ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.044
2dbj|AP003528.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.044
3dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 44 0.68
4emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 i... 42 2.7
5emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in... 42 2.7
6gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 42 2.7

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.044
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 510      aacaagtgatattatggcaaggataaag 537
                |||||||||||||||| |||||||||||
Sbjct: 15564044 aacaagtgatattatgacaaggataaag 15564017



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>dbj|AP003528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633D04
          Length = 159636

 Score = 48.1 bits (24), Expect = 0.044
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 510   aacaagtgatattatggcaaggataaag 537
             |||||||||||||||| |||||||||||
Sbjct: 53377 aacaagtgatattatgacaaggataaag 53350



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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 44.1 bits (22), Expect = 0.68
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 578    aggtcgagaaaatcattgatga 599
              ||||||||||||||||||||||
Sbjct: 794826 aggtcgagaaaatcattgatga 794847



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>emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 in linkage group 24,
              complete sequence
          Length = 155029

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 449    atactgctgataaagaaactg 469
              |||||||||||||||||||||
Sbjct: 123551 atactgctgataaagaaactg 123531



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>emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in linkage group 18,
              complete sequence
          Length = 153244

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 449    atactgctgataaagaaactg 469
              |||||||||||||||||||||
Sbjct: 123745 atactgctgataaagaaactg 123725



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 509     caacaagtgatattatggcaa 529
               |||||||||||||||||||||
Sbjct: 3895912 caacaagtgatattatggcaa 3895892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,826,061
Number of Sequences: 3902068
Number of extensions: 6826061
Number of successful extensions: 130470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130377
Number of HSP's gapped (non-prelim): 93
length of query: 776
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 753
effective length of database: 17,143,297,704
effective search space: 12908903171112
effective search space used: 12908903171112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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