ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags1c01 |
|---|---|
| Clone Library Name | barley_pub |
>YCHF_CAEEL (P91917) Putative GTP-binding protein W08E3.3| Length = 395 Score = 157 bits (398), Expect = 8e-39 Identities = 79/144 (54%), Positives = 102/144 (70%), Gaps = 1/144 (0%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAH 182 TH++ VDPVRDLE IS+EL KD++F+ +D +EK R+NDK KI+++ R+ Sbjct: 132 THVEGEVDPVRDLEIISNELFAKDLQFIDGPLDKVEKLFTRANDKTKKIEYDTLVRVKKC 191 Query: 183 LQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQEH 362 L++ K VR W EIEILN LTAKP+VYLVN+SEKDY+RKKNK+LPKI AW+ + Sbjct: 192 LEEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSEKDYIRKKNKWLPKIKAWIDTN 251 Query: 363 -GGETIIPFSCAFEQKLVDMPGDE 431 G +IPFS AFE KL+DMP DE Sbjct: 252 DAGAVLIPFSGAFELKLLDMPEDE 275
>YBN5_YEAST (P38219) Putative GTP-binding protein YBR025C| Length = 394 Score = 132 bits (333), Expect = 3e-31 Identities = 69/148 (46%), Positives = 98/148 (66%), Gaps = 5/148 (3%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSND----KQLKIDHELCQRI 173 H++ VDPVRDLE I+ ELRLKDIEF Q ++ EK KR KQ K + +L +I Sbjct: 134 HVEGDVDPVRDLEIINQELRLKDIEFAQKALEGAEKIAKRGGQSLEVKQKKEEMDLITKI 193 Query: 174 MAHLQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWV 353 + L+ G+ V W + E+EI+N+ LLTAKP +YL+N+SE+DY+RKKNK L +I WV Sbjct: 194 IKLLESGQRVANHSWTSKEVEIINSMFLLTAKPCIYLINLSERDYIRKKNKHLLRIKEWV 253 Query: 354 QEHG-GETIIPFSCAFEQKLVDMPGDEA 434 ++ G+ IIPFS + E++L M ++A Sbjct: 254 DKYSPGDLIIPFSVSLEERLSHMSPEDA 281
>PTD4_HUMAN (Q9NTK5) Putative GTP-binding protein PTD004| Length = 396 Score = 127 bits (320), Expect = 9e-30 Identities = 69/146 (47%), Positives = 98/146 (67%), Gaps = 3/146 (2%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAH 182 TH++ +VDP+RD+E I EL+LKD E + ID LEK R DK+LK ++++ ++ + Sbjct: 133 THVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSW 192 Query: 183 LQDGKD-VRL-GEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQ 356 + D K VR +W EIE+LN LT+KP+VYLVN+SEKDY+RKKNK+L KI WV Sbjct: 193 VIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVD 252 Query: 357 EHG-GETIIPFSCAFEQKLVDMPGDE 431 ++ G +IPFS A E KL ++ +E Sbjct: 253 KYDPGALVIPFSGALELKLQELSAEE 278
>PTD4_MOUSE (Q9CZ30) Putative GTP-binding protein PTD004 homolog| Length = 396 Score = 127 bits (318), Expect = 2e-29 Identities = 68/146 (46%), Positives = 98/146 (67%), Gaps = 3/146 (2%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAH 182 TH++ +VDP+RD+E I EL+LKD E + +D LEK R DK+LK ++++ ++ + Sbjct: 133 THVEGSVDPIRDIEIIHEELQLKDEEMIGPILDKLEKVAVRGGDKKLKPEYDIMCKVKSW 192 Query: 183 LQDGKD-VRL-GEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQ 356 + D K VR +W EIE+LN LT+KP+VYLVN+SEKDY+RKKNK+L KI WV Sbjct: 193 VIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVD 252 Query: 357 EHG-GETIIPFSCAFEQKLVDMPGDE 431 ++ G +IPFS A E KL ++ +E Sbjct: 253 KYDPGALVIPFSGALELKLQELSAEE 278
>YLF2_YEAST (P38746) Putative GTP-binding protein YLF2| Length = 405 Score = 105 bits (263), Expect = 4e-23 Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 8/149 (5%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSM----KRSNDKQ-LKIDHELCQ 167 THI+ VDPVRDL + EL LKD+EF++ + L K M K S + Q +KI+ EL Sbjct: 128 THIEGNVDPVRDLSVVQDELILKDLEFLENIRERLSKKMRMVSKNSKEHQEMKIETELLD 187 Query: 168 RIMAHLQDGKDVR--LGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKI 341 + HL +GK +R W E++ILN LT+KP + L+N+S +DY+R +NKF+ I Sbjct: 188 ALEEHLFNGKKIRHFKDHWNLDEVKILNKHNFLTSKPTLILLNVSPQDYVRNENKFVRNI 247 Query: 342 HAWVQEHG-GETIIPFSCAFEQKLVDMPG 425 W+ E G+ + FS FE +L++ G Sbjct: 248 IEWINEFSPGDKFLLFSAEFESQLMECKG 276
>YEAD_SCHPO (O14078) Hypothetical GTP-binding protein UNK4.13c in chromosome I| Length = 407 Score = 100 bits (250), Expect = 1e-21 Identities = 58/145 (40%), Positives = 84/145 (57%), Gaps = 1/145 (0%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHL 185 H++ +VDPVRDL+ I EL LKD EF+++ + K RS K + + L Sbjct: 158 HVEKSVDPVRDLQIIQEELLLKDAEFLESYL----KKEGRSPKTCAKALDTARRALEVVL 213 Query: 186 QDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQEHG 365 G+ + EW +I ILN+ LLTAKPVVYLVNM + DYL + + L I WV+++ Sbjct: 214 GKGRQISKAEWNDEQIPILNSLNLLTAKPVVYLVNMDQDDYLSDEQEALKGIKEWVEKNS 273 Query: 366 -GETIIPFSCAFEQKLVDMPGDEAA 437 G+ +IP S FE++L + +EAA Sbjct: 274 FGDQVIPLSVLFEEQLFMLTPEEAA 298
>ENGD_HAEDU (Q7VMI2) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 70.5 bits (171), Expect = 2e-12 Identities = 38/142 (26%), Positives = 74/142 (52%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHL 185 H+ +DP D+ETI+ EL L D++ + I L+K K S DK K + + ++I+ L Sbjct: 113 HVAGKIDPADDIETINTELALADLDSCERAIQRLQKRAK-SGDKDAKFELSILEKILPVL 171 Query: 186 QDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQEHG 365 ++ +R E+ + + LT KP +Y+ N++E + + N +L ++ + E Sbjct: 172 ENAGMIRSVALDKDELHAIKGYNFLTLKPTMYIANVNEDSF--ENNPYLDRVRQ-LAEQE 228 Query: 366 GETIIPFSCAFEQKLVDMPGDE 431 G ++P A E ++ ++ +E Sbjct: 229 GAVVVPVCAAIEAEIAELEDEE 250
>ENGD_BACSU (P37518) GTP-dependent nucleic acid-binding protein engD| Length = 366 Score = 70.5 bits (171), Expect = 2e-12 Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 2/145 (1%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAH 182 TH+ VDP+ D+ETI+ EL L D+E V+ +I + K + + DK + E+ ++ Sbjct: 113 THVSGKVDPIDDIETINLELILADMETVEKRITRVSK-LAKQKDKDAVFEFEILSKLKEA 171 Query: 183 LQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKK-NKFLPKIHAWVQE 359 + K R E+ + +++ LLT+KP++Y+ N+SE + N+ + KI + Sbjct: 172 FESEKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAG 231 Query: 360 HGGETIIPFSCA-FEQKLVDMPGDE 431 E I+ CA E ++ ++ G+E Sbjct: 232 ENAEVIV--VCAKIESEIAELEGEE 254
>Y026_MYCPN (P75088) Probable GTP-binding protein MG024 homolog (B01_orf362)| Length = 362 Score = 66.2 bits (160), Expect = 3e-11 Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHL 185 H+++ VDPV D E I +EL DIE V +I +++ + S DKQ K +++L ++ L Sbjct: 113 HVNNQVDPVFDFEIIVNELIQADIEVVNTRIGKIKRKAE-SGDKQSKEEYQLLAPVLQGL 171 Query: 186 QDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLR-KKNKFLPKIHAWVQEH 362 Q + V L +++ L + LLTAKP++ + N+SE D N L +++ ++++H Sbjct: 172 QQNQMV-LHLVNEVDLKKLKSLNLLTAKPILVVANVSEADLSNLDHNPHLTQLNQFLKQH 230 Query: 363 GGETIIPFSCAFEQKL 410 IP E +L Sbjct: 231 NLPHAIPVCALLENEL 246
>ENGD_BUCBP (Q89AR6) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 66.2 bits (160), Expect = 3e-11 Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 1/126 (0%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAH 182 THI +VDPVRD++ I+ EL L DIE + ++ LE + K S++KQ+ + + ++ + H Sbjct: 112 THIYGSVDPVRDVQIINLELILSDIEVCKNRMCKLEIN-KLSHNKQVNKELLILKKCVYH 170 Query: 183 LQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQ-E 359 L+ K +R EI ++N +L+T KPVVY+ N+S + +N + +I ++ E Sbjct: 171 LEKSKSLRSLNLTEEEIFVINYLRLITLKPVVYIFNISID---QSRNLYKREIFDIIKNE 227 Query: 360 HGGETI 377 H +T+ Sbjct: 228 HNAKTV 233
>Y024_MYCGE (P47270) Probable GTP-binding protein MG024| Length = 367 Score = 62.8 bits (151), Expect = 4e-10 Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHL 185 H+++T+DPV D E I +EL D E + +I L++ + S DK K + L + ++ L Sbjct: 113 HVNNTIDPVFDFEIIVNELIQADFELITNRIGKLKRKAE-SGDKIAKEEFVLLEIVLNGL 171 Query: 186 QDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLR-KKNKFLPKIHAWVQE 359 + G+ + + +E++ + + LLTAKP++ + N+SE D L N+ L K++A++ + Sbjct: 172 KQGQ-MPIQTLSESELKTIKSLNLLTAKPILIVANVSENDLLNLDNNEALKKLNAFLDQ 229
>ENGD_SHIFL (P0ABU4) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 59.3 bits (142), Expect = 4e-09 Identities = 34/142 (23%), Positives = 69/142 (48%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHL 185 H+ V+P D+E I+ EL L D++ + I ++K K DK K + + ++ + L Sbjct: 113 HVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAK-GGDKDAKAELAVLEKCLPQL 171 Query: 186 QDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQEHG 365 ++ +R + A E + LT KP +Y+ N++E + + N +L ++ + Sbjct: 172 ENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGF--ENNPYLDQVRE-IAAKE 228 Query: 366 GETIIPFSCAFEQKLVDMPGDE 431 G ++P A E + ++ +E Sbjct: 229 GSVVVPVCAAVEADIAELDDEE 250
>ENGD_ECOLI (P0ABU2) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 59.3 bits (142), Expect = 4e-09 Identities = 34/142 (23%), Positives = 69/142 (48%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHL 185 H+ V+P D+E I+ EL L D++ + I ++K K DK K + + ++ + L Sbjct: 113 HVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAK-GGDKDAKAELAVLEKCLPQL 171 Query: 186 QDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQEHG 365 ++ +R + A E + LT KP +Y+ N++E + + N +L ++ + Sbjct: 172 ENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGF--ENNPYLDQVRE-IAAKE 228 Query: 366 GETIIPFSCAFEQKLVDMPGDE 431 G ++P A E + ++ +E Sbjct: 229 GSVVVPVCAAVEADIAELDDEE 250
>ENGD_ECO57 (P0ABU3) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 59.3 bits (142), Expect = 4e-09 Identities = 34/142 (23%), Positives = 69/142 (48%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHL 185 H+ V+P D+E I+ EL L D++ + I ++K K DK K + + ++ + L Sbjct: 113 HVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAK-GGDKDAKAELAVLEKCLPQL 171 Query: 186 QDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQEHG 365 ++ +R + A E + LT KP +Y+ N++E + + N +L ++ + Sbjct: 172 ENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGF--ENNPYLDQVRE-IAAKE 228 Query: 366 GETIIPFSCAFEQKLVDMPGDE 431 G ++P A E + ++ +E Sbjct: 229 GSVVVPVCAAVEADIAELDDEE 250
>ENGD_BUCAI (P57288) GTP-dependent nucleic acid-binding protein engD| Length = 361 Score = 57.4 bits (137), Expect = 2e-08 Identities = 38/144 (26%), Positives = 77/144 (53%), Gaps = 1/144 (0%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLE-KSMKRSNDKQLKIDHELCQRIMA 179 THI + V P++D++ I+ EL L D + + I L+ K++ ++ + Q KI+ ++ + Sbjct: 112 THIYNQVQPIKDIDIINSELILSDFDLCEKTILKLQKKTLLKNKETQEKIN--TLKKCLN 169 Query: 180 HLQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQE 359 HL+ ++ E ++++ + LT KP +Y+ N++E+ ++ FL K++ + + Sbjct: 170 HLKQFFMLKTLNLNKTEKQLISYLRFLTLKPTMYIANINEE---KESYYFLDKLNE-IAK 225 Query: 360 HGGETIIPFSCAFEQKLVDMPGDE 431 G +IP E LV M +E Sbjct: 226 KEGSIVIPIHANLELDLVKMSDEE 249
>ENGD_BUCAP (Q8K9V2) GTP-dependent nucleic acid-binding protein engD| Length = 361 Score = 52.0 bits (123), Expect = 6e-07 Identities = 37/143 (25%), Positives = 74/143 (51%) Frame = +3 Query: 3 THIDDTVDPVRDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAH 182 +HI + + P D++ I+ EL L D E + I L+K + N K+++ + + + H Sbjct: 112 SHIYNQLQPKIDVDIINSELILADFETCEKSILKLQKKLN-FNKKEIEEKLVVLSKCLDH 170 Query: 183 LQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQEH 362 L+ ++ E E +I++ + LT KP +Y+ N++E+ ++ FL ++ ++ Sbjct: 171 LKKFLMLKTLELDENEKKIISYLRFLTLKPTMYIANINEQ---KESCFFLNELEKMAKKE 227 Query: 363 GGETIIPFSCAFEQKLVDMPGDE 431 G ++IP + E L+ M DE Sbjct: 228 -GSSVIPINSNLELDLIKMNEDE 249
>Y582_VIBCH (Q9KUD9) Hypothetical UPF0011 protein VC0582| Length = 288 Score = 32.0 bits (71), Expect = 0.68 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +3 Query: 147 IDHELCQRIMAHLQDGKDVRLGEWKAAEI-EILNTFQLLTAKPVVYLVNMSEKDYLRKKN 323 I +E RI LQD DV GE + E+ TF+ + P+ L+ +D RKK Sbjct: 167 IFYESPHRICESLQDMLDVLGGEREVVLARELTKTFETIQGMPLAELITWIAEDDNRKKG 226 Query: 324 KFLPKIHAWVQEHGGETIIP 383 + + +H + GE +P Sbjct: 227 EMVLLVHGY--RDAGEQQLP 244
>A60DA_DROME (P91927) Calcium-binding mitochondrial protein Anon-60Da| Length = 1013 Score = 32.0 bits (71), Expect = 0.68 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 10/116 (8%) Frame = +3 Query: 6 HIDDTVDPVRDLETISHELRLKDIEFVQAKID----------DLEKSMKRSNDKQLKIDH 155 HIDD ++ ++ L+ S E RLK IE V K D D+ K ++ +K+ Sbjct: 752 HIDDLMNNIKVLKETSDEARLKHIEAVLEKFDADKDGVVTVNDIRKVLESIGRDNIKLSD 811 Query: 156 ELCQRIMAHLQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKN 323 + + +++ L D + V E K IE + A+ + V+ ++KD + N Sbjct: 812 KAIEELIS-LLDKEQVLQAEQK---IEKAIAKSMKEAEKLKSEVDKADKDLSKLVN 863
>GCYB2_HUMAN (O75343) Guanylate cyclase soluble subunit beta-2 (EC 4.6.1.2)| (GCS-beta-2) Length = 617 Score = 30.8 bits (68), Expect = 1.5 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 12/126 (9%) Frame = +3 Query: 6 HIDDTV--DPVRDLETISHELRLKDIEF---VQAKIDDLEKSMKRSNDKQLKIDHELCQR 170 H+ D D RDL ++ + RL +IE ++ K ++L+ K ++ K + L Sbjct: 309 HLSDIAPNDTTRDLILLNQQ-RLAEIELSNQLERKKEELQVLSKHLAIEKKKTETLLYAM 367 Query: 171 IMAH----LQDGKDVRLGEWKAAEI---EILNTFQLLTAKPVVYLVNMSEKDYLRKKNKF 329 + H L++GK V GE+K+ I +++ + TA + +VN+ Y K Sbjct: 368 LPKHVANQLREGKKVAAGEFKSCTILFSDVVTFTNICTACEPIQIVNVLNSMY--SKFDR 425 Query: 330 LPKIHA 347 L +HA Sbjct: 426 LTSVHA 431
>GHR_CANFA (Q9TU69) Growth hormone receptor precursor (GH receptor)| (Somatotropin receptor) [Contains: Growth hormone-binding protein (GH-binding protein) (GHBP) (Serum-binding protein)] Length = 638 Score = 30.0 bits (66), Expect = 2.6 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 75 IEFVQAKIDDL-EKSMKRSNDKQLKIDHELCQRIMAHLQDGKDVRLGEWKAAEIEILNT 248 +EF++ IDDL EK+ D+ L DHE I+ KD G E +IL T Sbjct: 343 VEFIELDIDDLDEKTEGSDTDRLLSNDHEKSLNILG----AKDDDSGRTSCYEPDILET 397
>SMC4_YEAST (Q12267) Structural maintenance of chromosome 4| Length = 1418 Score = 29.6 bits (65), Expect = 3.4 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +3 Query: 33 RDLETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKID-HELCQRIMAHLQDGKDVRL 209 RD+E S EL++ + + K+ E + LK++ E +++ ++D ++ + Sbjct: 1021 RDVELSSDELKVIEEQLKHTKLALAENDTNMNETLNLKVELKEQSEQLKEQMEDMEE-SI 1079 Query: 210 GEWKAAEIEILNTFQLLTA 266 E+K+ EIE+ N + L + Sbjct: 1080 NEFKSIEIEMKNKLEKLNS 1098 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = +3 Query: 6 HIDDTVDPV-RDLETISH-ELRLKDIEFVQAKIDDLEKSMKRSN 131 +ID+T D V R + +S ELR D+E +++KI++L ++ +N Sbjct: 1176 NIDETSDEVSRGIPRLSEDELRELDVELIESKINELSYYVEETN 1219
>M12_STRPY (P19401) M protein, serotype 12 precursor (Fragment)| Length = 564 Score = 29.6 bits (65), Expect = 3.4 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Frame = +3 Query: 84 VQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHLQDGKDVRLGEWKAAEIEILNTFQLLT 263 ++AKI +LEKS++ ND +I EL + +Q G++V + + EI +++ Sbjct: 124 LKAKITELEKSVEEKNDVLSQIKKEL-EEAEKDIQFGREVHAADLLRHKQEIAEKENVIS 182 Query: 264 -----AKPVVYLVNMSEKDYLRKKNKFL 332 +P+ V+ ++++ ++K K L Sbjct: 183 KLNGELQPLKQKVDETDRNLQQEKQKVL 210
>IPL1_CANGA (Q6FV07) Spindle assembly checkpoint kinase (EC 2.7.11.1) (Aurora| kinase) Length = 358 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = +3 Query: 66 LKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHLQDGKDVRL 209 LK IE + +L K +KR D QL +DH ++ AH D K V L Sbjct: 128 LKAIEKNEILQFNLLKQLKREVDIQLGMDHPNIIKLYAHFHDEKRVYL 175
>FUMC_STAS1 (Q49YP8) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 461 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/103 (18%), Positives = 52/103 (50%), Gaps = 7/103 (6%) Frame = +3 Query: 9 IDDTVDPVRDL-------ETISHELRLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQ 167 ID+++ P D+ +T + + V+ K++ K+++ + ++ + H++ + Sbjct: 122 IDESIHPNDDVNKSQSSNDTFPTAMHVALYNEVETKLEPALKTLRDTFKQKEEQYHDIIK 181 Query: 168 RIMAHLQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLVNMS 296 HLQD +RLG+ + +L+ + L ++ +++N++ Sbjct: 182 IGRTHLQDATPIRLGQEISGWRYMLDKCETLLSESKAHILNLA 224
>DNAA_BDEBA (Q6MRS1) Chromosomal replication initiator protein dnaA| Length = 471 Score = 29.3 bits (64), Expect = 4.4 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 9/70 (12%) Frame = +3 Query: 96 IDDLEKSMKR----SNDKQLKIDHELCQRIMAHLQDGKDVRLGEWKAA-----EIEILNT 248 I +LE ++K+ S + L IDHEL +RI+AH + + + E ++ +L+ Sbjct: 335 IRELEGNLKKVKMFSELQGLPIDHELVKRILAHHETQSTISVEEIMKLVADHFKVRVLDL 394 Query: 249 FQLLTAKPVV 278 AKP+V Sbjct: 395 KSSTRAKPIV 404
>RECF_RICFE (Q4UNG8) DNA replication and repair protein recF| Length = 364 Score = 28.9 bits (63), Expect = 5.8 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +3 Query: 63 RLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIMAHLQDGKD 200 RLK +EF+Q ID+LE +++ L ID + Q+I+ DGK+ Sbjct: 196 RLKTLEFMQQAIDELENEFPKAD---LSIDGIVEQKIL----DGKE 234
>RECF_RICCN (Q92JN5) DNA replication and repair protein recF| Length = 360 Score = 28.9 bits (63), Expect = 5.8 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +3 Query: 63 RLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIM 176 RLK +EF+Q IDDLE +++ L ID + Q+I+ Sbjct: 196 RLKTLEFMQQAIDDLENEFPKAD---LSIDGIVEQKIL 230
>NADA_METTH (O27855) Quinolinate synthetase A| Length = 304 Score = 28.5 bits (62), Expect = 7.6 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 13/97 (13%) Frame = +3 Query: 132 DKQLKIDHELCQRIMAHLQDGKDVRLGEWK---AAEIEILNTFQ--------LLTAKPVV 278 DK++ I + MAH+ +DVR+ + AA + +NT L T+ V Sbjct: 74 DKKILIPDRGAECPMAHMLSAEDVRMARKRYPDAAVVLYVNTLAEAKAEADILCTSANAV 133 Query: 279 YLVNMSEKDYLRKKNKFLPKIH-AW-VQEHGGETIIP 383 +V ++D + F P + AW VQEH +TIIP Sbjct: 134 RVVESLDEDLVL----FGPDRNLAWYVQEHTDKTIIP 166
>YCCH_BACSU (P70955) Hypothetical sensory transduction protein yccH| Length = 233 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Frame = +3 Query: 108 EKSMKRSNDKQLKIDHELCQRIMAHLQDGKDVRLGEWKAAEIEILNTFQLLTAKPVVYLV 287 ++ +K+ + L + Q+ H+ KD+ E I+ T + + + + Sbjct: 114 DRYLKKKTETSLNGRILIKQKSEMHVLQKKDIIFAERTGRSTTIVTTAEEVQTYQTLNDI 173 Query: 288 --NMSEKDYLRKKNKFLPKIHAWVQEHGGETIIPFSCAFE 401 ++ EKD+LR F+ IH +++ T F+ +FE Sbjct: 174 KGDLPEKDFLRSHRSFIINIH-YIKHFSAYTKHSFTVSFE 212
>RECF_RICPR (Q9ZEB6) DNA replication and repair protein recF| Length = 360 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 63 RLKDIEFVQAKIDDLEKSMKRSNDKQLKIDHELCQRIM 176 RLK I F+Q IDD+E +++ L ID + Q+I+ Sbjct: 196 RLKTIRFIQQAIDDIENEFPKAD---LSIDGIIEQKIL 230
>SL9A2_HUMAN (Q9UBY0) Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2)| (NHE-2) (Solute carrier family 9 member 2) Length = 812 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +3 Query: 117 MKRSNDKQLKIDHELCQRIMAHLQDGKDVRLGEW 218 +KRSN KQ + E+ R+ H++ G + G W Sbjct: 488 VKRSNKKQQAVSEEIYCRLFDHVKTGIEDVCGHW 521
>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)| (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte nuclear envelope protein 1) (Myne-1) (Enaptin) Length = 8797 Score = 28.1 bits (61), Expect = 9.9 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Frame = +3 Query: 33 RDLETISHELRLKDIEFVQAKIDD--LEKSMKRSNDKQLKIDHELCQRIMAHLQDGKDVR 206 +DL TI +L+ K VQAK D L + + N K +++D + + + + Q GK + Sbjct: 5439 KDLTTILTKLKAKTDNVVQAKTDQKVLGEELDGCNSKLMELDAAVQKFLEQNGQLGKPLA 5498 Query: 207 LGEWKAAEIEILNTFQLLTAKPVVYLVNMSEKDYLRKKNKFLPKIHAWVQE 359 K ++ L+ + A+ + +N + +L + N+ L I W+++ Sbjct: 5499 K---KIGKLTELHQQTIRQAENRLSKLNQA-ASHLEEYNEMLELILKWIEK 5545 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,033,702 Number of Sequences: 219361 Number of extensions: 1013600 Number of successful extensions: 2851 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2838 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
