	gb\|AC016769.10\| Homo sapiens BAC clone RP11-561N12 from 7, compl...	40	8.9
14	gb\|AC127335.4\| Mus musculus BAC clone RP23-150G24 from 8, comple...	40	8.9
15	gb\|AC183832.3\| Pan troglodytes BAC clone CH251-260G12 from chrom...	40	8.9
16	emb\|AL356219.12\| Human DNA sequence from clone RP11-430C15 on ch...	40	8.9
17	emb\|AL162730.26\| Human DNA sequence from clone RP11-265B8 on chr...	40	8.9
18	emb\|BX571872.1\| Photorhabdus luminescens subsp. laumondii TTO1 c...	40	8.9
19	gb\|AC011477.5\| Homo sapiens chromosome 19 clone CTC-559E9, compl...	40	8.9
20	gb\|AC008739.5\| Homo sapiens chromosome 19 clone CITB-E1_2542C24,...	40	8.9
21	gb\|AC123912.1\| Homo sapiens chromosome 19 clone RP11-678G14, com...	40	8.9
22	gb\|AC182431.3\| Pan troglodytes BAC clone CH251-185D5 from chromo...	40	8.9
23	gb\|AC016625.6\| Homo sapiens chromosome 19 clone LLNL-F_190D7, co...	40	8.9
24	gb\|AC092364.3\| Homo sapiens chromosome 19 clone RP11-420K14, com...	40	8.9
25	gb\|AF006715.1\|AF006715 Anguilla anguilla cytochrome b (cytb) gen...	40	8.9
26	gb\|AF006714.1\|AF006714 Anguilla anguilla cytochrome b (cytb) gen...	40	8.9
27	gb\|AC009110.10\| Homo sapiens chromosome 16 clone RP11-467O15, co...	40	8.9
28	gb\|AC011503.4\|AC011503 Homo sapiens chromosome 19 clone CTB-92J2...	40	8.9
29	gb\|AC157523.2\| Pan troglodytes BAC clone CH251-526G6 from chromo...	40	8.9
30	gb\|AC147103.3\| Pan troglodytes BAC clone RP43-31L11 from chromos...	40	8.9
31	gb\|AC079304.6\| Homo sapiens BAC clone RP11-389K20 from 2, comple...	40	8.9
32	gb\|AC074093.6\| Homo sapiens BAC clone RP11-206I11 from 2, comple...	40	8.9
33	gb\|AC078815.22\| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Ca...	40	8.9
34	gb\|AC011482.4\|AC011482 Homo sapiens chromosome 19 clone CTB-135N...	40	8.9
35	gb\|AC010636.6\|AC010636 Homo sapiens chromosome 19 clone CTD-2332...	40	8.9
36	dbj\|AP007233.1\| Anguilla anguilla mitochondrial DNA, complete ge...	40	8.9
37	dbj\|BA000011.4\| Thermoplasma volcanium GSS1 DNA, complete genome	40	8.9
38	gb\|AC012627.4\|AC012627 Homo sapiens chromosome 19 clone CTD-2130...	40	8.9
39	gb\|AC010620.4\|AC010620 Homo sapiens chromosome 19 clone CTD-3233...	40	8.9
40	gb\|AC121114.10\| Mus musculus chromosome 15, clone RP23-63M19, co...	40	8.9
41	emb\|BX000707.9\| Zebrafish DNA sequence from clone DKEY-187I8, co...	40	8.9
42	dbj\|AP004467.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	40	8.9
43	gb\|M19377.1\|PF3COMNY Bacteriophage Pf3 from Pseudomonas aerugino...	40	8.9
44	gb\|M11912.1\|PF3COMN Bacteriophage Pf3 from Pseudomonas aeruginos...	40	8.9
45	dbj\|AB021776.1\| Anguilla anguilla mitochondrial cytb gene for cy...	40	8.9

>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                       
Query: 17  tgttgtcggtcacaagcttggagggcgatcgagttcactggcaagttcccgtgtgttgcc 76
           |||||| || ||||| ||||||||  |||| ||||||||||||||| | ||||||||| |
Sbjct: 892 tgttgttggccacaaacttggaggaggatccagttcactggcaagtgctcgtgtgttgtc 951

                                                
Query: 77  aggggtagctgcttatcagcgtctcttgagtgcatca 113
            |||   ||||||||| ||||| | |||| |||||||
Sbjct: 952 tgggtctgctgcttataagcgttttttgaatgcatca 988



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 343  aaagctctgttggttgcctagaacctgatcctgatgat 380
            ||||| ||| |||||||||||||||||| |||||||||
Sbjct: 1251 aaagcactgctggttgcctagaacctgaccctgatgat 1288



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 237  aaggcggaaccagacccagatgataatga 265
            |||| ||| ||||||||||||||||||||
Sbjct: 1109 aaggtggagccagacccagatgataatga 1137

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                            
Query: 17       tgttgtcggtcacaagcttggagggcgatcgagttcactggcaagttcccgtgtgttgcc 76
                |||||| || ||||| ||||||||  |||| ||||||||||||||| | ||||||||| |
Sbjct: 24722439 tgttgttggccacaaacttggaggaggatccagttcactggcaagtgctcgtgtgttgtc 24722498

                                                     
Query: 77       aggggtagctgcttatcagcgtctcttgagtgcatca 113
                 |||   ||||||||| ||||| | |||| |||||||
Sbjct: 24722499 tgggtctgctgcttataagcgttttttgaatgcatca 24722535



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 343      aaagctctgttggttgcctagaacctgatcctgatgat 380
                ||||| ||| |||||||||||||||||| |||||||||
Sbjct: 24722798 aaagcactgctggttgcctagaacctgaccctgatgat 24722835



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 237      aaggcggaaccagacccagatgataatga 265
                |||| ||| ||||||||||||||||||||
Sbjct: 24722656 aaggtggagccagacccagatgataatga 24722684

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>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                         
Query: 17    tgttgtcggtcacaagcttggagggcgatcgagttcactggcaagttcccgtgtgttgcc 76
             |||||| || ||||| ||||||||  |||| ||||||||||||||| | ||||||||| |
Sbjct: 23240 tgttgttggccacaaacttggaggaggatccagttcactggcaagtgctcgtgtgttgtc 23299

                                                  
Query: 77    aggggtagctgcttatcagcgtctcttgagtgcatca 113
              |||   ||||||||| ||||| | |||| |||||||
Sbjct: 23300 tgggtctgctgcttataagcgttttttgaatgcatca 23336



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 343   aaagctctgttggttgcctagaacctgatcctgatgat 380
             ||||| ||| |||||||||||||||||| |||||||||
Sbjct: 23599 aaagcactgctggttgcctagaacctgaccctgatgat 23636



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 237   aaggcggaaccagacccagatgataatga 265
             |||| ||| ||||||||||||||||||||
Sbjct: 23457 aaggtggagccagacccagatgataatga 23485

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>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                        
Query: 17   tgttgtcggtcacaagcttggagggcgatcgagttcactggcaagttcccgtgtgttgcc 76
            |||||| || ||||| ||||||||  |||| ||||||||||||||| | ||||||||| |
Sbjct: 1229 tgttgttggccacaaacttggaggaggatccagttcactggcaagtgctcgtgtgttgtc 1288

                                                 
Query: 77   aggggtagctgcttatcagcgtctcttgagtgcatca 113
             |||   ||||||||| ||||| | |||| |||||||
Sbjct: 1289 tgggtctgctgcttataagcgttttttgaatgcatca 1325



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 343  aaagctctgttggttgcctagaacctgatcctgatgat 380
            ||||| ||| |||||||||||||||||| |||||||||
Sbjct: 1588 aaagcactgctggttgcctagaacctgaccctgatgat 1625



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 237  aaggcggaaccagacccagatgataatga 265
            |||| ||| ||||||||||||||||||||
Sbjct: 1446 aaggtggagccagacccagatgataatga 1474

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>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 357 tgcctagaacctgatcctgatgat 380
           ||||||||||||||||||||||||
Sbjct: 143 tgcctagaacctgatcctgatgat 166



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 362 agaacctgatcctgatgatact 383
           ||||||||||||||||||||||
Sbjct: 388 agaacctgatcctgatgatact 409

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 214     aggattttattctggaaaatgt 235
               ||||||||||||||||||||||
Sbjct: 8860714 aggattttattctggaaaatgt 8860693

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>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02,
             complete sequence
          Length = 126027

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   aggattttattctggaaaatgt 235
             ||||||||||||||||||||||
Sbjct: 51602 aggattttattctggaaaatgt 51581

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>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
              complete sequence
          Length = 112265

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 214    aggattttattctggaaaatgt 235
              ||||||||||||||||||||||
Sbjct: 103867 aggattttattctggaaaatgt 103846

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 214     aggattttattctggaaaatgt 235
               ||||||||||||||||||||||
Sbjct: 8858549 aggattttattctggaaaatgt 8858528

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>emb|AL626762.10| Mouse DNA sequence from clone RP23-68F3 on chromosome 4, complete
              sequence
          Length = 228767

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 169    atgtgcaaggtacacaagcaga 190
              ||||||||||||||||||||||
Sbjct: 116449 atgtgcaaggtacacaagcaga 116428

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>emb|BX571979.8| Zebrafish DNA sequence from clone DKEYP-51C11 in linkage group 13,
              complete sequence
          Length = 165275

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 286    caattgtgacatcaggatcagcagg 310
              |||| ||||||||||||||||||||
Sbjct: 121180 caatagtgacatcaggatcagcagg 121204

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>gb|AC147038.2| Pan troglodytes BAC clone RP43-112D23 from 7, complete sequence
          Length = 192615

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 214  aggattttattctggaaaat 233
            ||||||||||||||||||||
Sbjct: 4084 aggattttattctggaaaat 4103

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>gb|AC016769.10| Homo sapiens BAC clone RP11-561N12 from 7, complete sequence
          Length = 203572

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    tgcatcatcaacagatttgg 126
              ||||||||||||||||||||
Sbjct: 194931 tgcatcatcaacagatttgg 194950

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>gb|AC127335.4| Mus musculus BAC clone RP23-150G24 from 8, complete sequence
          Length = 215910

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   agcagaatgccaagaaaagctctg 351
             |||||||||||||| |||||||||
Sbjct: 71452 agcagaatgccaaggaaagctctg 71475

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>gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chromosome 7, complete
             sequence
          Length = 179012

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 61451 tgcatcatcaacagatttgg 61432

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>emb|AL356219.12| Human DNA sequence from clone RP11-430C15 on chromosome 9 Contains part
              of the PIP5K1B gene for phosphatidylinositol-4-phosphate
              5-kinase, type I, beta (MSS4, STM7) and the 5' end of a
              novel gene, complete sequence
          Length = 115469

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 213    gaggattttattctggaaaatgtg 236
              ||||||||| ||||||||||||||
Sbjct: 114752 gaggattttcttctggaaaatgtg 114729

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>emb|AL162730.26| Human DNA sequence from clone RP11-265B8 on chromosome 9 Contains the
            3' end of the PIP5K1B gene for
            phosphatidylinositol-4-phosphate 5-kinase, type I, beta
            (MSS4, STM7), the PRKACG gene for protein kinase,
            cAMP-dependent, catalytic, gamma (KAPG), the FRDA gene
            for Friedreich ataxia (FA, FARR), a novel gene and three
            CpG islands, complete sequence
          Length = 171381

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 213  gaggattttattctggaaaatgtg 236
            ||||||||| ||||||||||||||
Sbjct: 1283 gaggattttcttctggaaaatgtg 1260

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>emb|BX571872.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              14/17
          Length = 348498

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    agtgcatcatcaacagattt 124
              ||||||||||||||||||||
Sbjct: 226709 agtgcatcatcaacagattt 226690

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>gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, complete sequence
          Length = 178710

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 22489 tgcatcatcaacagatttgg 22470

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>gb|AC008739.5| Homo sapiens chromosome 19 clone CITB-E1_2542C24, complete sequence
          Length = 235532

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 107  tgcatcatcaacagatttgg 126
            ||||||||||||||||||||
Sbjct: 4661 tgcatcatcaacagatttgg 4642

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>gb|AC123912.1| Homo sapiens chromosome 19 clone RP11-678G14, complete sequence
          Length = 103476

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 97706 tgcatcatcaacagatttgg 97725

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>gb|AC182431.3| Pan troglodytes BAC clone CH251-185D5 from chromosome 19, complete
              sequence
          Length = 159441

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    tgcatcatcaacagatttgg 126
              ||||||||||||||||||||
Sbjct: 143174 tgcatcatcaacagatttgg 143193

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>gb|AC016625.6| Homo sapiens chromosome 19 clone LLNL-F_190D7, complete sequence
          Length = 28154

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 13040 tgcatcatcaacagatttgg 13021

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>gb|AC092364.3| Homo sapiens chromosome 19 clone RP11-420K14, complete sequence
          Length = 170470

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  tgcatcatcaacagatttgg 126
            ||||||||||||||||||||
Sbjct: 3952 tgcatcatcaacagatttgg 3971

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>gb|AF006715.1|AF006715 Anguilla anguilla cytochrome b (cytb) gene, mitochondrial gene
           encoding mitochondrial protein, complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 417 ggtgagcatgataatgaacc 436
           ||||||||||||||||||||
Sbjct: 711 ggtgagcatgataatgaacc 692

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>gb|AF006714.1|AF006714 Anguilla anguilla cytochrome b (cytb) gene, mitochondrial gene
           encoding mitochondrial protein, complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 417 ggtgagcatgataatgaacc 436
           ||||||||||||||||||||
Sbjct: 711 ggtgagcatgataatgaacc 692

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>gb|AC009110.10| Homo sapiens chromosome 16 clone RP11-467O15, complete sequence
          Length = 188763

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    atactgcagatgttgacatg 398
              ||||||||||||||||||||
Sbjct: 111836 atactgcagatgttgacatg 111855

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>gb|AC011503.4|AC011503 Homo sapiens chromosome 19 clone CTB-92J24, complete sequence
          Length = 104082

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 70674 tgcatcatcaacagatttgg 70693

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>gb|AC157523.2| Pan troglodytes BAC clone CH251-526G6 from chromosome unknown, complete
             sequence
          Length = 165776

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   atactgcagatgttgacatg 398
             ||||||||||||||||||||
Sbjct: 79802 atactgcagatgttgacatg 79821

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>gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromosome 7, complete
             sequence
          Length = 222089

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   aggattttattctggaaaat 233
             ||||||||||||||||||||
Sbjct: 76223 aggattttattctggaaaat 76204

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>gb|AC079304.6| Homo sapiens BAC clone RP11-389K20 from 2, complete sequence
          Length = 188132

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    agaatgccaagaaaagctct 350
              ||||||||||||||||||||
Sbjct: 178251 agaatgccaagaaaagctct 178232

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>gb|AC074093.6| Homo sapiens BAC clone RP11-206I11 from 2, complete sequence
          Length = 155182

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   ggtacacaagcagaacctga 196
             ||||||||||||||||||||
Sbjct: 17208 ggtacacaagcagaacctga 17227

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>gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163475

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   gtgaggattttattctggaa 230
             ||||||||||||||||||||
Sbjct: 77251 gtgaggattttattctggaa 77270

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>gb|AC011482.4|AC011482 Homo sapiens chromosome 19 clone CTB-135N1, complete sequence
          Length = 129108

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 82409 tgcatcatcaacagatttgg 82390

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>gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332E11, complete sequence
          Length = 179393

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 22388 tgcatcatcaacagatttgg 22407

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>dbj|AP007233.1| Anguilla anguilla mitochondrial DNA, complete genome
          Length = 16683

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   ggtgagcatgataatgaacc 436
             ||||||||||||||||||||
Sbjct: 15142 ggtgagcatgataatgaacc 15123

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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 397    tgcttaacaaggagatcgat 416
              ||||||||||||||||||||
Sbjct: 385774 tgcttaacaaggagatcgat 385793

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>gb|AC012627.4|AC012627 Homo sapiens chromosome 19 clone CTD-2130K10, complete sequence
          Length = 100925

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 88151 tgcatcatcaacagatttgg 88170



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tgcatcatcaacagatttgg 126
             ||||||||||||||||||||
Sbjct: 21357 tgcatcatcaacagatttgg 21376

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>gb|AC010620.4|AC010620 Homo sapiens chromosome 19 clone CTD-3233P19, complete sequence
          Length = 156835

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    tgcatcatcaacagatttgg 126
              ||||||||||||||||||||
Sbjct: 137061 tgcatcatcaacagatttgg 137042



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  tgcatcatcaacagatttgg 126
            ||||||||||||||||||||
Sbjct: 2721 tgcatcatcaacagatttgg 2740

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>gb|AC121114.10| Mus musculus chromosome 15, clone RP23-63M19, complete sequence
          Length = 337658

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   ctaaatctgtggagagatat 167
             ||||||||||||||||||||
Sbjct: 87889 ctaaatctgtggagagatat 87908

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>emb|BX000707.9| Zebrafish DNA sequence from clone DKEY-187I8, complete sequence
          Length = 194542

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    atcaggatcagcaggttttg 315
              ||||||||||||||||||||
Sbjct: 157692 atcaggatcagcaggttttg 157711

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>dbj|AP004467.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06K11, TM0002,
              complete sequence
          Length = 106023

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    aacctgatcctgatgatggt 452
              ||||||||||||||||||||
Sbjct: 103906 aacctgatcctgatgatggt 103925

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>gb|M19377.1|PF3COMNY Bacteriophage Pf3 from Pseudomonas aeruginosa (New York strain),
            complete genome
          Length = 5833

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  atgaacctgatcctgatgat 449
            ||||||||||||||||||||
Sbjct: 1161 atgaacctgatcctgatgat 1180

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>gb|M11912.1|PF3COMN Bacteriophage Pf3 from Pseudomonas aeruginosa (Nijmegen strain),
            complete genome
          Length = 5833

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  atgaacctgatcctgatgat 449
            ||||||||||||||||||||
Sbjct: 1161 atgaacctgatcctgatgat 1180

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>dbj|AB021776.1| Anguilla anguilla mitochondrial cytb gene for cytochrome b,
           complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 417 ggtgagcatgataatgaacc 436
           ||||||||||||||||||||
Sbjct: 711 ggtgagcatgataatgaacc 692


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,617,270
Number of Sequences: 3902068
Number of extensions: 5617270
Number of successful extensions: 124802
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124541
Number of HSP's gapped (non-prelim): 261
length of query: 653
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 630
effective length of database: 17,143,297,704
effective search space: 10800277553520
effective search space used: 10800277553520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result