| Clone Name | bags1j11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL929070.15| Mouse DNA sequence from clone RP23-199L4 on chromosome 2, complete sequence Length = 143861 Score = 44.1 bits (22), Expect = 0.066 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 ctgagcaagactacaatctatg 64 |||||||||||||||||||||| Sbjct: 115613 ctgagcaagactacaatctatg 115592
>emb|AL355606.14| Human DNA sequence from clone RP11-90I7 on chromosome X Contains the gene for hepatocellular carcinoma-associated antigen 127 (HCA127) (FLJ12856, FLJ12856, KIAA1166), complete sequence Length = 163283 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aacccactgagcaagactac 56 |||||||||||||||||||| Sbjct: 103128 aacccactgagcaagactac 103147
>gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 137018 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 tgaagccaccaaaaaatgt 87 ||||||||||||||||||| Sbjct: 97575 tgaagccaccaaaaaatgt 97593
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 ctgatgaagccaccaaaaaatgt 87 ||||| ||||||||||||||||| Sbjct: 17444 ctgataaagccaccaaaaaatgt 17466
>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062D09, complete sequence Length = 160244 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 tctatgctgatgaagccac 77 ||||||||||||||||||| Sbjct: 9254 tctatgctgatgaagccac 9236
>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0014O08 map near S2137, complete sequence Length = 134033 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 tctatgctgatgaagccac 77 ||||||||||||||||||| Sbjct: 1483 tctatgctgatgaagccac 1501
>gb|BC082580.1| Mus musculus TWIST neighbor, mRNA (cDNA clone IMAGE:30653070), **** WARNING: chimeric clone **** Length = 3207 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aagccaccaaaaaatgtca 89 ||||||||||||||||||| Sbjct: 2215 aagccaccaaaaaatgtca 2197
>ref|NM_172253.2| Mus musculus TWIST neighbor (Twistnb), mRNA Length = 2324 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aagccaccaaaaaatgtca 89 ||||||||||||||||||| Sbjct: 2242 aagccaccaaaaaatgtca 2224
>gb|AC164616.4| Mus musculus BAC clone RP23-322A5 from chromosome 12, complete sequence Length = 204974 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aagccaccaaaaaatgtca 89 ||||||||||||||||||| Sbjct: 91206 aagccaccaaaaaatgtca 91224
>emb|AL358492.19| Human DNA sequence from clone RP11-340B24 on chromosome 1 Contains a heat shock 10kDa protein 1 (chaperonin 10) (HSPE1) pseudogene, the gene for a novel protein (FLJ37118, FLJ37833) and a cofilin 1 (non-muscle) (CFL1) pseudogene, complete sequence Length = 135992 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 ctgcgcagccaagaagcca 28 ||||||||||||||||||| Sbjct: 80349 ctgcgcagccaagaagcca 80367
>ref|XM_970222.1| PREDICTED: Tribolium castaneum similar to CG3344-PA (LOC664210), mRNA Length = 1314 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 tgaagccaccaaaaaatgt 87 ||||||||||||||||||| Sbjct: 131 tgaagccaccaaaaaatgt 113
>gb|AY208121.1| Sus scrofa myostatin gene, complete cds Length = 167404 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 aacccactgagcaagacta 55 ||||||||||||||||||| Sbjct: 164420 aacccactgagcaagacta 164438
>dbj|AK153090.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830122F02 product:TWIST neighbor, full insert sequence Length = 3215 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aagccaccaaaaaatgtca 89 ||||||||||||||||||| Sbjct: 2232 aagccaccaaaaaatgtca 2214
>dbj|AK160682.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched library, clone:3010005O05 product:TWIST neighbor, full insert sequence Length = 2342 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aagccaccaaaaaatgtca 89 ||||||||||||||||||| Sbjct: 2234 aagccaccaaaaaatgtca 2216
>dbj|AK016638.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933403K24 product:hypothetical protein, full insert sequence Length = 2347 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aagccaccaaaaaatgtca 89 ||||||||||||||||||| Sbjct: 2239 aagccaccaaaaaatgtca 2221
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 tctatgctgatgaagccac 77 ||||||||||||||||||| Sbjct: 8590317 tctatgctgatgaagccac 8590335
>gb|AC146315.3| Otolemur garnettii clone CH256-282O14, complete sequence Length = 197172 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 ctgatgaagccaccaaaaaatgt 87 ||||| ||||||||||||||||| Sbjct: 17444 ctgataaagccaccaaaaaatgt 17466
>emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, complete sequence Length = 321304 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 tgaagccaccaaaaaatgt 87 ||||||||||||||||||| Sbjct: 217879 tgaagccaccaaaaaatgt 217897
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 tctatgctgatgaagccac 77 ||||||||||||||||||| Sbjct: 8661080 tctatgctgatgaagccac 8661098
>gb|AC160112.2| Mus musculus BAC clone RP24-80F17 from chromosome 12, complete sequence Length = 230823 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aagccaccaaaaaatgtca 89 ||||||||||||||||||| Sbjct: 221459 aagccaccaaaaaatgtca 221441 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 813,103 Number of Sequences: 3902068 Number of extensions: 813103 Number of successful extensions: 56771 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56698 Number of HSP's gapped (non-prelim): 73 length of query: 94 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 73 effective length of database: 17,151,101,840 effective search space: 1252030434320 effective search space used: 1252030434320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)