ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags1h10 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 217 bits (552), Expect = 2e-56 Identities = 116/154 (75%), Positives = 120/154 (77%) Frame = +1 Query: 43 GSTXNPXQFXXRYDDTNLPYGCDSWFCQHXGQGNYSIPXSGTS*RPSL*PAGIIPAIATS 222 G NP QF + DDTN + F + NYSIP + IIPAIATS Sbjct: 843 GFHMNPIQFE-KDDDTNFHMDVIAGFANMRAR-NYSIPEVDKL-KAKFIAGRIIPAIATS 899 Query: 223 TAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDR 402 TAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDR Sbjct: 900 TAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDR 959 Query: 403 WTVTGNITLRELLEWLKEKGLNAYSIXCGTSLLY 504 WTVTGNITLRELLEWLKEKGLNAYSI CGTSLLY Sbjct: 960 WTVTGNITLRELLEWLKEKGLNAYSISCGTSLLY 993 Score = 33.5 bits (75), Expect = 0.33 Identities = 28/65 (43%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +3 Query: 21 ISKTLPSGFHMXPXXV--XXKV**HQLAIWL**LVLPTXRARXLQHSGKWDKLKAKFIAG 194 +SKTLPSGFHM P H I RAR + DKLKAKFIAG Sbjct: 836 VSKTLPSGFHMNPIQFEKDDDTNFHMDVI----AGFANMRARNYS-IPEVDKLKAKFIAG 890 Query: 195 RXHPS 209 R P+ Sbjct: 891 RIIPA 895
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 217 bits (552), Expect = 2e-56 Identities = 116/154 (75%), Positives = 120/154 (77%) Frame = +1 Query: 43 GSTXNPXQFXXRYDDTNLPYGCDSWFCQHXGQGNYSIPXSGTS*RPSL*PAGIIPAIATS 222 G NP QF + DDTN + F + NYSIP + IIPAIATS Sbjct: 843 GFHMNPIQFE-KDDDTNFHMDVIAGFANMRAR-NYSIPEVDKL-KAKFIAGRIIPAIATS 899 Query: 223 TAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDR 402 TAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDR Sbjct: 900 TAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDR 959 Query: 403 WTVTGNITLRELLEWLKEKGLNAYSIXCGTSLLY 504 WTVTGNITLRELLEWLKEKGLNAYSI CGTSLLY Sbjct: 960 WTVTGNITLRELLEWLKEKGLNAYSISCGTSLLY 993 Score = 33.5 bits (75), Expect = 0.33 Identities = 28/65 (43%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +3 Query: 21 ISKTLPSGFHMXPXXV--XXKV**HQLAIWL**LVLPTXRARXLQHSGKWDKLKAKFIAG 194 +SKTLPSGFHM P H I RAR + DKLKAKFIAG Sbjct: 836 VSKTLPSGFHMNPIQFEKDDDTNFHMDVI----AGFANMRARNYS-IPEVDKLKAKFIAG 890 Query: 195 RXHPS 209 R P+ Sbjct: 891 RIIPA 895
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 182 bits (462), Expect = 4e-46 Identities = 96/154 (62%), Positives = 108/154 (70%) Frame = +1 Query: 43 GSTXNPXQFXXRYDDTNLPYGCDSWFCQHXGQGNYSIPXSGTS*RPSL*PAGIIPAIATS 222 G P QF + DDTN S + NYSIP + IIPAIATS Sbjct: 845 GFQMKPIQFE-KDDDTNFHMDLISGLANMRAR-NYSIPEVDKL-KAKFIAGRIIPAIATS 901 Query: 223 TAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDR 402 TAMATGLVCLELYK +AG H VEDYRNTFANLA+PLFS+AEPVPPK +KH+E SWTVWDR Sbjct: 902 TAMATGLVCLELYKVIAGEHPVEDYRNTFANLALPLFSMAEPVPPKVMKHKETSWTVWDR 961 Query: 403 WTVTGNITLRELLEWLKEKGLNAYSIXCGTSLLY 504 W+V GN+TL ELL+W +KGL AYSI CGTSLLY Sbjct: 962 WSVQGNLTLAELLQWFADKGLTAYSISCGTSLLY 995
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 96.3 bits (238), Expect = 4e-20 Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 2/104 (1%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQE 378 IIPAIAT+TA+ TGLVCLELYK + G +E Y+N F NLA+P +EP+ K+ Sbjct: 43 IIPAIATTTALVTGLVCLELYKVVDGKDDIEQYKNGFINLALPFIGFSEPIKSPEGKYNN 102 Query: 379 LSW-TVWDRWTVTGNITLRELLE-WLKEKGLNAYSIXCGTSLLY 504 + +WDR+ + G+ITL+ELL+ + KE+GL + G SLLY Sbjct: 103 KKFDQIWDRFELNGDITLQELLDHFEKEEGLTISMLSYGVSLLY 146
>UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)| Length = 442 Score = 95.5 bits (236), Expect = 7e-20 Identities = 48/109 (44%), Positives = 70/109 (64%), Gaps = 7/109 (6%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQE 378 IIPAIAT+T+ GLVCLELYK + G ++E Y+N+F NLA+PLFS + P+ P+ + + Sbjct: 274 IIPAIATTTSAIVGLVCLELYKVVQGHQQLESYKNSFINLALPLFSFSAPLAPECHQFYD 333 Query: 379 LSWTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSIXCGTSLLY 504 WT+WDR+ V G +TL++ L++ K E L + G S+LY Sbjct: 334 QEWTLWDRFDVQGLQPSGEEMTLKQFLDYFKTEHKLEVIMLSQGVSMLY 382
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 92.8 bits (229), Expect = 5e-19 Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 7/128 (5%) Frame = +1 Query: 142 NYSIPXSGTS*RPSL*PAGIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLA 321 NY IP + + L IIPAIAT+TA GLVCLELYK + G +++ Y+N F NLA Sbjct: 872 NYDIPSADRH-KSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLDSYKNGFLNLA 930 Query: 322 IPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSI 480 +P F +EP+ ++ WT+WDR+ V G +TL++ L++ K E L + Sbjct: 931 LPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITML 990 Query: 481 XCGTSLLY 504 G S+LY Sbjct: 991 SQGVSMLY 998
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 91.3 bits (225), Expect = 1e-18 Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 7/128 (5%) Frame = +1 Query: 142 NYSIPXSGTS*RPSL*PAGIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLA 321 NY IP + + L IIPAIAT+TA GLVCLELYK + G ++ Y+N F NLA Sbjct: 872 NYDIPPADRH-KSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRHLDSYKNGFLNLA 930 Query: 322 IPLFSIAEPVPPKTIKHQELSWTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSI 480 +P F +EP+ ++ WT+WDR+ V G +TL++ L++ K E L + Sbjct: 931 LPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITML 990 Query: 481 XCGTSLLY 504 G S+LY Sbjct: 991 SQGVSMLY 998
>UBE1X_MOUSE (P31253) Ubiquitin-activating enzyme E1 X (Fragment)| Length = 450 Score = 89.7 bits (221), Expect = 4e-18 Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQE 378 IIPAIAT+TA GLVCLELYK + G +++ Y+N F NLA+P F +EP+ ++ Sbjct: 276 IIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYN 335 Query: 379 LSWTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSIXCGTSLLY 504 WT+WDR+ V G +TL++ L++ K E L + G S+LY Sbjct: 336 QEWTLWDRFEVQGVQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLY 384
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 89.7 bits (221), Expect = 4e-18 Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 7/109 (6%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQE 378 IIPAIAT+TA GLVCLELYK + G +++ Y+N F NLA+P F +EP+ ++ Sbjct: 890 IIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYN 949 Query: 379 LSWTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSIXCGTSLLY 504 WT+WDR+ V G +TL++ L++ K E L + G S+LY Sbjct: 950 QEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLY 998
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 85.9 bits (211), Expect(2) = 2e-17 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPV-PPKTIKHQ 375 IIPAIAT+T++ TGLV LELYK + +E Y+N F NLA+P F +EP+ PK + Sbjct: 862 IIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNN 921 Query: 376 ELSWTVWDRWTVTGNITLRELLE-WLKEKGLNAYSIXCGTSLLY 504 + +WDR+ + G+I L +L+E + K++GL + G SLLY Sbjct: 922 KKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLY 965 Score = 21.9 bits (45), Expect(2) = 2e-17 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 165 DKLKAKFIAGRXHPS 209 D+ K KFIAGR P+ Sbjct: 851 DRQKTKFIAGRIIPA 865
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 85.9 bits (211), Expect(2) = 3e-17 Identities = 46/105 (43%), Positives = 71/105 (67%), Gaps = 3/105 (2%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPV--PPKTIKH 372 I+PA+ TSTA+ +GLVCLEL K + G K+E+Y+N F NLAI LF+ ++P+ P + Sbjct: 851 IVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNG 910 Query: 373 QELSWTVWDRWTVTGNITLRELLEWL-KEKGLNAYSIXCGTSLLY 504 +E+ +WDR+ + + TL+EL+++ KE+GL + G SLLY Sbjct: 911 KEID-KIWDRYNLP-DCTLQELIDYFQKEEGLEVTMLSSGVSLLY 953 Score = 21.2 bits (43), Expect(2) = 3e-17 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +3 Query: 165 DKLKAKFIAGRXHPS 209 D+ K KF+AG+ P+ Sbjct: 840 DRFKTKFVAGKIVPA 854
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 4/106 (3%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQE 378 IIPAIAT+TA GL+ LELYK ++G +R+++ +LA P P Sbjct: 848 IIPAIATTTAAVAGLLGLELYKVVSGPRPRSAFRHSYLHLAENYLIRYMPFAPAIQTFHH 907 Query: 379 LSWTVWDRWTVTG---NITLRELLEWLKEK-GLNAYSIXCGTSLLY 504 L WT WDR V TL LL L+E+ GL + G++LLY Sbjct: 908 LKWTSWDRLKVPAGQPERTLESLLAHLQEQHGLRVRILLHGSALLY 953
>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating| enzyme subunit 2) (Anthracycline-associated resistance ARX) Length = 640 Score = 34.7 bits (78), Expect = 0.15 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFAN 315 IIPAIAT+ A+ GL+ LE K L+G K++ R F N Sbjct: 383 IIPAIATTNAVIAGLIVLEGLKILSG--KIDQCRTIFLN 419
>ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating| enzyme subunit 2) (Anthracycline-associated resistance ARX) Length = 638 Score = 34.7 bits (78), Expect = 0.15 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = +1 Query: 199 IIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFAN 315 IIPAIAT+ A+ GL+ LE K L+G K++ R F N Sbjct: 381 IIPAIATTNAVIAGLIVLEGLKILSG--KIDQCRTIFLN 417
>AMOH_ARTGO (Q59118) Histamine oxidase (EC 1.4.3.6) (Copper amine oxidase)| Length = 683 Score = 32.3 bits (72), Expect = 0.74 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 336 HC*TGSTQDHQAPGAVVDGLGPVDCNGQHH 425 HC TGS ++H APG G D GQ H Sbjct: 651 HCGTGSEREHAAPGGTAVGHSGPDTGGQGH 680
>BCHN_RHOS4 (Q9RFD4) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 428 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +3 Query: 390 GLGPVDCNGQHHAEGAPGV 446 G+GPV C HHA APGV Sbjct: 198 GIGPVRCLPAHHAAEAPGV 216
>HDAC7_MOUSE (Q8C2B3) Histone deacetylase 7a (HD7a)| Length = 938 Score = 28.9 bits (63), Expect = 8.2 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +3 Query: 297 PQHVCKPRDPTVLHC*TGSTQDHQAPGAVVDGLGPVDCNGQHHAEGAPGVAQGEGSERLQ 476 PQ KP + L S +D + G G+GP+ +G H E G +G GS LQ Sbjct: 381 PQRPAKPSEKPRLRQ-IPSAEDLETDGG---GVGPMANDGLEHRESGRGPPEGRGSISLQ 436 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,942,483 Number of Sequences: 219361 Number of extensions: 1420446 Number of successful extensions: 4333 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4324 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
