ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags1b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ421478.1| Mus musculus X-inactivation center region; segme... 36 3.1
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.1
3dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 36 3.1
4gb|AF045694.1|MMXPCTI2 Mus musculus X-linked PEST-containing tra... 36 3.1
5emb|AL671187.9| Mouse DNA sequence from clone RP23-273N4 on chro... 36 3.1

>emb|AJ421478.1| Mus musculus X-inactivation center region; segment 1/3
          Length = 247850

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 10     ctatggcgggtgtcacaaagga 31
              ||||||| ||||||||||||||
Sbjct: 136367 ctatggctggtgtcacaaagga 136346



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 6        tctgctatggcgggtgtc 23
                ||||||||||||||||||
Sbjct: 24169121 tctgctatggcgggtgtc 24169104



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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A05
          Length = 174290

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 6      tctgctatggcgggtgtc 23
              ||||||||||||||||||
Sbjct: 127862 tctgctatggcgggtgtc 127845



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>gb|AF045694.1|MMXPCTI2 Mus musculus X-linked PEST-containing transporter (Xpct) gene,
            putative intron 5
          Length = 1665

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 10   ctatggcgggtgtcacaaagga 31
            ||||||| ||||||||||||||
Sbjct: 1327 ctatggctggtgtcacaaagga 1306



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>emb|AL671187.9| Mouse DNA sequence from clone RP23-273N4 on chromosome X, complete
             sequence
          Length = 205749

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 10    ctatggcgggtgtcacaaagga 31
             ||||||| ||||||||||||||
Sbjct: 34447 ctatggctggtgtcacaaagga 34468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,042
Number of Sequences: 3902068
Number of extensions: 133042
Number of successful extensions: 30522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30509
Number of HSP's gapped (non-prelim): 13
length of query: 34
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 14
effective length of database: 17,155,003,908
effective search space: 240170054712
effective search space used: 240170054712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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