>YQ53_CAEEL (Q09249) Hypothetical protein C16C10.3|
          Length = 1032

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -1

Query: 476  YFISIAHHMTYNTSSTTPLHIKVQGLTSAHQNNFTMHKRILLQVQVHRKRIQQVHNRTSR 297
            YF +  H ++Y   S   +    + L    +NN+ +H+R  + +Q    RI + H+    
Sbjct: 943  YFRAFGHQVSYQPPSVPDVLYAAENLAKRGRNNYKIHQR-YVNLQAVENRIIKDHSELIN 1001

Query: 296  E 294
            E
Sbjct: 1002 E 1002

>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -3

Query: 426 SSTHQGSRPNKCTSK*FYNAQKNTSASASA*KEDPTSAQSHIKRVLQRLDEKHKFL 259
           S+ H  S P  CT +    A+      A    E P S + HIKR+LQR      FL
Sbjct: 497 STVHPASPPLLCTQEDAEVAESPLRILA----ETPDSFEKHIKRILQRSAANPAFL 548


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,648,346
Number of Sequences: 219361
Number of extensions: 1305893
Number of successful extensions: 3715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3711
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)