ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1j11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL929070.15| Mouse DNA sequence from clone RP23-199L4 on chr... 44 0.066
2emb|AL355606.14| Human DNA sequence from clone RP11-90I7 on chro... 40 1.0
3gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson U... 38 4.1
4gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 38 4.1
5gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.1
6gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.1
7gb|BC082580.1| Mus musculus TWIST neighbor, mRNA (cDNA clone IMA... 38 4.1
8ref|NM_172253.2| Mus musculus TWIST neighbor (Twistnb), mRNA 38 4.1
9gb|AC164616.4| Mus musculus BAC clone RP23-322A5 from chromosome... 38 4.1
10emb|AL358492.19| Human DNA sequence from clone RP11-340B24 on ch... 38 4.1
11ref|XM_970222.1| PREDICTED: Tribolium castaneum similar to CG334... 38 4.1
12gb|AY208121.1| Sus scrofa myostatin gene, complete cds 38 4.1
13dbj|AK153090.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 38 4.1
14dbj|AK160682.1| Mus musculus 12 days embryo head cDNA, RIKEN ful... 38 4.1
15dbj|AK016638.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 4.1
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.1
17gb|AC146315.3| Otolemur garnettii clone CH256-282O14, complete s... 38 4.1
18emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, com... 38 4.1
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.1
20gb|AC160112.2| Mus musculus BAC clone RP24-80F17 from chromosome... 38 4.1

>emb|AL929070.15| Mouse DNA sequence from clone RP23-199L4 on chromosome 2, complete
              sequence
          Length = 143861

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 43     ctgagcaagactacaatctatg 64
              ||||||||||||||||||||||
Sbjct: 115613 ctgagcaagactacaatctatg 115592



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>emb|AL355606.14| Human DNA sequence from clone RP11-90I7 on chromosome X Contains the gene
              for hepatocellular carcinoma-associated antigen 127
              (HCA127) (FLJ12856, FLJ12856, KIAA1166), complete sequence
          Length = 163283

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     aacccactgagcaagactac 56
              ||||||||||||||||||||
Sbjct: 103128 aacccactgagcaagactac 103147



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>gb|AC152927.1| Tribolium castaneum  BAC T.cast_C19N19 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 137018

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    tgaagccaccaaaaaatgt 87
             |||||||||||||||||||
Sbjct: 97575 tgaagccaccaaaaaatgt 97593



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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 65    ctgatgaagccaccaaaaaatgt 87
             ||||| |||||||||||||||||
Sbjct: 17444 ctgataaagccaccaaaaaatgt 17466



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>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0062D09, complete sequence
          Length = 160244

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 59   tctatgctgatgaagccac 77
            |||||||||||||||||||
Sbjct: 9254 tctatgctgatgaagccac 9236



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>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0014O08 map near S2137, complete sequence
          Length = 134033

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 59   tctatgctgatgaagccac 77
            |||||||||||||||||||
Sbjct: 1483 tctatgctgatgaagccac 1501



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>gb|BC082580.1| Mus musculus TWIST neighbor, mRNA (cDNA clone IMAGE:30653070), ****
            WARNING: chimeric clone ****
          Length = 3207

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   aagccaccaaaaaatgtca 89
            |||||||||||||||||||
Sbjct: 2215 aagccaccaaaaaatgtca 2197



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>ref|NM_172253.2| Mus musculus TWIST neighbor (Twistnb), mRNA
          Length = 2324

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   aagccaccaaaaaatgtca 89
            |||||||||||||||||||
Sbjct: 2242 aagccaccaaaaaatgtca 2224



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>gb|AC164616.4| Mus musculus BAC clone RP23-322A5 from chromosome 12, complete sequence
          Length = 204974

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    aagccaccaaaaaatgtca 89
             |||||||||||||||||||
Sbjct: 91206 aagccaccaaaaaatgtca 91224



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>emb|AL358492.19| Human DNA sequence from clone RP11-340B24 on chromosome 1 Contains a
             heat shock 10kDa protein 1 (chaperonin 10) (HSPE1)
             pseudogene, the gene for a novel protein (FLJ37118,
             FLJ37833) and a cofilin 1 (non-muscle) (CFL1) pseudogene,
             complete sequence
          Length = 135992

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    ctgcgcagccaagaagcca 28
             |||||||||||||||||||
Sbjct: 80349 ctgcgcagccaagaagcca 80367



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>ref|XM_970222.1| PREDICTED: Tribolium castaneum similar to CG3344-PA (LOC664210),
           mRNA
          Length = 1314

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 69  tgaagccaccaaaaaatgt 87
           |||||||||||||||||||
Sbjct: 131 tgaagccaccaaaaaatgt 113



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>gb|AY208121.1| Sus scrofa myostatin gene, complete cds
          Length = 167404

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     aacccactgagcaagacta 55
              |||||||||||||||||||
Sbjct: 164420 aacccactgagcaagacta 164438



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>dbj|AK153090.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830122F02 product:TWIST neighbor, full
            insert sequence
          Length = 3215

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   aagccaccaaaaaatgtca 89
            |||||||||||||||||||
Sbjct: 2232 aagccaccaaaaaatgtca 2214



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>dbj|AK160682.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched
            library, clone:3010005O05 product:TWIST neighbor, full
            insert sequence
          Length = 2342

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   aagccaccaaaaaatgtca 89
            |||||||||||||||||||
Sbjct: 2234 aagccaccaaaaaatgtca 2216



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>dbj|AK016638.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933403K24 product:hypothetical protein,
            full insert sequence
          Length = 2347

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 71   aagccaccaaaaaatgtca 89
            |||||||||||||||||||
Sbjct: 2239 aagccaccaaaaaatgtca 2221



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 59      tctatgctgatgaagccac 77
               |||||||||||||||||||
Sbjct: 8590317 tctatgctgatgaagccac 8590335



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>gb|AC146315.3| Otolemur garnettii clone CH256-282O14, complete sequence
          Length = 197172

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 65    ctgatgaagccaccaaaaaatgt 87
             ||||| |||||||||||||||||
Sbjct: 17444 ctgataaagccaccaaaaaatgt 17466



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>emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, complete sequence
          Length = 321304

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 69     tgaagccaccaaaaaatgt 87
              |||||||||||||||||||
Sbjct: 217879 tgaagccaccaaaaaatgt 217897



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 59      tctatgctgatgaagccac 77
               |||||||||||||||||||
Sbjct: 8661080 tctatgctgatgaagccac 8661098



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>gb|AC160112.2| Mus musculus BAC clone RP24-80F17 from chromosome 12, complete sequence
          Length = 230823

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     aagccaccaaaaaatgtca 89
              |||||||||||||||||||
Sbjct: 221459 aagccaccaaaaaatgtca 221441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 813,103
Number of Sequences: 3902068
Number of extensions: 813103
Number of successful extensions: 56771
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56698
Number of HSP's gapped (non-prelim): 73
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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