ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1h15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470452.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
2gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
4gb|AY344485.1| Oryza sativa (japonica cultivar-group) heat shock... 72 2e-09
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6dbj|AK106118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
7dbj|AK100430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
8gb|AY107458.1| Zea mays PCO102265 mRNA sequence 54 5e-04
9gb|DQ367297.1| HIV-1 isolate KNH1243 from Kenya nef protein (nef... 42 2.1
10gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, c... 40 8.2
11ref|XM_388928.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.2
12gb|AC132467.3| Mus musculus BAC clone RP23-71E21 from chromosome... 40 8.2
13gb|AC145724.1| Pan troglodytes BAC clone RP43-22E12 from 7, comp... 40 8.2
14emb|AL713969.11| Human DNA sequence from clone RP11-501I17 on ch... 40 8.2
15emb|AL035687.13|HS142O9 Human DNA sequence from clone RP1-142O9 ... 40 8.2
16emb|BX883051.1| Rattus norvegicus chromosome 20, major histocomp... 40 8.2
17emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chr... 40 8.2
18gb|AC104793.4| Homo sapiens BAC clone RP11-234O6 from 4, complet... 40 8.2
19gb|AC091736.2| Homo sapiens chromosome 7 clone RP11-644N4, compl... 40 8.2
20ref|NG_004454.1| Rattus norvegicus Rt1 class 1, M7 pseudogene (R... 40 8.2
21emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chr... 40 8.2
22gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, compl... 40 8.2
23gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone... 40 8.2
24emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chr... 40 8.2 
>ref|XM_470452.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1920

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 406  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 465
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1314 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1373

                                                    
Query: 466  cagccctctatctgttgacaacgacgaggtcgattcaggt 505
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1374 tagccctctatctgttgataatgatgaagtcgattcaggt 1413



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/112 (84%), Gaps = 2/112 (1%)
 Strand = Plus / Plus

                                                                        
Query: 13   ttgacagctcttcatcaacccggnaattctgcagtcacccttgcagaggtcccaggcaac 72
            ||||||||||||||||||| ||| |||||||  || |||||||||||||||||||  |||
Sbjct: 926  ttgacagctcttcatcaactcgg-aattctggtgttacccttgcagaggtcccagctaac 984

                                                                
Query: 73   tcgggcatgccatatatgcccacgagctctggtactttcagcaatttgttca 124
            || ||  |||||||| |  | || |||||||| ||||||||| |||||||||
Sbjct: 985  tcaggtttgccatatgtagctacaagctctgg-actttcagctatttgttca 1035



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                        
Query: 186  ttcccaacatgagtgctgtgccttctgtgccaaaggctatgacgccaggtctaagtgata 245
            |||| ||||||||||| ||||||||||| || |||||| || | ||||| | || |||||
Sbjct: 1094 ttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgata 1153

                                        
Query: 246  tcagtattccaggattcccagatctgca 273
            ||| |||||  | |||||||||| ||||
Sbjct: 1154 tcaatattctggaattcccagatttgca 1181
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>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                         
Query: 406   cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 465
             ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 85843 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 85902

                                                     
Query: 466   cagccctctatctgttgacaacgacgaggtcgattcaggt 505
              ||||||||||||||||| || || || ||||||||||||
Sbjct: 85903 tagccctctatctgttgataatgatgaagtcgattcaggt 85942



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/112 (84%), Gaps = 2/112 (1%)
 Strand = Plus / Plus

                                                                         
Query: 13    ttgacagctcttcatcaacccggnaattctgcagtcacccttgcagaggtcccaggcaac 72
             ||||||||||||||||||| ||| |||||||  || |||||||||||||||||||  |||
Sbjct: 85455 ttgacagctcttcatcaactcgg-aattctggtgttacccttgcagaggtcccagctaac 85513

                                                                 
Query: 73    tcgggcatgccatatatgcccacgagctctggtactttcagcaatttgttca 124
             || ||  |||||||| |  | || |||||||| ||||||||| |||||||||
Sbjct: 85514 tcaggtttgccatatgtagctacaagctctgg-actttcagctatttgttca 85564



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                         
Query: 186   ttcccaacatgagtgctgtgccttctgtgccaaaggctatgacgccaggtctaagtgata 245
             |||| ||||||||||| ||||||||||| || |||||| || | ||||| | || |||||
Sbjct: 85623 ttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgata 85682

                                         
Query: 246   tcagtattccaggattcccagatctgca 273
             ||| |||||  | |||||||||| ||||
Sbjct: 85683 tcaatattctggaattcccagatttgca 85710
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                            
Query: 406      cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 465
                ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 35688065 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 35688124

                                                        
Query: 466      cagccctctatctgttgacaacgacgaggtcgattcaggt 505
                 ||||||||||||||||| || || || ||||||||||||
Sbjct: 35688125 tagccctctatctgttgataatgatgaagtcgattcaggt 35688164



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/112 (84%), Gaps = 2/112 (1%)
 Strand = Plus / Plus

                                                                            
Query: 13       ttgacagctcttcatcaacccggnaattctgcagtcacccttgcagaggtcccaggcaac 72
                ||||||||||||||||||| ||| |||||||  || |||||||||||||||||||  |||
Sbjct: 35687677 ttgacagctcttcatcaactcgg-aattctggtgttacccttgcagaggtcccagctaac 35687735

                                                                    
Query: 73       tcgggcatgccatatatgcccacgagctctggtactttcagcaatttgttca 124
                || ||  |||||||| |  | || |||||||| ||||||||| |||||||||
Sbjct: 35687736 tcaggtttgccatatgtagctacaagctctgg-actttcagctatttgttca 35687786



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                            
Query: 186      ttcccaacatgagtgctgtgccttctgtgccaaaggctatgacgccaggtctaagtgata 245
                |||| ||||||||||| ||||||||||| || |||||| || | ||||| | || |||||
Sbjct: 35687845 ttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgata 35687904

                                            
Query: 246      tcagtattccaggattcccagatctgca 273
                ||| |||||  | |||||||||| ||||
Sbjct: 35687905 tcaatattctggaattcccagatttgca 35687932
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>gb|AY344485.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA,
            complete cds
          Length = 1742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 406  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 465
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1413 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1472

                                                    
Query: 466  cagccctctatctgttgacaacgacgaggtcgattcaggt 505
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1473 tagccctctatctgttgataatgatgaagtcgattcaggt 1512



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/112 (84%), Gaps = 2/112 (1%)
 Strand = Plus / Plus

                                                                        
Query: 13   ttgacagctcttcatcaacccggnaattctgcagtcacccttgcagaggtcccaggcaac 72
            ||||||||||||||||||| ||| |||||||  || |||||||||||||||||||  |||
Sbjct: 1025 ttgacagctcttcatcaactcgg-aattctggtgttacccttgcagaggtcccagctaac 1083

                                                                
Query: 73   tcgggcatgccatatatgcccacgagctctggtactttcagcaatttgttca 124
            || ||  |||||||| |  | || |||||||| ||||||||| |||||||||
Sbjct: 1084 tcaggtttgccatatgtagctacaagctctgg-actttcagctatttgttca 1134



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                        
Query: 186  ttcccaacatgagtgctgtgccttctgtgccaaaggctatgacgccaggtctaagtgata 245
            |||| ||||||||||| ||||||||||| || |||||| || | ||||| | || |||||
Sbjct: 1193 ttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgata 1252

                                        
Query: 246  tcagtattccaggattcccagatctgca 273
            ||| |||||  | |||||||||| ||||
Sbjct: 1253 tcaatattctggaattcccagatttgca 1280
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                            
Query: 406      cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 465
                ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 35778138 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 35778197

                                                        
Query: 466      cagccctctatctgttgacaacgacgaggtcgattcaggt 505
                 ||||||||||||||||| || || || ||||||||||||
Sbjct: 35778198 tagccctctatctgttgataatgatgaagtcgattcaggt 35778237



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/112 (84%), Gaps = 2/112 (1%)
 Strand = Plus / Plus

                                                                            
Query: 13       ttgacagctcttcatcaacccggnaattctgcagtcacccttgcagaggtcccaggcaac 72
                ||||||||||||||||||| ||| |||||||  || |||||||||||||||||||  |||
Sbjct: 35777750 ttgacagctcttcatcaactcgg-aattctggtgttacccttgcagaggtcccagctaac 35777808

                                                                    
Query: 73       tcgggcatgccatatatgcccacgagctctggtactttcagcaatttgttca 124
                || ||  |||||||| |  | || |||||||| ||||||||| |||||||||
Sbjct: 35777809 tcaggtttgccatatgtagctacaagctctgg-actttcagctatttgttca 35777859



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                            
Query: 186      ttcccaacatgagtgctgtgccttctgtgccaaaggctatgacgccaggtctaagtgata 245
                |||| ||||||||||| ||||||||||| || |||||| || | ||||| | || |||||
Sbjct: 35777918 ttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgata 35777977

                                            
Query: 246      tcagtattccaggattcccagatctgca 273
                ||| |||||  | |||||||||| ||||
Sbjct: 35777978 tcaatattctggaattcccagatttgca 35778005
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>dbj|AK106118.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E07, full
            insert sequence
          Length = 1635

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 406  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 465
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1348 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1407

                                                    
Query: 466  cagccctctatctgttgacaacgacgaggtcgattcaggt 505
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1408 tagccctctatctgttgataatgatgaagtcgattcaggt 1447



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/112 (84%), Gaps = 2/112 (1%)
 Strand = Plus / Plus

                                                                        
Query: 13   ttgacagctcttcatcaacccggnaattctgcagtcacccttgcagaggtcccaggcaac 72
            ||||||||||||||||||| ||| |||||||  || |||||||||||||||||||  |||
Sbjct: 960  ttgacagctcttcatcaactcgg-aattctggtgttacccttgcagaggtcccagctaac 1018

                                                                
Query: 73   tcgggcatgccatatatgcccacgagctctggtactttcagcaatttgttca 124
            || ||  |||||||| |  | || |||||||| ||||||||| |||||||||
Sbjct: 1019 tcaggtttgccatatgtagctacaagctctgg-actttcagctatttgttca 1069



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                        
Query: 186  ttcccaacatgagtgctgtgccttctgtgccaaaggctatgacgccaggtctaagtgata 245
            |||| ||||||||||| ||||||||||| || |||||| || | ||||| | || |||||
Sbjct: 1128 ttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgata 1187

                                        
Query: 246  tcagtattccaggattcccagatctgca 273
            ||| |||||  | |||||||||| ||||
Sbjct: 1188 tcaatattctggaattcccagatttgca 1215
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>dbj|AK100430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088F14, full
            insert sequence
          Length = 2051

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 406  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 465
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1439 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1498

                                                    
Query: 466  cagccctctatctgttgacaacgacgaggtcgattcaggt 505
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1499 tagccctctatctgttgataatgatgaagtcgattcaggt 1538



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/112 (84%), Gaps = 2/112 (1%)
 Strand = Plus / Plus

                                                                        
Query: 13   ttgacagctcttcatcaacccggnaattctgcagtcacccttgcagaggtcccaggcaac 72
            ||||||||||||||||||| ||| |||||||  || |||||||||||||||||||  |||
Sbjct: 1051 ttgacagctcttcatcaactcgg-aattctggtgttacccttgcagaggtcccagctaac 1109

                                                                
Query: 73   tcgggcatgccatatatgcccacgagctctggtactttcagcaatttgttca 124
            || ||  |||||||| |  | || |||||||| ||||||||| |||||||||
Sbjct: 1110 tcaggtttgccatatgtagctacaagctctgg-actttcagctatttgttca 1160



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                        
Query: 186  ttcccaacatgagtgctgtgccttctgtgccaaaggctatgacgccaggtctaagtgata 245
            |||| ||||||||||| ||||||||||| || |||||| || | ||||| | || |||||
Sbjct: 1219 ttccaaacatgagtgcggtgccttctgttccgaaggctgtggctccaggcccaactgata 1278

                                        
Query: 246  tcagtattccaggattcccagatctgca 273
            ||| |||||  | |||||||||| ||||
Sbjct: 1279 tcaatattctggaattcccagatttgca 1306
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>gb|AY107458.1| Zea mays PCO102265 mRNA sequence
          Length = 504

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 413 actcagaagcttccgggcatcattgattccttctgggagcagttcct 459
           |||||||  ||||| |||||||| || ||||||||||||||||||||
Sbjct: 47  actcagagccttccaggcatcatcgactccttctgggagcagttcct 93
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>gb|DQ367297.1| HIV-1 isolate KNH1243 from Kenya nef protein (nef) gene, partial
           cds
          Length = 609

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 520 ggaagcgcaagaggagaatgg 540
           |||||||||||||||||||||
Sbjct: 168 ggaagcgcaagaggagaatgg 188
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>gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, complete sequence
          Length = 197574

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 319    tgcaatgcctggtcctgagt 338
              ||||||||||||||||||||
Sbjct: 117526 tgcaatgcctggtcctgagt 117507
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>ref|XM_388928.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08752.1)
            partial mRNA
          Length = 3252

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 86   atatgcccacgagctctggtactt 109
            |||||||||||||||||| |||||
Sbjct: 3027 atatgcccacgagctctgctactt 3050
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>gb|AC132467.3| Mus musculus BAC clone RP23-71E21 from chromosome 14, complete sequence
          Length = 191280

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tcacccttgcagaggtccca 66
             ||||||||||||||||||||
Sbjct: 86625 tcacccttgcagaggtccca 86606
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>gb|AC145724.1| Pan troglodytes BAC clone RP43-22E12 from 7, complete sequence
          Length = 152426

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   tgaaggcagtgatgactctg 374
             ||||||||||||||||||||
Sbjct: 49176 tgaaggcagtgatgactctg 49195
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>emb|AL713969.11| Human DNA sequence from clone RP11-501I17 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 84574

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ctttcagcaatttgttcatc 126
             ||||||||||||||||||||
Sbjct: 57606 ctttcagcaatttgttcatc 57625
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>emb|AL035687.13|HS142O9 Human DNA sequence from clone RP1-142O9 on chromosome 6p11.1-12.3
              Contains a eukaryotic translation elongation factor 1 alpha
              1 (EEF1A1) pseudogene and a zinc finger (ZNF216)
              pseudogene, complete sequence
          Length = 131546

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    gagcagttcctttgtgccag 468
              ||||||||||||||||||||
Sbjct: 130739 gagcagttcctttgtgccag 130758
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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    atccacacaacttcccaaca 194
              ||||||||||||||||||||
Sbjct: 118671 atccacacaacttcccaaca 118690
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>emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chromosome 11, complete
              sequence
          Length = 193528

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    gttcctttgtgccagccctc 473
              ||||||||||||||||||||
Sbjct: 152178 gttcctttgtgccagccctc 152159
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>gb|AC104793.4| Homo sapiens BAC clone RP11-234O6 from 4, complete sequence
          Length = 133244

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 439   ttccttctgggagcagttcctttgtgcc 466
             |||||||||| | |||||||||||||||
Sbjct: 76740 ttccttctggtaacagttcctttgtgcc 76713
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>gb|AC091736.2| Homo sapiens chromosome 7 clone RP11-644N4, complete sequence
          Length = 156539

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    tgaaggcagtgatgactctg 374
              ||||||||||||||||||||
Sbjct: 132102 tgaaggcagtgatgactctg 132083
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>ref|NG_004454.1| Rattus norvegicus Rt1 class 1, M7 pseudogene (RT1-M7) on chromosome
            20
          Length = 2385

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  atccacacaacttcccaaca 194
            ||||||||||||||||||||
Sbjct: 1464 atccacacaacttcccaaca 1483
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>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
             sequence
          Length = 189900

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    acccttgcagaggtcccagg 68
             ||||||||||||||||||||
Sbjct: 10163 acccttgcagaggtcccagg 10182
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>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 231    caggtctaagtgatatcagtattc 254
              |||||||| |||||||||||||||
Sbjct: 180164 caggtctatgtgatatcagtattc 180187
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>gb|AC090121.37| Mus musculus strain C57BL/6J chromosome 16 clone rp23-141k23, complete
              sequence
          Length = 188804

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 231    caggtctaagtgatatcagtattc 254
              |||||||| |||||||||||||||
Sbjct: 173133 caggtctatgtgatatcagtattc 173110
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>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete
            sequence
          Length = 227165

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  tggtactttcagcaatttgt 121
            ||||||||||||||||||||
Sbjct: 2186 tggtactttcagcaatttgt 2205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,433,088
Number of Sequences: 3902068
Number of extensions: 4433088
Number of successful extensions: 75378
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75284
Number of HSP's gapped (non-prelim): 80
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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