ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags1a17 |
|---|---|
| Clone Library Name | barley_pub |
>SYNPO_HUMAN (Q8N3V7) Synaptopodin| Length = 929 Score = 33.1 bits (74), Expect = 0.59 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = -1 Query: 252 LHRSSTRAASHLNRAADDIEVHARSIAASPSVLRCSSAVAAPVTTPHHN----DAAESPP 85 LH S R A + A EVH+ + + ++ S+ + P + HN D ++PP Sbjct: 286 LHLSQNREAQQSSPAPPPAEVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPP 345 Query: 84 SLMVP 70 + +VP Sbjct: 346 ATVVP 350
>DED1_YARLI (Q6CB69) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 618 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = -1 Query: 111 HNDAAESPPSLMVPPVPHAATLVTTGRGTDNRCPDN 4 +ND +P S VPP H A TG GT N P N Sbjct: 14 NNDTPAAPRSKYVPP--HRAKAAATGNGTSNSAPSN 47
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 31.6 bits (70), Expect = 1.7 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Frame = -1 Query: 567 EASVVRRCSIAAGEPLH*STGGLAMLHSSKG--DASSKHWWSGDAP*QQGSRFIEAPVVR 394 E+S +RC +GE S GG SS+G S SG + Q GSR Sbjct: 1662 ESSTSQRCGSGSGESSGFSQGGSGQGRSSRGGQQGSFSGQTSGRSQHQSGSR--HGSGSG 1719 Query: 393 RCSIAAREPLHRSTGGLAMLHSSKGDASSKHRWS 292 + I+ ++ H + H+S SS +WS Sbjct: 1720 QFPISGQQGSHHGHSSSSGTHNSGSSQSSSTQWS 1753
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = -1 Query: 225 SHLNRAADDIEVHARSIAASPSVLRCSSAVAAPVTTPHHNDAAESPPSLMVPPV 64 +HL R + AASP L SS +A P+ +D +SP +V PV Sbjct: 132 NHLPRLTSRQDTSGEFSAASPERLSVSSTIAGGKRLPYSSDVNQSPNRRIVDPV 185
>JAM2_HUMAN (P57087) Junctional adhesion molecule B precursor (JAM-B)| (Junctional adhesion molecule 2) (Vascular endothelial junction-associated molecule) (VE-JAM) (CD322 antigen) Length = 298 Score = 31.2 bits (69), Expect = 2.2 Identities = 19/76 (25%), Positives = 29/76 (38%) Frame = -3 Query: 376 TGAASSKHRWSGDAP*QQGRRFIEAPVVRRCSIAACAAPVHAPSQQYTGCIASQPCCR*H 197 T + + K+R AP +QG+ E V +A PS +G + C Sbjct: 100 TRSDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPSCEVPSSALSGTVVELRCQDKE 159 Query: 196 RGPCTQYRSFAIGVAL 149 P +Y F G+ L Sbjct: 160 GNPAPEYTWFKDGIRL 175
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 30.4 bits (67), Expect = 3.8 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -1 Query: 174 AASPSVL-RCSSAVAAPVTTPHHNDAAESPPSL----MVPPVPHAATLVTTGRGTDN 19 A SP+ L SS++ +P T H + ++ PP+ PP A T T GT N Sbjct: 263 APSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTPPSTAAGTTTATNGGTSN 319
>THD1_ARATH (Q9ZSS6) Threonine dehydratase biosynthetic, chloroplast precursor| (EC 4.3.1.19) (Threonine deaminase) (TD) Length = 592 Score = 30.4 bits (67), Expect = 3.8 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -1 Query: 189 HARSIAASPSVLRCSSAVAAPVTTP 115 HA+ +A S S L C++ + PVTTP Sbjct: 169 HAQGVALSASKLGCTAVIVMPVTTP 193
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 29.6 bits (65), Expect = 6.5 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = -1 Query: 210 AADDIEVHARSIAASPSVLRCSSAVA--APVTTPHHNDAAESPPSLMVPPVPHAATL 46 A ++ H IAA+P ++ V A TTP D PPSL PP P L Sbjct: 264 APQPVQSHPPIIAATPQPVKTKKGVKRKADTTTPTTIDPIHEPPSL--PPEPKTTKL 318
>CU64_LOCMI (P11739) Cuticle protein 64 (LM-64) (LM-ACP 64)| Length = 152 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -1 Query: 189 HARSIAASPSVLRCSSAVAAPVTTPHHNDAAESPPSLMVPPVPHAATLVTT 37 H ++AA+P+ + + VAAP A +P + P V HA V+T Sbjct: 21 HGLALAAAPAAIAAPAVVAAPA-------IAHAPAVAVAPAVAHAPAAVST 64
>VE2_HPV27 (P36789) Regulatory protein E2| Length = 388 Score = 29.6 bits (65), Expect = 6.5 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Frame = -1 Query: 255 MLHRSSTRAASHLNRAADDIEVHARSIAASPSVLRCSSAVAAPVTTPHHN--DAAESPPS 82 ++H +S +S A+DD + +A SP S+A A T P N A +PPS Sbjct: 194 VIHHTSASVSSTQATASDDEPLSPIRLAVSPVPAPASAASARTGTAPPTNLLCTAPAPPS 253 Query: 81 LMVPPVPHAATLVTTGRGTDNRCPDNT 1 PP +V G + PD+T Sbjct: 254 ---PPAKRQRVIV----GQQHLRPDST 273
>CU63_LOCMI (P45584) Cuticle protein 63 (LM-63) (LM-ACP 63)| Length = 157 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -1 Query: 189 HARSIAASPSVLRCSSAVAAPVTTPHHNDAAESPPSLMVPPVPHAATLVTT 37 H ++AA+P+ + + VAAP A +P + P V HA V+T Sbjct: 21 HGLALAAAPAAIAAPAVVAAPA-------IAHAPAVAVAPAVAHAPAAVST 64
>CU65_LOCMI (P45585) Cuticle protein 65 (LM-65) (LM-ACP 65)| Length = 145 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -1 Query: 189 HARSIAASPSVLRCSSAVAAPVTTPHHNDAAESPPSLMVPPVPHAATLVTT 37 H ++AA+P+ + + VAAP A +P + P V HA V+T Sbjct: 21 HGLALAAAPAAIAAPAVVAAPA-------IAHAPAVAVAPAVAHAPAAVST 64
>GIDA_BACTN (Q8A2N7) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 628 Score = 29.6 bits (65), Expect = 6.5 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 103 VVVMRGGHRCCDS*AATQHRWRSCDTACMDLDVIGSTVEMRCSPCTAAMEHGQ 261 V+V+ GH C++ AA + MD++ IG +M C+P + GQ Sbjct: 7 VIVIGAGHAGCEAAAAAANLGSKTCLITMDMNKIG---QMSCNPAVGGIAKGQ 56
>YWIS_WHEAT (P14723) Hypothetical 16 kDa protein in middle repetitive insertion| sequence WIS1 Length = 151 Score = 29.3 bits (64), Expect = 8.5 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -1 Query: 180 SIAASPSV--LRCS-SAVAAPVTTPHHNDAAESPPSLMVPPVP 61 S A SP + L C+ SA A PV PHH PP PP P Sbjct: 29 SPAPSPQLRSLSCTTSAAATPVPVPHHCLRCCDPPPPPPPPTP 71
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 29.3 bits (64), Expect = 8.5 Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 9/124 (7%) Frame = -1 Query: 354 TGGLAMLHSSKGDASSKHRWSD----DAP*QHVQLLSMLHRSSTRAASHLNRAAD----- 202 T G+ ++HSS G+ ++R+ D AP Q + SS AS +A Sbjct: 3263 THGVQIVHSS-GELFQEYRYGDVRTYHAPAQQLTHTQFPVASSISLASRTKTSAQVPPEG 3321 Query: 201 DIEVHARSIAASPSVLRCSSAVAAPVTTPHHNDAAESPPSLMVPPVPHAATLVTTGRGTD 22 + +S +PS AP P PPS +P V A TG Sbjct: 3322 EPLQSTQSAQPAPSTQATQPIPPAPPCQPSQLSQPAQPPSGKIPQVSQEAKGTQTGGVEQ 3381 Query: 21 NRCP 10 R P Sbjct: 3382 TRLP 3385
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 29.3 bits (64), Expect = 8.5 Identities = 23/103 (22%), Positives = 41/103 (39%) Frame = -1 Query: 318 DASSKHRWSDDAP*QHVQLLSMLHRSSTRAASHLNRAADDIEVHARSIAASPSVLRCSSA 139 D + DD + +++L + AA AA ++ + S+ +P Sbjct: 37 DEEDEEEEEDDEDLEELEVLERKPAAGLSAAPVPPAAAPLLDFSSDSVPPAPR----GPL 92 Query: 138 VAAPVTTPHHNDAAESPPSLMVPPVPHAATLVTTGRGTDNRCP 10 AAP T P + E P+ P +P AA ++ + D+ P Sbjct: 93 PAAPPTAPERQPSWERSPAASAPSLPPAAAVLPSKLPEDDEPP 135
>K0355_HUMAN (O15063) Protein KIAA0355| Length = 1070 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = -1 Query: 183 RSIAASPSVLRCSSAVAAPVTTPHHNDAAESPPSLMVPPVPHA 55 +S SP V R +SA A VT PSL VPP P A Sbjct: 660 QSHQGSPLVTRHNSAATAMVTEQKAGAMQPQQPSLPVPPPPRA 702
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 29.3 bits (64), Expect = 8.5 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = -1 Query: 162 SVLRCSSAVAAPVTTPHHNDAAESPPSLMVPPVPHAATLVTTGRGTDNRCPDNT 1 S + SS+ + VTTP ++ + PS V A + TTG + + P +T Sbjct: 460 STVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSST 513
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 29.3 bits (64), Expect = 8.5 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Frame = -1 Query: 300 RWSDDAP*QHVQLLSMLHRSSTRAASHLNRAADDIEVHARSIAASPSVLRC-----SSAV 136 R+ AP + Q+ +H +RA H R +D H + AA+P+ ++A Sbjct: 385 RYPVKAPPEEQQM--RMHARVSRAR-HERRHSDVALPHTEAAAAAPAEATAGKRAPATAR 441 Query: 135 AAPVTTPHHNDAAESPPSLMVPPVPHAA 52 +P +P AA PP+ PP P A Sbjct: 442 VSPPESPRARAAAAQPPTEHGPPPPRPA 469
>GUXB_CELFI (P50899) Exoglucanase B precursor (EC 3.2.1.91)| (Exocellobiohydrolase B) (1,4-beta-cellobiohydrolase B) (CBP120) Length = 1090 Score = 29.3 bits (64), Expect = 8.5 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Frame = +2 Query: 191 TSMSSAARLRCDAARVLLRWSM------DRSCTCCYGASSDHRCFDEASPLLLWSIARPP 352 TS + AA +AA LL W M D S + S H F +PL W+++ P Sbjct: 338 TSPTCAAGQGREAAHYLLSWYMAWGGATDTSSGWAWRIGSSHAHFGYQNPLAAWALSTDP 397 Query: 353 VL 358 L Sbjct: 398 KL 399
>CLD22_MOUSE (Q9D7U6) Claudin-22| Length = 220 Score = 29.3 bits (64), Expect = 8.5 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = +3 Query: 108 CDAGWSPVLRQLSCNATPMAKLRYCVHGPRCHRQH 212 C A WSP P A Y V GPR H+QH Sbjct: 185 CAACWSPA---------PAASSHYAVAGPRDHQQH 210 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,925,038 Number of Sequences: 219361 Number of extensions: 2207032 Number of successful extensions: 6515 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5275 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6474 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
