>TOC34_ARATH (Q38906) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa|
           chloroplast outer envelope protein) (GTP-binding protein
           OEP34) (AtToc34)
          Length = 313

 Score =  104 bits (260), Expect = 5e-23
 Identities = 48/99 (48%), Positives = 66/99 (66%)
 Frame = +3

Query: 6   VRYIRSGAGIGKREYAXFPLPIAXAENSGRCKTNENGAKILPDGTPWIPNXMKEITIVVS 185
           ++ I++GA + K++   F +P+   ENSGRC  NE+  KILP GT WIPN   +IT +  
Sbjct: 185 LKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEISF 244

Query: 186 NGSRSIHVDXKLIDGPNPNNRWKKYIPLILAXQXFFXXK 302
           NG+++IHVD KL++GPNPN R KK IPL+ A Q     K
Sbjct: 245 NGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

>TOC34_PEA (Q41009) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa|
           chloroplast outer envelope protein) (GTP-binding protein
           OEP34) (GTP-binding protein IAP34)
          Length = 310

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 48/101 (47%), Positives = 64/101 (63%)
 Frame = +3

Query: 6   VRYIRSGAGIGKREYAXFPLPIAXAENSGRCKTNENGAKILPDGTPWIPNXMKEITIVVS 185
           ++ +RSGA + K++     +P+   ENSGRC  N++  K+LP+G  WIP+ ++ IT V  
Sbjct: 186 LQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVAL 244

Query: 186 NGSRSIHVDXKLIDGPNPNNRWKKYIPLILAXQXFFXXKGI 308
           N S SI VD  LIDGPNPN R K +IPLI A Q  F  K I
Sbjct: 245 NKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPI 285

>VCAP_HHV6U (P17887) Major capsid protein (MCP)|
          Length = 1345

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 176  DSDFFHXVWNPWSSIRKNLRPILISLAPSTVLC 78
            DSD F    NPW+S+  +L  IL + A    LC
Sbjct: 1198 DSDTFAATTNPWASLPGSLGDILYNTAHREQLC 1230

>MRAY_HAHCH (Q2S9Y9) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 360

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 268 RGMYFFQRLFGFGPSINX*ST*MDLLPFETTIVISF 161
           R  YF+Q +FGFG ++    T    LP ETT+++ F
Sbjct: 131 RWKYFWQSVFGFGAAVLLFKT--AHLPQETTLIVPF 164

>SRY_ZALCA (Q6TC45) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 110 LISLAPSTVLCXSYWQGKXRIFSFADSCTRTDISH 6
           L+  A S++LC      K   F++ DSC+R   SH
Sbjct: 137 LLPAASSSLLCRQVLVDKSYPFTYRDSCSRATHSH 171

>HXA9_HETFR (Q9IA26) Homeobox protein Hox-A9|
          Length = 260

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
 Frame = +3

Query: 42  REYAXFPLPIAXAENSGRCKTNENGAKILPD---GTPWIPNXMKEITIVVSNGSRSIHVD 212
           R Y   P P+A   +   C T E     L +   GT      + E++   +NG    + D
Sbjct: 117 RHYGIKPEPVASRRSD--CTTFETHTLALSEYTCGTSPADKRVSEVSFSENNGETESNAD 174

Query: 213 XKLIDGPNPNNRW 251
              +D  NP+  W
Sbjct: 175 KLHMDPNNPSANW 187

>SRY_EUMJU (Q6TC46) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 110 LISLAPSTVLCXSYWQGKXRIFSFADSCTRTDISH 6
           L+  A S++LC      K   F++ DSC+R   SH
Sbjct: 137 LLPAASSSLLCRQVLVDKWYPFTYRDSCSRATHSH 171

>SRY_CALUR (Q6TC43) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 98  APSTVLCXSYWQGKXRIFSFADSCTRTDISH 6
           A ST+LC      K   F++ DSC+R   SH
Sbjct: 141 ASSTLLCRQVLVDKWYPFTYRDSCSRATHSH 171

>SRY_ARCGZ (Q6TC44) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 110 LISLAPSTVLCXSYWQGKXRIFSFADSCTRTDISH 6
           L+  A S++LC      K   F++ DSC+R   SH
Sbjct: 137 LLPAASSSLLCRQVLVDKWYPFTYRDSCSRATHSH 171

>SRY_ARCFO (Q6T724) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 110 LISLAPSTVLCXSYWQGKXRIFSFADSCTRTDISH 6
           L+  A S++LC      K   F++ DSC+R   SH
Sbjct: 137 LLPAASSSLLCRQVLVDKWYPFTYRDSCSRATHSH 171

>SRY_ARCAU (Q6T723) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 220

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 110 LISLAPSTVLCXSYWQGKXRIFSFADSCTRTDISH 6
           L+  A S++LC      K   F++ DSC+R   SH
Sbjct: 137 LLPAASSSLLCRQVLVDKWYPFTYRDSCSRATHSH 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,256,523
Number of Sequences: 219361
Number of extensions: 696738
Number of successful extensions: 1626
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)