ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags1c18 |
|---|---|
| Clone Library Name | barley_pub |
>TRA1_CAEBR (Q17308) Sex-determining transformer protein 1| Length = 1165 Score = 32.0 bits (71), Expect = 1.1 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 13/98 (13%) Frame = +3 Query: 153 YVAAAHALKPNYSVYRSALRLV---RSMLPLPYLKVGYLTAPPADDPI----------AP 293 Y A + PNYS R + S + PYL ++ P A + A Sbjct: 385 YEKAKKSRPPNYSNRRRPDHRMPPPTSAMSHPYLAPPHVLPPVAAPGVHQQNFINLALAQ 444 Query: 294 HKHWERSQFILNHAELQQVNASESAPVKPNALVEKAKR 407 H H +R+QFI N+A L N S +A A +A++ Sbjct: 445 HHHNQRAQFIANNAALMDPNGSGAAQAAAAAQAAQAQQ 482
>SDK_DROME (O97394) Protein sidekick precursor| Length = 2224 Score = 31.6 bits (70), Expect = 1.4 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -3 Query: 369 ERFRKH*PAGVPHGLR*TVTSPNVYVVQWGRLPEEQSNIPLSN---MAKAALSGLTVEHC 199 ER R+ P+ P ++ TS VVQWG +P + N + AA G V H Sbjct: 1265 ERTREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHK 1324 Query: 198 DKPNN 184 PNN Sbjct: 1325 TIPNN 1329
>CWC26_CANAL (Q5AL13) Pre-mRNA-splicing factor CWC26| Length = 281 Score = 30.4 bits (67), Expect = 3.2 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 345 QVNASESAPVKPNALVEKAKRFIKVDVADIVSVSTCSDLTLPPGA 479 +V+ E APVK + K F ++D DI++ + + T PP + Sbjct: 69 EVDVDEFAPVKLKTTQKSNKGFKRIDNGDIITTNNTTTTTPPPSS 113
>TSH1_HUMAN (Q6ZSZ6) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3) (Antigen NY-CO-33) Length = 1077 Score = 30.4 bits (67), Expect = 3.2 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 19/71 (26%) Frame = +2 Query: 299 TLGEVTVHLKPCG-------------TPAGQCFRKRSCQTKRARGESQKVYQGRRCGHSF 439 TL E+TVH+ G T RKRS + ++QKV + CGHSF Sbjct: 257 TLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSF 316 Query: 440 ------SVHVL 454 SVH++ Sbjct: 317 ESLQDLSVHMI 327
>ATS10_HUMAN (Q9H324) ADAMTS-10 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 10) (ADAM-TS 10) (ADAM-TS10) (Fragment) Length = 1077 Score = 30.4 bits (67), Expect = 3.2 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Frame = +2 Query: 326 KPCGT-----PAGQCFRKRSCQTKRARGESQKVYQGRRCGHSFSVH 448 KPCGT G C R+RSC G Q GH+F ++ Sbjct: 330 KPCGTLGLAPVGGMCERERSCSVNEDIGLPQAFTIAHEIGHTFGMN 375
>BEM2_YEAST (P39960) GTPase-activating protein BEM2/IPL2 (Bud emergence protein| 2) Length = 2167 Score = 30.4 bits (67), Expect = 3.2 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Frame = +3 Query: 81 LAEDTSRSGGPDISPNDLYSQSAIYVAAAHALKPNYSVYRSALR-----LVRSMLPLPYL 245 L D S S S ND+ S + L P+Y +YR+ L+ L +S L + Sbjct: 284 LKNDDSSSTTATNSGNDVASARSSMAIDPQMLVPDYRLYRAQLKGCVLNLYKSGLN-SNI 342 Query: 246 KVGYLTAPPADDPIAPHKHWERSQFILNHAELQQVNASES 365 K T P ++ IA H ++ Q N A+ + ++ +S Sbjct: 343 KFFDPTLPASNSSIANENHQQKKQQTNNQAQAEALHQKQS 382
>TSH1_MOUSE (Q5DTH5) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3 homolog) Length = 1084 Score = 30.4 bits (67), Expect = 3.2 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 19/71 (26%) Frame = +2 Query: 299 TLGEVTVHLKPCG-------------TPAGQCFRKRSCQTKRARGESQKVYQGRRCGHSF 439 TL E+TVH+ G T RKRS + ++QKV + CGHSF Sbjct: 257 TLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSF 316 Query: 440 ------SVHVL 454 SVH++ Sbjct: 317 ESLQDLSVHMI 327
>AMI4_MYCTU (P63496) Putative amidase amiD (EC 3.5.1.4)| Length = 475 Score = 30.0 bits (66), Expect = 4.2 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Frame = -2 Query: 430 SATSTLINLLAFSTSAF-GLTGALSEALTCWS-SAWFKMN---CDLSQC--LC-GAMGSS 275 +A + +I LA + A+ G +L + W +AW ++ C ++ LC G++GS Sbjct: 127 AAGAVIIGKLAMTEGAYLGYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSD 186 Query: 274 AGGAVKYPTFKYGKGSIERTNRRALR 197 GG++++PT G I+ T R R Sbjct: 187 TGGSIRFPTSMCGVTGIKPTWGRVSR 212
>AMI4_MYCBO (P63497) Putative amidase amiD (EC 3.5.1.4)| Length = 475 Score = 30.0 bits (66), Expect = 4.2 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Frame = -2 Query: 430 SATSTLINLLAFSTSAF-GLTGALSEALTCWS-SAWFKMN---CDLSQC--LC-GAMGSS 275 +A + +I LA + A+ G +L + W +AW ++ C ++ LC G++GS Sbjct: 127 AAGAVIIGKLAMTEGAYLGYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSD 186 Query: 274 AGGAVKYPTFKYGKGSIERTNRRALR 197 GG++++PT G I+ T R R Sbjct: 187 TGGSIRFPTSMCGVTGIKPTWGRVSR 212
>XYLT1_CANFA (Q5QQ56) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 950 Score = 29.6 bits (65), Expect = 5.5 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = -1 Query: 494 VYTEASTRRQRQIRARGH*NYVRNVYLDKPFGFLHERVWFDRSAFGSIDLLEFRM 330 V+ AS + QR +A H ++ +++DK +LH +V +G++ + +RM Sbjct: 323 VHGRASRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQFARQYGNVRVTPWRM 377
>DDL_ENTFA (Q47758) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 348 Score = 29.6 bits (65), Expect = 5.5 Identities = 17/67 (25%), Positives = 28/67 (41%) Frame = +3 Query: 87 EDTSRSGGPDISPNDLYSQSAIYVAAAHALKPNYSVYRSALRLVRSMLPLPYLKVGYLTA 266 E+T G ISP+++Y + AI H + + + +PY+ G L + Sbjct: 71 EETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETIN----MPYVGAGVLAS 126 Query: 267 PPADDPI 287 A D I Sbjct: 127 ANAMDKI 133
>MIAA_NITEU (Q820J6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 317 Score = 29.3 bits (64), Expect = 7.2 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%) Frame = +3 Query: 117 ISPNDLYSQSAIYVAAAHALKPNYSVYRSALRLVRSMLPLPYLKVGYLTAPPADDPI--- 287 I P++ YS + A ++ + R L + +ML L+ G PPADD + Sbjct: 72 IDPDENYSAARFREDALSVMREITARGRVPLLVGGTMLYFKVLRQGLAALPPADDSVRRA 131 Query: 288 ----APHKHWERSQFILNHAELQQVNASESAPVKPN 383 A K W HA L Q++ + ++PN Sbjct: 132 LEQQALDKGWPAM-----HAVLSQLDPVTAGRIQPN 162
>RFNG_RAT (Q9R1U9) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 334 Score = 28.9 bits (63), Expect = 9.3 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = +3 Query: 240 YLKVGYLTAPPADDPIAPHKHWERSQFILNHAELQQVNASESAPVKPNALVEKAKRF 410 Y+ G L A P+ H H E Q + + A LQQV S P P+ +V A F Sbjct: 245 YIVEGLLGARLLHSPLF-HSHLENLQKLPSGAVLQQVTLSYGGPENPHNVVNVAGSF 300
>CRF1_YARLI (P45815) Copper resistance protein CRF1| Length = 411 Score = 28.9 bits (63), Expect = 9.3 Identities = 25/83 (30%), Positives = 33/83 (39%) Frame = +2 Query: 263 CSSGRRPHCTT*TLGEVTVHLKPCGTPAGQCFRKRSCQTKRARGESQKVYQGRRCGHSFS 442 C G R T T + + +KP G PA QC R + +A ++ +CG S S Sbjct: 14 CIRGHRVSSCTHTQ-QPLIRIKPKGRPATQCLHCREARKNKA------LHVKCKCGSSSS 66 Query: 443 VHVL*SDAAAWCWPLYKHNSWAC 511 H AA C P Y C Sbjct: 67 KH------AATC-PCYSGGGCIC 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,803,312 Number of Sequences: 219361 Number of extensions: 1658715 Number of successful extensions: 4940 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4791 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4938 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
