ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
2dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
3dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
4dbj|AK108036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
5ref|NM_196588.1| Oryza sativa (japonica cultivar-group) putative... 48 0.035
6gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.035
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.035
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.035
9gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725... 46 0.14
10gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 46 0.14
11gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, compl... 46 0.14
12dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
13dbj|AK067034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
14gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
15gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
16gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 44 0.54
17emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.54
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.54
20gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
21emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete ... 42 2.1
22emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 42 2.1
23gb|DQ241376.1| Fundulus heteroclitus estrogen receptor-related r... 42 2.1
24dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
25dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
26dbj|AK107437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
27dbj|AK068205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
28gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete se... 42 2.1
29gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F1... 42 2.1
30gb|AC135667.5| Mus musculus BAC clone RP24-536G18 from chromosom... 40 8.5
31gb|AE010415.1| Methanopyrus kandleri AV19 section 114 of 157 of ... 40 8.5
32gb|AE010414.1| Methanopyrus kandleri AV19 section 113 of 157 of ... 40 8.5
33ref|NM_196586.1| Oryza sativa (japonica cultivar-group) putative... 40 8.5
34ref|NM_196641.1| Oryza sativa (japonica cultivar-group) hypothet... 40 8.5
35ref|NM_196615.1| Oryza sativa (japonica cultivar-group) putative... 40 8.5
36gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
37gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 8.5
38gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 8.5
39gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 8.5
40gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, comp... 40 8.5
41gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.5
42gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 8.5
43gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome... 40 8.5
44ref|XM_389725.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 8.5
45gb|AC137921.2| Oryza sativa chromosome 3 BAC OSJNBa0027H16 genom... 40 8.5
46gb|AF143772.2| Mycobacterium avium strain 2151 glycopeptidolipid... 40 8.5
47emb|AL356005.9| Human DNA sequence from clone RP11-54B9 on chrom... 40 8.5
48gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.5
49gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
50gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
51gb|AF218774.1|AF218774 Lycopersicon esculentum putative water ch... 40 8.5
52gb|AC161247.2| Mus musculus BAC clone RP24-447J22 from chromosom... 40 8.5
53gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 40 8.5
54gb|AY596366.1| Hainanjapyx jianfengensis 18S ribosomal RNA gene,... 40 8.5
55gb|AF302086.1| Pseudomonas aeruginosa plasmid pVRP193 integron I... 40 8.5
56dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
57gb|AE004848.1| Pseudomonas aeruginosa PAO1, section 409 of 529 o... 40 8.5
58gb|AC123964.3| Macaca mulatta clone CH250-505G9, complete sequence 40 8.5
59dbj|AP002959.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.5
60gb|AY840979.1| Bifidobacterium breve prophage-like element, comp... 40 8.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                            
Query: 236      agagcgaggccggggcggacgtcacgttcctcgtgtccggcgagtcctttgccgcgcata 295
                ||||| || |||| || |||||||||||| |||||||||||||||| || |||||||| |
Sbjct: 27301291 agagcaagaccggcgccgacgtcacgttcgtcgtgtccggcgagtcgttcgccgcgcaca 27301232

                                                      
Query: 296      agagcatactggccgcgaggtctccggttttcatggcc 333
                ||   ||||||||| ||||||| |||||||||||||||
Sbjct: 27301231 aggctatactggcctcgaggtcgccggttttcatggcc 27301194



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 143/178 (80%)
 Strand = Plus / Minus

                                                                            
Query: 257      tcacgttcctcgtgtccggcgagtcctttgccgcgcataagagcatactggccgcgaggt 316
                ||||||||||||| ||||||||| |  | || ||||| | | || | || ||||||||||
Sbjct: 27298278 tcacgttcctcgtctccggcgagcctgtcgcggcgcacaggtgcgtgctcgccgcgaggt 27298219

                                                                            
Query: 317      ctccggttttcatggcccagttctttggagacatgaaggagaaatgctcgcaccgtgtgg 376
                | ||||| ||||||||| || | || || |||||||||||||||  ||||||  |  | |
Sbjct: 27298218 cgccggtgttcatggccgagctgttcggcgacatgaaggagaaagactcgcagagcatcg 27298159

                                                                          
Query: 377      agatcgaggacatggaggctgtggtgttcaaggcattgcttcacttcatctacaccga 434
                ||||| ||||||||||||| | ||| |||| | |  |||| |||||||||||||||||
Sbjct: 27298158 agatcaaggacatggaggcagaggtcttcaggaccctgctccacttcatctacaccga 27298101



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 505      gacagatacgggctggacaggctcaaggtcatctgcgaaggcaagctc 552
                ||||| ||||||||||| ||||||||| ||||||||||  ||||||||
Sbjct: 27301001 gacaggtacgggctggagaggctcaagctcatctgcgagagcaagctc 27300954



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                           
Query: 325     ttcatggcccagttctttggagacatgaaggagaaatgctcgcaccgtgtggagatcgag 384
               ||||||||  |||||||||||  |||||||||||   |||| ||  ||||||||||| ||
Sbjct: 7853544 ttcatggctgagttctttggacccatgaaggagagtagctcacagtgtgtggagatcaag 7853485

                          
Query: 385     gacatggaggc 395
               ||||| |||||
Sbjct: 7853484 gacatagaggc 7853474



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 373      gtggagatcgaggacatggag 393
                |||||||||||||||||||||
Sbjct: 26879276 gtggagatcgaggacatggag 26879296
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>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0637D03
          Length = 180159

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                          
Query: 236    agagcgaggccggggcggacgtcacgttcctcgtgtccggcgagtcctttgccgcgcata 295
              ||||| || |||| || |||||||||||| |||||||||||||||| || |||||||| |
Sbjct: 158307 agagcaagaccggcgccgacgtcacgttcgtcgtgtccggcgagtcgttcgccgcgcaca 158248

                                                    
Query: 296    agagcatactggccgcgaggtctccggttttcatggcc 333
              ||   ||||||||| ||||||| |||||||||||||||
Sbjct: 158247 aggctatactggcctcgaggtcgccggttttcatggcc 158210



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 143/178 (80%)
 Strand = Plus / Minus

                                                                          
Query: 257    tcacgttcctcgtgtccggcgagtcctttgccgcgcataagagcatactggccgcgaggt 316
              ||||||||||||| ||||||||| |  | || ||||| | | || | || ||||||||||
Sbjct: 155294 tcacgttcctcgtctccggcgagcctgtcgcggcgcacaggtgcgtgctcgccgcgaggt 155235

                                                                          
Query: 317    ctccggttttcatggcccagttctttggagacatgaaggagaaatgctcgcaccgtgtgg 376
              | ||||| ||||||||| || | || || |||||||||||||||  ||||||  |  | |
Sbjct: 155234 cgccggtgttcatggccgagctgttcggcgacatgaaggagaaagactcgcagagcatcg 155175

                                                                        
Query: 377    agatcgaggacatggaggctgtggtgttcaaggcattgcttcacttcatctacaccga 434
              ||||| ||||||||||||| | ||| |||| | |  |||| |||||||||||||||||
Sbjct: 155174 agatcaaggacatggaggcagaggtcttcaggaccctgctccacttcatctacaccga 155117



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 505    gacagatacgggctggacaggctcaaggtcatctgcgaaggcaagctc 552
              ||||| ||||||||||| ||||||||| ||||||||||  ||||||||
Sbjct: 158017 gacaggtacgggctggagaggctcaagctcatctgcgagagcaagctc 157970
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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                         
Query: 236   agagcgaggccggggcggacgtcacgttcctcgtgtccggcgagtcctttgccgcgcata 295
             ||||| || |||| || |||||||||||| |||||||||||||||| || |||||||| |
Sbjct: 44118 agagcaagaccggcgccgacgtcacgttcgtcgtgtccggcgagtcgttcgccgcgcaca 44059

                                                   
Query: 296   agagcatactggccgcgaggtctccggttttcatggcc 333
             ||   ||||||||| ||||||| |||||||||||||||
Sbjct: 44058 aggctatactggcctcgaggtcgccggttttcatggcc 44021



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 143/178 (80%)
 Strand = Plus / Minus

                                                                         
Query: 257   tcacgttcctcgtgtccggcgagtcctttgccgcgcataagagcatactggccgcgaggt 316
             ||||||||||||| ||||||||| |  | || ||||| | | || | || ||||||||||
Sbjct: 41105 tcacgttcctcgtctccggcgagcctgtcgcggcgcacaggtgcgtgctcgccgcgaggt 41046

                                                                         
Query: 317   ctccggttttcatggcccagttctttggagacatgaaggagaaatgctcgcaccgtgtgg 376
             | ||||| ||||||||| || | || || |||||||||||||||  ||||||  |  | |
Sbjct: 41045 cgccggtgttcatggccgagctgttcggcgacatgaaggagaaagactcgcagagcatcg 40986

                                                                       
Query: 377   agatcgaggacatggaggctgtggtgttcaaggcattgcttcacttcatctacaccga 434
             ||||| ||||||||||||| | ||| |||| | |  |||| |||||||||||||||||
Sbjct: 40985 agatcaaggacatggaggcagaggtcttcaggaccctgctccacttcatctacaccga 40928



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 505   gacagatacgggctggacaggctcaaggtcatctgcgaaggcaagctc 552
             ||||| ||||||||||| ||||||||| ||||||||||  ||||||||
Sbjct: 43828 gacaggtacgggctggagaggctcaagctcatctgcgagagcaagctc 43781
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>dbj|AK108036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C07, full
           insert sequence
          Length = 1482

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 236 agagcgaggccggggcggacgtcacgttcctcgtgtccggcgagtcctttgccgcgcata 295
           ||||| || |||| || |||||||||||| |||||||||||||||| || |||||||| |
Sbjct: 613 agagcaagaccggcgccgacgtcacgttcgtcgtgtccggcgagtcgttcgccgcgcaca 672

                                                 
Query: 296 agagcatactggccgcgaggtctccggttttcatggcc 333
           ||   ||||||||| ||||||| |||||||||||||||
Sbjct: 673 aggctatactggcctcgaggtcgccggttttcatggcc 710



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 505 gacagatacgggctggacaggctcaaggtcatctgcgaaggcaagctc 552
           ||||| ||||||||||| ||||||||| ||||||||||  ||||||||
Sbjct: 903 gacaggtacgggctggagaggctcaagctcatctgcgagagcaagctc 950
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>ref|NM_196588.1| Oryza sativa (japonica cultivar-group) putative speckle-type
           protein (OSJNBa0072A12.28), mRNA
          Length = 855

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 379 atcgaggacatggaggctgtggtgttcaaggcattgcttcacttcatctacaccga 434
           ||||| |||||||||||   |||||||||||| ||||| | |||||| ||||||||
Sbjct: 463 atcgacgacatggaggcgcaggtgttcaaggcgttgctccgcttcatgtacaccga 518
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>gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0072A12,
              complete sequence
          Length = 149347

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                      
Query: 379    atcgaggacatggaggctgtggtgttcaaggcattgcttcacttcatctacaccga 434
              ||||| |||||||||||   |||||||||||| ||||| | |||||| ||||||||
Sbjct: 130956 atcgacgacatggaggcgcaggtgttcaaggcgttgctccgcttcatgtacaccga 131011



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 399    ggtgttcaaggcattgcttcacttcatctacaccga 434
              |||||||||||| ||||| |||||| | ||||||||
Sbjct: 125438 ggtgttcaaggcgttgctccacttcgtgtacaccga 125403
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 379      atcgaggacatggaggctgtggtgttcaaggcattgcttcacttcatctacaccga 434
                ||||| |||||||||||   |||||||||||| ||||| | |||||| ||||||||
Sbjct: 14658494 atcgacgacatggaggcgcaggtgttcaaggcgttgctccgcttcatgtacaccga 14658549



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 400      gtgttcaaggcattgcttcacttcatctacac 431
                |||||||||||  ||||| |||||||||||||
Sbjct: 14949353 gtgttcaaggctctgcttgacttcatctacac 14949384



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 379      atcgaggacatggaggctgtggtgttcaaggc 410
                ||||| ||||||||||||  ||||||||||||
Sbjct: 14758183 atcgacgacatggaggctcaggtgttcaaggc 14758214



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 399      ggtgttcaaggcattgcttcacttcatctacaccga 434
                |||||||||||| ||||| |||||| | ||||||||
Sbjct: 14652976 ggtgttcaaggcgttgctccacttcgtgtacaccga 14652941
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 379      atcgaggacatggaggctgtggtgttcaaggcattgcttcacttcatctacaccga 434
                ||||| |||||||||||   |||||||||||| ||||| | |||||| ||||||||
Sbjct: 14666735 atcgacgacatggaggcgcaggtgttcaaggcgttgctccgcttcatgtacaccga 14666790



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 400      gtgttcaaggcattgcttcacttcatctacac 431
                |||||||||||  ||||| |||||||||||||
Sbjct: 14957594 gtgttcaaggctctgcttgacttcatctacac 14957625



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 379      atcgaggacatggaggctgtggtgttcaaggc 410
                ||||| ||||||||||||  ||||||||||||
Sbjct: 14766424 atcgacgacatggaggctcaggtgttcaaggc 14766455



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 399      ggtgttcaaggcattgcttcacttcatctacaccga 434
                |||||||||||| ||||| |||||| | ||||||||
Sbjct: 14661217 ggtgttcaaggcgttgctccacttcgtgtacaccga 14661182
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>gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725 orthologous region
          Length = 108553

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 400   gtgttcaaggcattgcttcacttcatctacaccga 434
             |||||||||||  |||| |||||||||||||||||
Sbjct: 90654 gtgttcaaggccctgctccacttcatctacaccga 90688



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 400   gtgttcaaggcattgcttcacttcatctacaccga 434
             ||||||||||| ||||| || ||||||||||||||
Sbjct: 53993 gtgttcaaggctttgctccatttcatctacaccga 53959
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 240     cgaggccggggcggacgtcacgttcct 266
               ||||||||| |||||||||||||||||
Sbjct: 1437199 cgaggccggcgcggacgtcacgttcct 1437173
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>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence
          Length = 154814

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 342   tggagacatgaaggagaaatgct 364
             |||||||||||||||||||||||
Sbjct: 61181 tggagacatgaaggagaaatgct 61203
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>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0431E05
          Length = 146091

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 325   ttcatggcccagttctttggagacatgaaggagaaatgctcgcaccgtgtggagatcgag 384
             ||||||||  |||||||||||  |||||||||||   |||| ||  ||||||||||| ||
Sbjct: 67926 ttcatggctgagttctttggacccatgaaggagagtagctcacagtgtgtggagatcaag 67867

                        
Query: 385   gacatggaggc 395
             ||||| |||||
Sbjct: 67866 gacatagaggc 67856
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>dbj|AK067034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089M24, full
           insert sequence
          Length = 1951

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 325 ttcatggcccagttctttggagacatgaaggagaaatgctcgcaccgtgtggagatcgag 384
           ||||||||  |||||||||||  |||||||||||   |||| ||  ||||||||||| ||
Sbjct: 923 ttcatggctgagttctttggacccatgaaggagagtagctcacagtgtgtggagatcaag 982

                      
Query: 385 gacatggaggc 395
           ||||| |||||
Sbjct: 983 gacatagaggc 993
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>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0064H09, complete sequence
          Length = 146742

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 413  tgcttcacttcatctacaccgatacc 438
            ||||||| ||||||||||||||||||
Sbjct: 6307 tgcttcagttcatctacaccgatacc 6282
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>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0082P17, complete sequence
          Length = 157539

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 413    tgcttcacttcatctacaccgatacc 438
              ||||||| ||||||||||||||||||
Sbjct: 113925 tgcttcagttcatctacaccgatacc 113900
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 135     catcgaggtcctcaaggagctg 156
               ||||||||||||||||||||||
Sbjct: 2782014 catcgaggtcctcaaggagctg 2782035
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 73     ggccggcgcgcgctggccgcgtcggc 98
              |||||||||||||||||||| |||||
Sbjct: 299480 ggccggcgcgcgctggccgcctcggc 299455



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 73     ggccggcgcgcgctggccgcgtcgg 97
              |||||||||||||||||||| ||||
Sbjct: 301439 ggccggcgcgcgctggccgcctcgg 301415
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 413      tgcttcacttcatctacaccgatacc 438
                ||||||| ||||||||||||||||||
Sbjct: 26703849 tgcttcagttcatctacaccgatacc 26703824



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 402      gttcaaggcattgcttcacttcatctacaccga 434
                |||||||||  |||| |||||||||||||||||
Sbjct: 23307348 gttcaaggccatgctccacttcatctacaccga 23307380
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 413      tgcttcacttcatctacaccgatacc 438
                ||||||| ||||||||||||||||||
Sbjct: 27028912 tgcttcagttcatctacaccgatacc 27028887



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 402      gttcaaggcattgcttcacttcatctacaccga 434
                |||||||||  |||| |||||||||||||||||
Sbjct: 23617258 gttcaaggccatgctccacttcatctacaccga 23617290
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>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034K24, complete sequence
          Length = 142852

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 402   gttcaaggcattgcttcacttcatctacaccga 434
             |||||||||  |||| |||||||||||||||||
Sbjct: 79627 gttcaaggccatgctccacttcatctacaccga 79595
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>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16
          Length = 123385

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 242   aggccggggcggacgtcacgttcct 266
             |||||||||||||||| ||||||||
Sbjct: 77381 aggccggggcggacgtgacgttcct 77357
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>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 242    aggccggggcggacgtcacgttcct 266
              |||||||||||||||| ||||||||
Sbjct: 213209 aggccggggcggacgtgacgttcct 213185
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>gb|DQ241376.1| Fundulus heteroclitus estrogen receptor-related receptor alpha
            (ERRalpha) mRNA, complete cds
          Length = 1617

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 379  atcgaggacatggaggctgtg 399
            |||||||||||||||||||||
Sbjct: 1191 atcgaggacatggaggctgtg 1211
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>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBb0065C04
          Length = 165270

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 373  gtggagatcgaggacatggag 393
            |||||||||||||||||||||
Sbjct: 3037 gtggagatcgaggacatggag 3057
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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0051O02
          Length = 169532

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 373    gtggagatcgaggacatggag 393
              |||||||||||||||||||||
Sbjct: 133902 gtggagatcgaggacatggag 133922
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>dbj|AK107437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B01, full
           insert sequence
          Length = 1358

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 402 gttcaaggcattgcttcacttcatctacaccga 434
           |||||||||  |||| |||||||||||||||||
Sbjct: 808 gttcaaggccatgctccacttcatctacaccga 840
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>dbj|AK068205.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148O09, full
           insert sequence
          Length = 535

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 373 gtggagatcgaggacatggag 393
           |||||||||||||||||||||
Sbjct: 118 gtggagatcgaggacatggag 138
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>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence
          Length = 77605

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 402   gttcaaggcattgcttcacttcatctacaccga 434
             |||||||||  |||| |||||||||||||||||
Sbjct: 72539 gttcaaggccatgctccacttcatctacaccga 72507
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>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete
             sequence
          Length = 70311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 402   gttcaaggcattgcttcacttcatctacaccga 434
             |||||||||  |||| |||||||||||||||||
Sbjct: 65234 gttcaaggccatgctccacttcatctacaccga 65202
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>gb|AC135667.5| Mus musculus BAC clone RP24-536G18 from chromosome 13, complete sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 323    ttttcatggcccagttctttggag 346
              |||||||||||||||||| |||||
Sbjct: 139938 ttttcatggcccagttctctggag 139961
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>gb|AE010415.1| Methanopyrus kandleri AV19 section 114 of 157 of the complete genome
          Length = 11829

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   ggccgcggtcgtcggccggc 79
            ||||||||||||||||||||
Sbjct: 8541 ggccgcggtcgtcggccggc 8560
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>gb|AE010414.1| Methanopyrus kandleri AV19 section 113 of 157 of the complete genome
          Length = 12092

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    cgcgtcggcgttcctccggggcga 113
             ||||||||||||||||| ||||||
Sbjct: 10729 cgcgtcggcgttcctcctgggcga 10752
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>ref|NM_196586.1| Oryza sativa (japonica cultivar-group) putative speckle-type
           protein (OSJNBa0072A12.26), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 399 ggtgttcaaggcattgcttcacttcatctacaccga 434
           |||||||||||| ||||| |||||| | ||||||||
Sbjct: 741 ggtgttcaaggcgttgctccacttcgtgtacaccga 776
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>ref|NM_196641.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0012D19.2), mRNA
          Length = 1845

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 400 gtgttcaaggcattgcttcacttcatctacac 431
           |||||||||||  ||||| |||||||||||||
Sbjct: 718 gtgttcaaggctctgcttgacttcatctacac 749
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>ref|NM_196615.1| Oryza sativa (japonica cultivar-group) putative speckle-type
           protein (OSJNBa0073D04.27), mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 379 atcgaggacatggaggctgtggtgttcaaggc 410
           ||||| ||||||||||||  ||||||||||||
Sbjct: 601 atcgacgacatggaggctcaggtgttcaaggc 632
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>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            nbxb0012D19, complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 400  gtgttcaaggcattgcttcacttcatctacac 431
            |||||||||||  ||||| |||||||||||||
Sbjct: 7972 gtgttcaaggctctgcttgacttcatctacac 8003
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 378     gatcgaggacatggaggctgtggt 401
               |||||||||||| |||||||||||
Sbjct: 1044627 gatcgaggacatcgaggctgtggt 1044650
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     ctcggcctgcacctcgccga 227
               ||||||||||||||||||||
Sbjct: 1349299 ctcggcctgcacctcgccga 1349318
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 61      gccgcggtcgtcggccggcgcgcgctgg 88
               |||||||||| ||||| |||||||||||
Sbjct: 5459636 gccgcggtcgccggccagcgcgcgctgg 5459663
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>gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, complete sequence
          Length = 239361

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    acatggaggctgtggtgttc 405
              ||||||||||||||||||||
Sbjct: 201315 acatggaggctgtggtgttc 201334
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 68       tcgtcggccggcgcgcgctg 87
                ||||||||||||||||||||
Sbjct: 21707658 tcgtcggccggcgcgcgctg 21707639
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 587    ctctggctcttgccgagcagcacg 610
              ||||||||||||||| ||||||||
Sbjct: 838788 ctctggctcttgccgcgcagcacg 838811
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>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence
          Length = 260989

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   acatggaggctgtggtgttc 405
             ||||||||||||||||||||
Sbjct: 29759 acatggaggctgtggtgttc 29778
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>ref|XM_389725.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09549.1)
           partial mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 233 tgcagagcgaggccggggcggacg 256
           ||||||||||||||| ||||||||
Sbjct: 617 tgcagagcgaggccgaggcggacg 640
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>gb|AC137921.2| Oryza sativa chromosome 3 BAC OSJNBa0027H16 genomic sequence, complete
             sequence
          Length = 163108

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tcgtcggccggcgcgcgctg 87
             ||||||||||||||||||||
Sbjct: 95903 tcgtcggccggcgcgcgctg 95884
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>gb|AF143772.2| Mycobacterium avium strain 2151 glycopeptidolipid biosynthesis and
             daunorubicin resistance gene clusters and insertion
             sequences IS1601, IS1245 and IS1348, complete sequence
          Length = 71286

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gcctgcacctcgccgagctc 231
             ||||||||||||||||||||
Sbjct: 60100 gcctgcacctcgccgagctc 60081
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>emb|AL356005.9| Human DNA sequence from clone RP11-54B9 on chromosome 1 Contains a
             pseudogene similar to flavin-containing monooxygenase
             proteins, a ribosomal protein L4 (RPL4) pseudogene and the
             5' end of a pseudogene similar to flavin-containing
             monooxygenase proteins, complete sequence
          Length = 118425

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tatcagcatctccaagtgtt 31
             ||||||||||||||||||||
Sbjct: 91658 tatcagcatctccaagtgtt 91639
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    aaggccgcggtcgtcggccg 77
             ||||||||||||||||||||
Sbjct: 77632 aaggccgcggtcgtcggccg 77613
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>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04,
             complete sequence
          Length = 155372

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 379   atcgaggacatggaggctgtggtgttcaaggc 410
             ||||| ||||||||||||  ||||||||||||
Sbjct: 83332 atcgacgacatggaggctcaggtgttcaaggc 83363
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>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20,
              complete sequence
          Length = 139421

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 400    gtgttcaaggcattgcttcacttcatctacac 431
              |||||||||||  ||||| |||||||||||||
Sbjct: 129131 gtgttcaaggctctgcttgacttcatctacac 129162
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>gb|AF218774.1|AF218774 Lycopersicon esculentum putative water channel protein (Aqp2) mRNA,
           complete cds
          Length = 937

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 398 tggtgttcaaggcattgctt 417
           ||||||||||||||||||||
Sbjct: 310 tggtgttcaaggcattgctt 329
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>gb|AC161247.2| Mus musculus BAC clone RP24-447J22 from chromosome 12, complete
             sequence
          Length = 159391

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 407   aggcattgcttcacttcatctaca 430
             ||||||| ||||||||||||||||
Sbjct: 81781 aggcatttcttcacttcatctaca 81804
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 182     aagaggtgccggtgccatcctcaa 205
               |||||| |||||||||||||||||
Sbjct: 1008610 aagaggagccggtgccatcctcaa 1008587
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>gb|AY596366.1| Hainanjapyx jianfengensis 18S ribosomal RNA gene, complete sequence
          Length = 2579

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   gctggccgcgtcggcgttcc 103
            ||||||||||||||||||||
Sbjct: 2517 gctggccgcgtcggcgttcc 2536
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>gb|AF302086.1| Pseudomonas aeruginosa plasmid pVRP193 integron In72 DNA integrase
           IntI (intI), 6'-Ib' aminoglycoside acetyltransferase
           (aacA4), and metallo-beta-lactamase (blaVIM-2) genes,
           complete cds
          Length = 3481

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  ccggcgcgcgctggccgcgtcggc 98
           ||||| ||||||||||||||||||
Sbjct: 225 ccggctcgcgctggccgcgtcggc 248
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 68       tcgtcggccggcgcgcgctg 87
                ||||||||||||||||||||
Sbjct: 21700687 tcgtcggccggcgcgcgctg 21700668
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>gb|AE004848.1| Pseudomonas aeruginosa PAO1, section 409 of 529 of the complete
            genome
          Length = 12021

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 139  gaggtcctcaaggagctgcc 158
            ||||||||||||||||||||
Sbjct: 7697 gaggtcctcaaggagctgcc 7716
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>gb|AC123964.3| Macaca mulatta clone CH250-505G9, complete sequence
          Length = 102927

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 182   aagaggtgccggtgccatcctcaa 205
             |||||| |||||||||||||||||
Sbjct: 80829 aagaggagccggtgccatcctcaa 80806
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>dbj|AP002959.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-158K18, complete
              sequence
          Length = 179604

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    ggttttcatggcccagttct 340
              ||||||||||||||||||||
Sbjct: 112004 ggttttcatggcccagttct 112023
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>gb|AY840979.1| Bifidobacterium breve prophage-like element, complete sequence
          Length = 28155

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   gagctgcctgatacgccgacggac 174
             |||||||||||||||||| |||||
Sbjct: 23275 gagctgcctgatacgccgtcggac 23252


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,979,319
Number of Sequences: 3902068
Number of extensions: 3979319
Number of successful extensions: 79906
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 78911
Number of HSP's gapped (non-prelim): 992
length of query: 621
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 598
effective length of database: 17,143,297,704
effective search space: 10251692026992
effective search space used: 10251692026992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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