ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VC09_VACCV (P17372) Ankyrin repeat protein C9 30 5.7
2VC09_VACCC (P21042) Ankyrin repeat protein C9 30 5.7
3SEC17_NEUCR (Q9P6A5) Probable vesicular-fusion protein sec17 hom... 29 9.8
4PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79) (Preg... 29 9.8

>VC09_VACCV (P17372) Ankyrin repeat protein C9|
          Length = 634

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +1

Query: 499 HRDPKIVEFIVNNSS--IDHQENDLLPGLCKLLETWLVSEV 615
           +RDPK+VE+I+ N +  +D+  +D L  +  L  T+ + E+
Sbjct: 350 NRDPKVVEYILKNGNLVVDNDNDDNLINIMPLFPTFSMREL 390



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>VC09_VACCC (P21042) Ankyrin repeat protein C9|
          Length = 634

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +1

Query: 499 HRDPKIVEFIVNNSS--IDHQENDLLPGLCKLLETWLVSEV 615
           +RDPK+VE+I+ N +  +D+  +D L  +  L  T+ + E+
Sbjct: 350 NRDPKVVEYILKNGNLVVDNDNDDNLINIMPLFPTFSMREL 390



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>SEC17_NEUCR (Q9P6A5) Probable vesicular-fusion protein sec17 homolog|
          Length = 292

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
 Frame = +1

Query: 256 EWFEIY-SVALANVAQAIVSKRPELIMVADDLFEQLQKFNIGSQYAYGNEM------DLA 414
           EW+E   +VALAN    +  K  +L  +A D F  ++KF   ++ + GN +      +  
Sbjct: 146 EWYENDGAVALAN---KLWLKVADLSALAGDFFAAIEKFEKVAEASLGNNLMRYSVKEYF 202

Query: 415 LERALCSLLVGDI 453
           L+  LCSL   D+
Sbjct: 203 LKAGLCSLATKDM 215



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>PAPPA_MOUSE (Q8R4K8) Pappalysin-1 precursor (EC 3.4.24.79)|
           (Pregnancy-associated plasma protein-A) (PAPP-A)
           (Insulin-like growth factor-dependent IGF-binding
           protein 4 protease) (IGF-dependent IGFBP-4 protease)
           (IGFBP-4ase)
          Length = 1624

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 388 AYGNEMDLALERALCSLLVGDISNCRTWLAIDNESSPHRDPKIVEFIVNNSSIDHQEN 561
           A+G  +D  LE  LC   + D +     ++  N+    R PK+V + V N   DH EN
Sbjct: 310 AHGFLLDTNLEPPLCGQTLCDNTEV---ISSYNQLPSFRQPKVVRYRVVNIYDDHHEN 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,093,191
Number of Sequences: 219361
Number of extensions: 1513318
Number of successful extensions: 4591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4590
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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