ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags1a10 |
|---|---|
| Clone Library Name | barley_pub |
>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1534 Score = 312 bits (799), Expect(2) = 5e-90 Identities = 158/171 (92%), Positives = 162/171 (94%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRF+AKPLAELITLQGR Sbjct: 974 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGR 1033 Query: 280 EILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDL 459 EILQNTVDLVQNNLNLEVIYGDTDSIMI+TGLDDIS+AK IAGKVIQEVNKKYRCLEIDL Sbjct: 1034 EILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEVNKKYRCLEIDL 1093 Query: 460 DGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEIGD 612 DG+YKRM YAAIKV LDGSLRENIERKGLDMVRRDWSLLSKEIGD Sbjct: 1094 DGIYKRMLLLKKKKYAAIKVALDGSLRENIERKGLDMVRRDWSLLSKEIGD 1144 Score = 39.3 bits (90), Expect(2) = 5e-90 Identities = 17/20 (85%), Positives = 18/20 (90%) Frame = +3 Query: 30 GNLPNLPTSKATGVLPELLK 89 GN+PNLP SK TGVLPELLK Sbjct: 951 GNVPNLPASKTTGVLPELLK 970
>DPOLA_ARATH (Q9FHA3) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1492 Score = 245 bits (626), Expect(2) = 1e-65 Identities = 126/170 (74%), Positives = 143/170 (84%), Gaps = 1/170 (0%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ VK +K +GLK + DI+QQALKLTANSMYGCLGFSNSRF+AKPLAELITLQGR+I Sbjct: 967 RKSVKLKMKKETGLKYWELDIRQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGRDI 1026 Query: 286 LQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDLDG 465 LQ TVDLVQN+LNLEVIYGDTDSIMI++GLDDI + KAI KVIQEVNKKYRCL+ID DG Sbjct: 1027 LQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIKSKVIQEVNKKYRCLKIDCDG 1086 Query: 466 VYKRMXXXXXXXYAAIKVTL-DGSLRENIERKGLDMVRRDWSLLSKEIGD 612 +YKRM YAA+K+ DG E+IERKG+DMVRRDWSLLSKEIGD Sbjct: 1087 IYKRMLLLRKKKYAAVKLQFKDGKPCEDIERKGVDMVRRDWSLLSKEIGD 1136 Score = 24.6 bits (52), Expect(2) = 1e-65 Identities = 8/18 (44%), Positives = 15/18 (83%) Frame = +3 Query: 36 LPNLPTSKATGVLPELLK 89 +P LP+S+ G+LP+L++ Sbjct: 944 VPRLPSSQTPGILPKLME 961
>DPOLA_RAT (O89042) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| (Fragment) Length = 1451 Score = 166 bits (421), Expect = 4e-41 Identities = 95/176 (53%), Positives = 121/176 (68%), Gaps = 5/176 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQ---QFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITL 270 ERR+ VK +K L Q+DI+Q+ALKLTANSMYGCLGFS SRF+AKPLA L+T Sbjct: 927 ERRKQVKQLMKQQD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTY 985 Query: 271 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLE 450 +GREIL +T ++VQ +NLEVIYGDTDSIMI T ++ + + KV EVNK Y+ LE Sbjct: 986 KGREILMHTKEMVQ-KMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLE 1044 Query: 451 IDLDGVYKRMXXXXXXXYAAIKV--TLDGSLRENIERKGLDMVRRDWSLLSKEIGD 612 ID+DGV+K + YAA+ V T DG+ E KGLD+VRRDW L+K+ G+ Sbjct: 1045 IDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGN 1100
>DPOLA_XENLA (Q9DE46) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1458 Score = 166 bits (421), Expect = 4e-41 Identities = 94/176 (53%), Positives = 121/176 (68%), Gaps = 5/176 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQ---QFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITL 270 ERRR VK +K L Q+DI+Q+ALKLTANSMYGCLGFS SRF+AKPLA L+T Sbjct: 916 ERRRHVKQLMKQPD-LNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTH 974 Query: 271 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLE 450 QGREIL +T ++VQ +NLEVIYGDTDSIMI T +++ + + +V E+NK Y+ LE Sbjct: 975 QGREILLHTKEMVQ-KMNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLE 1033 Query: 451 IDLDGVYKRMXXXXXXXYAAIKV--TLDGSLRENIERKGLDMVRRDWSLLSKEIGD 612 ID+DG++K + YAA+ V T DG E KGLD+VRRDW L+K+ G+ Sbjct: 1034 IDIDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGN 1089
>DPOLA_HUMAN (P09884) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1462 Score = 166 bits (421), Expect = 4e-41 Identities = 95/176 (53%), Positives = 121/176 (68%), Gaps = 5/176 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQ---QFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITL 270 ERR+ VK +K L Q+DI+Q+ALKLTANSMYGCLGFS SRF+AKPLA L+T Sbjct: 920 ERRKQVKQLMKQQD-LNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTY 978 Query: 271 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLE 450 +GREIL +T ++VQ +NLEVIYGDTDSIMI T ++ + + KV EVNK Y+ LE Sbjct: 979 KGREILMHTKEMVQ-KMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLE 1037 Query: 451 IDLDGVYKRMXXXXXXXYAAIKV--TLDGSLRENIERKGLDMVRRDWSLLSKEIGD 612 ID+DGV+K + YAA+ V T DG+ E KGLD+VRRDW L+K+ G+ Sbjct: 1038 IDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGN 1093
>DPOLA_MOUSE (P33609) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1465 Score = 166 bits (419), Expect = 6e-41 Identities = 95/176 (53%), Positives = 120/176 (68%), Gaps = 5/176 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQ---QFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITL 270 ERR+ VK +K L Q+DI+Q+ALKLTANSMYGCLGFS SRF+AKPLA L+T Sbjct: 924 ERRKQVKQLMKQQD-LNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTY 982 Query: 271 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLE 450 +GREIL +T D+VQ +NLEVIYGDTDSIMI T ++ + + KV EVNK Y+ LE Sbjct: 983 KGREILMHTKDMVQ-KMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLE 1041 Query: 451 IDLDGVYKRMXXXXXXXYAAIKV--TLDGSLRENIERKGLDMVRRDWSLLSKEIGD 612 ID+D V+K + YAA+ V T DG+ E KGLD+VRRDW L+K+ G+ Sbjct: 1042 IDIDAVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGN 1097
>DPOA_SCHPO (P28040) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA| polymerase I) Length = 1405 Score = 162 bits (409), Expect = 9e-40 Identities = 88/170 (51%), Positives = 121/170 (71%), Gaps = 2/170 (1%) Frame = +1 Query: 100 ERRRMVKSWLK--TASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQ 273 ERRR +K LK +A+ +R Q+DIQQQALKLTANSMYGCLG++ SRF+A+PLA LIT + Sbjct: 900 ERRRQIKGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYK 959 Query: 274 GREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEI 453 GRE L NT +L + + L+VIYGDTDS+M+ T + D + A I + ++VN++Y LEI Sbjct: 960 GREALMNTKELA-DQMGLQVIYGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEI 1018 Query: 454 DLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 D+D VY+RM YAA++ LD + N++ KGLDM RR++ L+KE Sbjct: 1019 DIDNVYQRMLLHAKKKYAALQ--LDSQGKPNLDVKGLDMKRREFCTLAKE 1066
>DPOA_YEAST (P13382) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA| polymerase I) Length = 1468 Score = 159 bits (401), Expect = 8e-39 Identities = 91/172 (52%), Positives = 121/172 (70%), Gaps = 3/172 (1%) Frame = +1 Query: 100 ERRRMVKSWLKTASGL-KRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 +RRR VK +KT + KR Q DI+QQALKLTANSMYGCLG+ NSRF+AKPLA L+T +G Sbjct: 915 DRRREVKKVMKTETDPHKRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKG 974 Query: 277 REILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEID 456 REIL NT L + ++NL V+YGDTDS+MI TG D+ + A I + VN++YR LEID Sbjct: 975 REILMNTRQLAE-SMNLLVVYGDTDSVMIDTGCDNYADAIKIGLGFKRLVNERYRLLEID 1033 Query: 457 LDGVYKRMXXXXXXXYAAIKVTLD--GSLRENIERKGLDMVRRDWSLLSKEI 606 +D V+K++ YAA+ V LD G+ +E KGLDM RR++ LS+++ Sbjct: 1034 IDNVFKKLLLHAKKKYAALTVNLDKNGNGTTVLEVKGLDMKRREFCPLSRDV 1085
>DPOLA_DROME (P26019) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1488 Score = 157 bits (396), Expect = 3e-38 Identities = 90/175 (51%), Positives = 117/175 (66%), Gaps = 5/175 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLK---RQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITL 270 E R+ VK L A L + Q+ I+Q ALKLTANSMYGCLGF++SRFFA+ LA L+T Sbjct: 930 ESRKEVKK-LMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTH 988 Query: 271 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLE 450 +GREIL NT LVQ +N +V+YGDTDS+MI T + D + I + Q VNK Y+ LE Sbjct: 989 KGREILTNTQQLVQ-KMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLE 1047 Query: 451 IDLDGVYKRMXXXXXXXYAAIKVTLD--GSLRENIERKGLDMVRRDWSLLSKEIG 609 +D+DGV+ + YAAIK++ D G+LR E KGLD+VRRDWS L+ +G Sbjct: 1048 LDIDGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVG 1102
>DPOLA_OXYNO (Q94636) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1492 Score = 154 bits (390), Expect = 1e-37 Identities = 83/174 (47%), Positives = 113/174 (64%), Gaps = 4/174 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 ++R+ VK +KT +K Q +I+Q+A+KLTANSMYGCLGF +SRF A+ +A LIT G Sbjct: 935 QKRKAVKDKMKTEKDHVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHAQAIAALITRTG 994 Query: 277 REILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEID 456 RE L T D+ +N L V+YGDTDSIMI TG + + +A + ++ EVN Y+CLEI+ Sbjct: 995 RETLLRTKDIAENKLGFNVVYGDTDSIMINTGSNQLQQALEMGKRLKGEVNCLYKCLEIE 1054 Query: 457 LDGVYKRMXXXXXXXYAAIK---VTLDGSLRENIERKGLDMVRRDWSLLSKEIG 609 +DGV+K + YAA+K ++ E KGLDMVRRDW LSK +G Sbjct: 1055 IDGVFKSLLLLKKKKYAALKYENFLSPAEVKVVQEMKGLDMVRRDWCPLSKRVG 1108
>DPOLA_TRYBB (P27727) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA| polymerase I) Length = 1339 Score = 150 bits (380), Expect = 2e-36 Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 6/177 (3%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKR-QQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 + RR +K +K+ +I+Q ALKLTANSMYGCLGF SRF+A+PLAEL+T QG Sbjct: 815 DSRREIKRMMKSEKDPGNLAMLEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQG 874 Query: 277 REILQNTVDLV-QNNLNLEVIYGDTDSIMIYTGL-DDISKAKAIAGKVIQEVNKKYRCLE 450 R LQNTV+L+ Q + ++ VIYGDTDS+MI TG+ DDI K + + ++ +VN++Y+ LE Sbjct: 875 RLALQNTVELIPQISPSIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLE 934 Query: 451 IDLDGVYKRMXXXXXXXYAAIKVT---LDGSLRENIERKGLDMVRRDWSLLSKEIGD 612 +D+DGV++ M YAA+ V +G + + E KGLDMVRRDW LS+ + D Sbjct: 935 LDIDGVFRAMLLLRKKKYAALSVVDWQGEGKVYKR-EVKGLDMVRRDWCPLSQHVSD 990
>DPOLA_LEIDO (O00874) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1339 Score = 147 bits (372), Expect = 2e-35 Identities = 89/177 (50%), Positives = 117/177 (66%), Gaps = 6/177 (3%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQF-DIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 + RR VK +K +I+Q+ALKLTANSMYGCLGF SRF A+PLAEL+T QG Sbjct: 817 DSRREVKRLMKIEKDANNLALLEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQG 876 Query: 277 REILQNTVDLV-QNNLNLEVIYGDTDSIMIYTGL-DDISKAKAIAGKVIQEVNKKYRCLE 450 R LQ+TVDL+ Q N +L VIYGDTDS+MI TG+ +DI + + + ++NK+Y+ LE Sbjct: 877 RLALQSTVDLIPQLNPSLRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLE 936 Query: 451 IDLDGVYKRMXXXXXXXYAAIKVT---LDGSLRENIERKGLDMVRRDWSLLSKEIGD 612 ID+DGV++ + YAA+ VT +G + E KGLDMVRRDW LSK + D Sbjct: 937 IDIDGVFRAILLLKKKKYAALTVTDWQGEGKTYKK-EVKGLDMVRRDWCPLSKCVCD 992
>DPOLA_OXYTR (Q27152) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1513 Score = 143 bits (361), Expect = 3e-34 Identities = 81/176 (46%), Positives = 114/176 (64%), Gaps = 5/176 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTAS-GLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 ++R+ VK +K +K Q +I+Q+A+KLTANSMYGCLGF +SRF A+ +A LIT G Sbjct: 965 QKRKAVKEKMKNEKDAVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHAQAIAALITKTG 1024 Query: 277 REILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQ--EVNKKYRCLE 450 R+ L T D+ +N L V+YGDTDSIMI TG + + ++ + GK Q ++ Y+CLE Sbjct: 1025 RDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSLEM-GKRPQGLKLIALYKCLE 1083 Query: 451 IDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENI--ERKGLDMVRRDWSLLSKEIGD 612 I++DGV+K + YAA+K G+ + E KGLDMVRRDW LSK +G+ Sbjct: 1084 IEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGLDMVRRDWCPLSKNVGN 1139
>DPOL_THEGO (P56689) DNA polymerase (EC 2.7.7.7) (TO POL)| Length = 773 Score = 95.1 bits (235), Expect = 1e-19 Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 1/169 (0%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER+++ K T ++++ D +Q+A+K+ ANS YG G++ +R++ K AE +T GR Sbjct: 459 ERQKVKKKMKATIDPIEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGR 518 Query: 280 EILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY-RCLEID 456 + ++ T+ ++ +V+Y DTD D K A + + +N K LE++ Sbjct: 519 QYIETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKLPGLLELE 578 Query: 457 LDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 +G YKR YA I + I +GL++VRRDWS ++KE Sbjct: 579 YEGFYKRGFFVTKKKYAVI------DEEDKITTRGLEIVRRDWSEIAKE 621
>DPOL_THES9 (Q56366) DNA polymerase (EC 2.7.7.7)| Length = 775 Score = 89.0 bits (219), Expect = 1e-17 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 1/169 (0%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER+++ + T L+++ D +Q+A+K+ ANS YG G++ +R++ K AE +T GR Sbjct: 459 ERQKIKRKMKATVDPLEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGR 518 Query: 280 EILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY-RCLEID 456 E ++ + ++ +V+Y DTD + D K A + ++ +N K LE++ Sbjct: 519 EYIEMVIRELEEKFGFKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELE 578 Query: 457 LDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 +G Y R YA I I +GL++VRRDWS ++KE Sbjct: 579 YEGFYVRGFFVTKKKYAVI------DEEGKITTRGLEIVRRDWSEIAKE 621
>DPOL_PYRWO (P61876) DNA polymerase (EC 2.7.7.7) (Pwo polymerase)| Length = 775 Score = 82.8 bits (203), Expect = 7e-16 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 2/170 (1%) Frame = +1 Query: 100 ERRRMVKSWLK-TASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 E R+ +K+ +K T +++ D +Q+A+KL ANS YG G++ +R++ K AE +T G Sbjct: 459 EERQKIKTKMKETQDPIEKILLDYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWG 518 Query: 277 REILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY-RCLEI 453 R+ ++ ++ +V+Y DTD + + + K A + ++ +N K LE+ Sbjct: 519 RKYIELVWKELEEKFGFKVLYIDTDGLYATIPGGESEEIKKKALEFVKYINSKLPGLLEL 578 Query: 454 DLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 + +G YKR YA I + +GL++VRRDWS ++KE Sbjct: 579 EYEGFYKRGFFVTKKRYAVI------DEEGKVITRGLEIVRRDWSEIAKE 622
>DPOL_PYRFU (P61875) DNA polymerase (EC 2.7.7.7) (Pfu polymerase)| Length = 775 Score = 82.8 bits (203), Expect = 7e-16 Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 2/170 (1%) Frame = +1 Query: 100 ERRRMVKSWLK-TASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 E R+ +K+ +K T +++ D +Q+A+KL ANS YG G++ +R++ K AE +T G Sbjct: 459 EERQKIKTKMKETQDPIEKILLDYRQKAIKLLANSFYGYYGYAKARWYCKECAESVTAWG 518 Query: 277 REILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY-RCLEI 453 R+ ++ ++ +V+Y DTD + + + K A + ++ +N K LE+ Sbjct: 519 RKYIELVWKELEEKFGFKVLYIDTDGLYATIPGGESEEIKKKALEFVKYINSKLPGLLEL 578 Query: 454 DLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 + +G YKR YA I + +GL++VRRDWS ++KE Sbjct: 579 EYEGFYKRGFFVTKKRYAVI------DEEGKVITRGLEIVRRDWSEIAKE 622
>DPOL_PYRAB (P77916) DNA polymerase 1 (EC 2.7.7.7) (Pab polymerase)| Length = 771 Score = 79.3 bits (194), Expect = 8e-15 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 4/172 (2%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER+++ K ++ ++++ D +Q+A+K+ ANS YG G++ +R++ K AE +T GR Sbjct: 460 ERQKIKKRMKESKDPVEKKLLDYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGR 519 Query: 280 EILQNTVDLVQNNL---NLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY-RCL 447 + +DLV+ L +V+Y DTD + + K A K ++ +N K L Sbjct: 520 QY----IDLVRRELESRGFKVLYIDTDGLYATIPGAKHEEIKEKALKFVEYINSKLPGLL 575 Query: 448 EIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 E++ +G Y R YA I I +GL++VRRDWS ++KE Sbjct: 576 ELEYEGFYARGFFVTKKKYALI------DEEGKIVTRGLEIVRRDWSEIAKE 621
>DPOL_PBCVN (P30320) DNA polymerase (EC 2.7.7.7)| Length = 913 Score = 78.6 bits (192), Expect = 1e-14 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 11/160 (6%) Frame = +1 Query: 160 FDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNL-NLEVI 336 +D QQ++ K+ NS+YG LG S P+A +T GR+++++T V L EVI Sbjct: 577 YDAQQRSYKIVMNSVYGFLGASRGFIPCVPIAASVTATGRKMIEHTAKRVTELLPGSEVI 636 Query: 337 YGDTDSIMIYTGLDD---------ISKAKAIAGKVIQEVNKKYRC-LEIDLDGVYKRMXX 486 YGDTDS+MI L D AK +AG E+ K ++ +++ + +Y Sbjct: 637 YGDTDSVMIRMKLPDDKIHDMDEQFKMAKWLAG----EITKDFKAPNDLEFEKIYYPYIL 692 Query: 487 XXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEI 606 YAAIK D + ++ KGL +VRRD+S +++EI Sbjct: 693 YSKKRYAAIKFE-DPDEKGKVDVKGLALVRRDFSPITREI 731
>DPOD1_ARATH (Q9LVN7) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1081 Score = 77.4 bits (189), Expect = 3e-14 Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +1 Query: 106 RRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+ K+ LK A L++ D +Q ALK++ANS+YG G + + ++ +T GR+ Sbjct: 663 RKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQ 722 Query: 283 ILQNTVDLVQNNL--------NLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T LV++ N EVIYGDTDS+M+ G+ D+ A + + + ++ + Sbjct: 723 MIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTF 782 Query: 439 -RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEI 606 + ++++ + VY YA + T + + ++ KG++ VRRD LL K + Sbjct: 783 IKPIKLEFEKVYFPYLLINKKRYAGLLWT-NPQQFDKMDTKGIETVRRDNCLLVKNL 838
>DPOL2_AERPE (O93746) DNA polymerase 2 (EC 2.7.7.7) (DNA polymerase II)| Length = 784 Score = 77.4 bits (189), Expect = 3e-14 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%) Frame = +1 Query: 106 RRMVKSWLKT--ASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 RR ++S +K + + D +Q+A+KL AN+ YG +G+ ++R++ + AE +T GR Sbjct: 482 RRQIRSEMKKHPPDSPEYKLLDERQKAIKLLANASYGYMGWPHARWYCRECAEAVTAWGR 541 Query: 280 EILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDL 459 I++ + L LEVIYGDTDS+ + +D K + + V +E+ +I + Sbjct: 542 SIIRTAIRKA-GELGLEVIYGDTDSLFV---KNDPEKVERLIRFVEEELG-----FDIKV 592 Query: 460 DGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 D VY+R+ + +T+DG I+ G + VR DWS L+KE Sbjct: 593 DKVYRRVFFTEAKK-RYVGLTVDG----KIDVVGFEAVRGDWSELAKE 635
>DPOD1_SOYBN (O48901) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1088 Score = 76.3 bits (186), Expect = 7e-14 Identities = 50/177 (28%), Positives = 95/177 (53%), Gaps = 10/177 (5%) Frame = +1 Query: 106 RRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+ K+ LK A L++ D +Q ALK++ANS+YG G + + ++ +T GR+ Sbjct: 630 RKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQ 689 Query: 283 ILQNTVDLVQNNL--------NLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 ++++T LV++ N EVIYGDTDS+M+ G+ + +A + + + ++ + Sbjct: 690 MIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTF 749 Query: 439 -RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEI 606 + ++++ + VY YA + T + + ++ KG++ VRRD LL K + Sbjct: 750 TKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNF-DKMDTKGIETVRRDNCLLVKNL 805
>DPOD1_MESAU (P97283) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1103 Score = 75.9 bits (185), Expect = 9e-14 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 9/169 (5%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+R + L+RQ D +Q ALK++ANS+YG G + +++ +T GR+ Sbjct: 663 RKRAKAELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAEVGKLPCLEISQSVTGFGRQ 722 Query: 283 ILQNTVDLVQN--------NLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T LV++ N N +V+YGDTDS+M G+ +++A ++ + V+ + Sbjct: 723 MIEKTKQLVESKYTLENGYNANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHF 782 Query: 439 RC-LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + ++ + VY YA + + + ++ KGL+ VRRD Sbjct: 783 PSPIRLEFEKVYFPYLLISKKRYAGLLFSSQPDTHDRMDCKGLEAVRRD 831
>DPOD1_BOVIN (P28339) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1106 Score = 75.5 bits (184), Expect = 1e-13 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+R K L+RQ D +Q ALK++ANS+YG G R +++ +T GR+ Sbjct: 666 RKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVTGFGRQ 725 Query: 283 ILQNTVDLVQNNLNLE--------VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T LV+ +E V+YGDTDS+M G+ +++A A+ + V+ + Sbjct: 726 MIEKTKQLVETKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHF 785 Query: 439 RC-LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + ++ + VY YA + + + ++ KGL+ VRRD Sbjct: 786 PSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRD 834
>DPOL_ARCFU (O29753) DNA polymerase (EC 2.7.7.7)| Length = 781 Score = 75.5 bits (184), Expect = 1e-13 Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 2/171 (1%) Frame = +1 Query: 100 ERRRMVKSWLKTAS--GLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQ 273 E+RR +K LK S + + DI+QQ LK+ NS YG +G++ +R++ P AE T Sbjct: 463 EKRRELKVELKNLSPESSEYKLLDIKQQTLKVLTNSFYGYMGWNLARWYCHPCAEATTAW 522 Query: 274 GREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEI 453 GR ++ + + ++ + +V+YGDTDSI + K ++I +++++ ++I Sbjct: 523 GRHFIRTSAKIAES-MGFKVLYGDTDSIFV----TKAGMTKEDVDRLIDKLHEELP-IQI 576 Query: 454 DLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEI 606 ++D Y + YA + T DG L KGL++ R DW L+K++ Sbjct: 577 EVDEYYSAIFFVEKKRYAGL--TEDGRL----VVKGLEVRRGDWCELAKKV 621
>DPOL_PBCV1 (P30321) DNA polymerase (EC 2.7.7.7)| Length = 913 Score = 75.5 bits (184), Expect = 1e-13 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Frame = +1 Query: 130 KTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLV 309 + K +D QQ++ K+ NS+YG LG S P+A +T GR+++++T Sbjct: 567 RNGDDFKEALYDAQQRSFKVVMNSVYGFLGASKGFIPCVPIAASVTATGRKMIEHTAKRA 626 Query: 310 QNNL-NLEVIYGDTDSIMIYTGLDD---------ISKAKAIAGKVIQEVNKKYRC-LEID 456 L EVIYGDTDS+M+ L D AK +AG E+ K +R +++ Sbjct: 627 VELLPGSEVIYGDTDSVMVKMKLPDDKVHDMDEQFKMAKWLAG----EITKDFRAPNDLE 682 Query: 457 LDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEI 606 + +Y YAA+K + + ++ KGL +VRRD+S ++++I Sbjct: 683 FEKIYYPYILYSKKRYAAVKFE-EPDEKGKVDVKGLALVRRDFSPITRDI 731
>DPOL_PYRKO (P77933) DNA polymerase (EC 2.7.7.7) [Contains: Endonuclease PI-PkoI| (EC 3.1.-.-) (Pko pol-1 intein) (IVS-A); Endonuclease PI-PkoII (EC 3.1.-.-) (Pko pol-2 intein) (IVS-B)] Length = 1671 Score = 75.5 bits (184), Expect = 1e-13 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Frame = +1 Query: 196 NSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGL 375 NS YG G++ +R++ K AE +T GRE + T+ ++ +VIY DTD Sbjct: 1388 NSYYGYYGYARARWYCKECAESVTAWGREYITMTIKEIEEKYGFKVIYSDTDGFFATIPG 1447 Query: 376 DDISKAKAIAGKVIQEVNKKY-RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIE 552 D K A + ++ +N K LE++ +G YKR YA I I Sbjct: 1448 ADAETVKKKAMEFLKYINAKLPGALELEYEGFYKRGFFVTKKKYAVI------DEEGKIT 1501 Query: 553 RKGLDMVRRDWSLLSKE 603 +GL++VRRDWS ++KE Sbjct: 1502 TRGLEIVRRDWSEIAKE 1518
>DPOD1_HUMAN (P28340) DNA polymerase delta catalytic subunit (EC 2.7.7.7) (DNA| polymerase delta subunit p125) Length = 1107 Score = 74.7 bits (182), Expect = 2e-13 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+R K L+RQ D +Q ALK++ANS+YG G + +++ +T GR+ Sbjct: 667 RKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQ 726 Query: 283 ILQNTVDLVQNNLNLE--------VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T LV++ +E V+YGDTDS+M G+ +++A A+ + V+ + Sbjct: 727 MIEKTKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHF 786 Query: 439 RC-LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + ++ + VY YA + + + ++ KGL+ VRRD Sbjct: 787 PSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRD 835
>DPOD1_MOUSE (P52431) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1105 Score = 73.9 bits (180), Expect = 3e-13 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 9/169 (5%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+R + L+RQ D +Q ALK++ANS+YG G + +++ +T GR+ Sbjct: 665 RKRAKAELAQETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQ 724 Query: 283 ILQNTVDLVQN--------NLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T LV++ + N +V+YGDTDS+M G+ +++A ++ + V+ + Sbjct: 725 MIEKTKQLVESKYTVENGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHF 784 Query: 439 RC-LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + ++ + VY YA + + + ++ KGL+ VRRD Sbjct: 785 PSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDKMDCKGLEAVRRD 833
>DPOD_SCHPO (P30316) DNA polymerase delta catalytic subunit (EC 2.7.7.7) (DNA| polymerase III) Length = 1086 Score = 73.2 bits (178), Expect = 6e-13 Identities = 48/169 (28%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Frame = +1 Query: 106 RRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+ K+ LK + K+ D +Q ALK++ANS+YG G +N R ++ +T GR+ Sbjct: 653 RKKAKADLKKETDPFKKAVLDGRQLALKVSANSVYGFTGATNGRLPCLAISSSVTSYGRQ 712 Query: 283 ILQNTVDLVQNNLNLE--------VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T D+V+ +E VIYGDTDS+M+ G+ + +A + + V+ ++ Sbjct: 713 MIEKTKDVVEKRYRIENGYSHDAVVIYGDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQF 772 Query: 439 -RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 ++++ + VY YA + T + + ++ KG++ VRRD Sbjct: 773 PNPIKLEFEKVYFPYLLISKKRYAGLFWTRTDTY-DKMDSKGIETVRRD 820
>DPOD1_ORYSA (Q9LRE6) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1105 Score = 72.8 bits (177), Expect = 7e-13 Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 10/177 (5%) Frame = +1 Query: 106 RRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+ K+ LK A +R D +Q ALK++ANS+YG G + + ++ +T GR+ Sbjct: 673 RKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQ 732 Query: 283 ILQNTVDLVQNNL--------NLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 ++++T LV++ N EVIYGDTDS+M+ G+ + A + + ++ + Sbjct: 733 MIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTF 792 Query: 439 -RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEI 606 + ++++ + +Y YA + T + + ++ KG++ VRRD LL K + Sbjct: 793 IKPIKLEFEKIYFPYLLISKKRYAGLYWT-NPEKFDKMDTKGIETVRRDNCLLVKNL 848
>DPOD1_RAT (O54747) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1103 Score = 72.4 bits (176), Expect = 1e-12 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+R + L+RQ D +Q ALK++ NS+YG G + +++ +T GR+ Sbjct: 663 RKRAKAELAQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVTGFGRQ 722 Query: 283 ILQNTVDLVQNNLNLE--------VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T LV+ LE V+YGDTDS+M G+ +++A ++ + V+ + Sbjct: 723 MIEKTKQLVETKYTLENGYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHF 782 Query: 439 RC-LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + ++ + VY YA + + + ++ KGL+ VRRD Sbjct: 783 PSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDRMDCKGLEAVRRD 831
>DPOL_METVO (P52025) DNA polymerase (EC 2.7.7.7)| Length = 824 Score = 71.6 bits (174), Expect = 2e-12 Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 30/197 (15%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQ-------QQALKLTANSMYGCLGFSNSRFFAKPLAEL 261 RR+ +K LK +++ +FD + Q+++K+ ANS YG L F +R+++ AE+ Sbjct: 494 RRKHIKMLLKDK--IQKNEFDEEYSRLEHEQKSIKVLANSHYGYLAFPMARWYSDKCAEM 551 Query: 262 ITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAK--------------- 396 +T GR+ +Q T++ + +VIY DTD D + K K Sbjct: 552 VTGLGRKYIQETIEKAE-EFGFKVIYADTDGFYAKWDYDKLQKGKKEENDKSDKLSNLPK 610 Query: 397 -------AIAGKVIQEVNKKY-RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIE 552 + K ++ +N++ +E++ +G +KR YA I+ DG +I Sbjct: 611 LSKEELIILTKKFLKGINEELPEGMELEFEGHFKRGLFVTKKKYALIED--DG----HIV 664 Query: 553 RKGLDMVRRDWSLLSKE 603 KGL++VRRDWS ++K+ Sbjct: 665 VKGLEVVRRDWSNIAKD 681
>DPOD_PLAFK (P30315) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1094 Score = 70.1 bits (170), Expect = 5e-12 Identities = 49/180 (27%), Positives = 97/180 (53%), Gaps = 11/180 (6%) Frame = +1 Query: 100 ERRRMVKSWLKTA-SGLKRQQFDIQQQALKLTANSMYGCLGFSNS-RFFAKPLAELITLQ 273 E R+ VK +K + + + + +Q ALK++ANS+YG G S+ + +A IT Sbjct: 662 EARKKVKLLIKNEKNNITKMVLNGRQLALKISANSVYGYTGASSGGQLPCLEVAVSITTL 721 Query: 274 GREILQNTVDLVQN--------NLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVN 429 GR +++ T + V++ N VIYGDTDS+M+ G ++I +A + + ++ Sbjct: 722 GRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMVKFGTNNIEEAMTLGKDAAERIS 781 Query: 430 KKYRC-LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSKEI 606 K++ ++++ + VY YA + T + + + ++ KG++ VRRD+ +L +++ Sbjct: 782 KEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYT-NPNKHDKMDCKGIETVRRDFCILIQQM 840
>DPOD_DROME (P54358) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1092 Score = 67.0 bits (162), Expect = 4e-11 Identities = 48/173 (27%), Positives = 90/173 (52%), Gaps = 10/173 (5%) Frame = +1 Query: 106 RRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+ K+ LK + KR+ D +Q ALK++ANS+YG G + ++ +T GR Sbjct: 656 RKRAKNDLKVETDPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRT 715 Query: 283 ILQNTVDLVQNNL--------NLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T + V+++ N VIYGDTDS+M+ G+ + ++ + + + V+ K+ Sbjct: 716 MIEMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSMELGREAAELVSSKF 775 Query: 439 -RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLL 594 ++++ + VY YA + T + + ++ KG++ VRRD S L Sbjct: 776 VHPIKLEFEKVYYPYLLINKKRYAGLYFTRPDTY-DKMDCKGIETVRRDNSPL 827
>DPOD_CAEEL (P90829) DNA polymerase delta catalytic subunit (EC 2.7.7.7)| Length = 1081 Score = 66.6 bits (161), Expect = 5e-11 Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 13/182 (7%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+R KR ++ +Q ALK++ANS+YG G + + +++ +T GR+ Sbjct: 635 RKRAKNDMKNEKDEFKRMVYNGRQLALKISANSVYGFTGATVGKLPCLEISQSVTAFGRK 694 Query: 283 ILQNTVDLVQN-----------NLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVN 429 ++ T V+ + +VIYGDTDS+M+ G++ +++A I +EV+ Sbjct: 695 MIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVS 754 Query: 430 KKYR-CLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD-WSLLSKE 603 K + ++++ + VY YA + T + + ++ KGL+ VRRD L++K Sbjct: 755 KIFTPPIKLEFEKVYSPYLLINKKRYAGLYFT-KPDVHDKMDCKGLETVRRDNCPLVAKV 813 Query: 604 IG 609 +G Sbjct: 814 LG 815
>DPO2_ECOLI (P21189) DNA polymerase II (EC 2.7.7.7) (Pol II)| Length = 782 Score = 65.9 bits (159), Expect = 9e-11 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 16/168 (9%) Frame = +1 Query: 148 KRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNL 327 KRQ QALK+ N+ YG LG + RFF LA IT++G +I++ T L++ Sbjct: 480 KRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQ-GY 538 Query: 328 EVIYGDTDSIMIY-TGLDDISKAKAIAGKVIQEVN-------KKYR---CLEIDLDGVYK 474 +VIYGDTDS ++ G +A I ++Q VN +K R LE++ + + Sbjct: 539 DVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFC 598 Query: 475 R-MXXXXXXXYAAIKVTLDGSLRENIER----KGLDMVRRDWSLLSKE 603 R + K G ++E ++ KGL+ VR DW+ L+++ Sbjct: 599 RFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQ 646
>DPOD_CANAL (P46588) DNA polymerase delta catalytic subunit (EC 2.7.7.7) (DNA| polymerase III) Length = 1038 Score = 65.5 bits (158), Expect = 1e-10 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 10/169 (5%) Frame = +1 Query: 106 RRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+ K+ LK + K+ + +Q ALK++ANS+YG G + + ++ +T GRE Sbjct: 602 RKKAKADLKKETDPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAFGRE 661 Query: 283 ILQNTVDLVQ--------NNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 +++ T + VQ + + +VIYGDTDS+M+ G D+ + + V+ K+ Sbjct: 662 MIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQDLETCMKLGEEAANYVSTKF 721 Query: 439 R-CLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + ++++ + VY YA + T + ++ KG++ VRRD Sbjct: 722 KNPIKLEFEKVYFPYLLINKKRYAGLYWTRPEKF-DKMDTKGIETVRRD 769
>DPOL1_AERPE (O93745) DNA polymerase 1 (EC 2.7.7.7) (DNA polymerase I)| Length = 959 Score = 65.1 bits (157), Expect = 2e-10 Identities = 38/119 (31%), Positives = 65/119 (54%) Frame = +1 Query: 118 KSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNT 297 KS K+ +R +D+ Q A+K+ N+ YG G ++ P+AE +T GR +L+ T Sbjct: 663 KSKDKSLREEERLWYDVVQSAMKVYINASYGVFGSEKFSLYSLPVAESVTALGRAVLRGT 722 Query: 298 VDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDLDGVYK 474 ++ LNL ++YGDTDS+ I+ K + ++ V + Y LE++LD V++ Sbjct: 723 LE-KSRELNLHIVYGDTDSLFIW------DPPKDVLNDLVDYVERTYG-LELELDKVFR 773
>DPOL_PYRHO (O59610) DNA polymerase (EC 2.7.7.7) [Contains: Pho pol intein (Pho| Pol I intein)] Length = 1235 Score = 64.7 bits (156), Expect = 2e-10 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 5/141 (3%) Frame = +1 Query: 196 NSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNL---NLEVIYGDTDSI-MI 363 NS YG G++ +R++ K AE +T GR+ +DLV+ L +V+Y DTD + Sbjct: 952 NSYYGYYGYAKARWYCKECAESVTAWGRQY----IDLVRRELEARGFKVLYIDTDGLYAT 1007 Query: 364 YTGLDDISKAKAIAGKVIQEVNKKY-RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLR 540 G+ D + K A + + +N K LE++ +G Y R YA I Sbjct: 1008 IPGVKDWEEVKRRALEFVDYINSKLPGVLELEYEGFYARGFFVTKKKYALI------DEE 1061 Query: 541 ENIERKGLDMVRRDWSLLSKE 603 I +GL++VRRDWS ++KE Sbjct: 1062 GKIVTRGLEIVRRDWSEIAKE 1082
>DPOL_METJA (Q58295) DNA polymerase (EC 2.7.7.7) [Contains: Mja pol-1 intein; Mja| pol-2 intein] Length = 1634 Score = 64.3 bits (155), Expect = 3e-10 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Frame = +1 Query: 196 NSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGL 375 NS+YG L F +RF+++ AE++T GR+ + TV + +V+Y DTD Sbjct: 1358 NSVYGYLAFPRARFYSRECAEIVTYLGRKYILETVKEAE-KFGFKVLYIDTDGFYA-IWK 1415 Query: 376 DDISKAKAI--AGKVIQEVNKKY-RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLREN 546 + ISK + I A + ++ +N K +E++ +G +KR YA I D + R Sbjct: 1416 EKISKEELIKKAMEFVEYINSKLPGTMELEFEGYFKRGIFVTKKRYALI----DENGRVT 1471 Query: 547 IERKGLDMVRRDWSLLSK 600 + KGL+ VRRDWS ++K Sbjct: 1472 V--KGLEFVRRDWSNIAK 1487
>DPOL1_SULAC (P95690) DNA polymerase 1 (EC 2.7.7.7) (DNA polymerase I)| Length = 876 Score = 63.2 bits (152), Expect = 6e-10 Identities = 39/109 (35%), Positives = 60/109 (55%) Frame = +1 Query: 148 KRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNL 327 +R +D+ Q+A+K+ N+ YG G N +A +AE +T GR I+ T + LNL Sbjct: 589 QRSLYDVVQRAMKVFINATYGVFGAENFPLYAPAVAESVTAIGRYIITTTYKQAE-KLNL 647 Query: 328 EVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDLDGVYK 474 +VIYGDTDS+ +Y D K + + V Q N L++++D YK Sbjct: 648 KVIYGDTDSLFLYNPTKD--KLEELIKFVKQNFN-----LDLEVDKSYK 689
>DPOL_THEFM (P74918) DNA polymerase (EC 2.7.7.7) (Pol Tfu) [Contains:| Endonuclease PI-TfuI (EC 3.1.-.-) (Tfu pol-1 intein); Endonuclease PI-TfuII (EC 3.1.-.-) (Tfu pol-2 intein)] Length = 1523 Score = 62.4 bits (150), Expect = 1e-09 Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER+++ K T ++++ D +Q+A+K+ ANS YG G++ +R++ K AE +T GR Sbjct: 819 ERQKVKKHMKATVDPIEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGR 878 Query: 280 EILQNTVDLVQNNLNLEVIY-----GDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRC 444 + ++ T+ ++ +V+Y GDT+ + G + + + +V V +K C Sbjct: 879 QYIETTMREIEEKFGFKVLYADSVTGDTEVTIRRNGRIEFVPIEKLFERVDHRVGEKEYC 938 Query: 445 L 447 + Sbjct: 939 V 939 Score = 37.0 bits (84), Expect = 0.045 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = +1 Query: 331 VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYR-CLEIDLDGVYKRMXXXXXXXYA 507 ++ +TD D K A + + +N K LE++ +G Y+R YA Sbjct: 1285 ILVHNTDGFFATIPGADAETVKKKAREFLNYINPKLPGLLELEYEGFYRRGFFVTKKKYA 1344 Query: 508 AIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 I I +GL++VRRDWS ++KE Sbjct: 1345 VIDE------EGKITTRGLEIVRRDWSEVAKE 1370
>DPOL_PYRSD (Q51334) DNA polymerase (EC 2.7.7.7) (Deep vent DNA polymerase)| [Contains: Endonuclease PI-PspI (EC 3.1.-.-) (Psp-GDB pol intein)] Length = 1312 Score = 62.0 bits (149), Expect = 1e-09 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Frame = +1 Query: 196 NSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGL 375 NS YG G++ +R++ K AE +T GRE ++ ++ +V+Y DTD + Sbjct: 1029 NSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFGFKVLYIDTDGLYATIPG 1088 Query: 376 DDISKAKAIAGKVIQEVNKKY-RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIE 552 + K A + + +N K LE++ +G Y R YA I I Sbjct: 1089 AKPEEIKKKALEFVDYINAKLPGLLELEYEGFYVRGFFVTKKKYALI------DEEGKII 1142 Query: 553 RKGLDMVRRDWSLLSKE 603 +GL++VRRDWS ++KE Sbjct: 1143 TRGLEIVRRDWSEIAKE 1159
>DPOL1_SULOH (O50607) DNA polymerase 1 (EC 2.7.7.7) (DNA polymerase I) (DNA| polymerase B1) Length = 872 Score = 62.0 bits (149), Expect = 1e-09 Identities = 35/109 (32%), Positives = 66/109 (60%) Frame = +1 Query: 148 KRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNL 327 +R +D+ Q+A+K+ N+ YG G N +A +AE +T GR ++ TV+ + ++ L Sbjct: 589 QRSVYDVVQRAMKVFINATYGVFGAENFPLYAPAVAESVTAIGRYVITTTVNYCR-SIGL 647 Query: 328 EVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDLDGVYK 474 +V+YGDTDS+ ++ + +K ++I+ V K+ L++++D VYK Sbjct: 648 QVLYGDTDSMFLW------NPSKEKLEEIIKFVKGKFG-LDLEVDKVYK 689
>DPOL_FOWPV (P21402) DNA polymerase (EC 2.7.7.7)| Length = 988 Score = 61.6 bits (148), Expect = 2e-09 Identities = 59/212 (27%), Positives = 88/212 (41%), Gaps = 44/212 (20%) Frame = +1 Query: 103 RRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +R+ K+ LKTAS ++ +D Q K+ ANS+YG +GFSNS ++ A+ T GR Sbjct: 619 KRKEYKNLLKTASTTIESTLYDSLQYIYKIIANSVYGLMGFSNSTLYSYSSAKTCTTIGR 678 Query: 280 EILQNTVDLVQN-------------------------NLNLEV-----------IYGDTD 351 ++ +D + N N LEV +YGDTD Sbjct: 679 NMI-TYLDSIMNGAVWENDKLILADFPRNIFSGETMFNKELEVPNMNESFKFRSVYGDTD 737 Query: 352 SIMIYTGLDDISKAKAIAGKVIQEVNKK--YRCLEIDLDGVYKRMXXXXXXXYAAIKVTL 525 SI DI K IA + +N K + +I+ + +Y ++ Y IK Sbjct: 738 SIFSEISTKDIEKTAKIAKHLEHIINTKILHANFKIEFEAIYTQLILQSKKKYTTIKYLA 797 Query: 526 -----DGSLRENIERKGLDMVRRDWSLLSKEI 606 D +R N KG RRD +L K + Sbjct: 798 NYKPGDKPIRVN---KGTSETRRDVALFHKHM 826
>DPOD_YEAST (P15436) DNA polymerase delta catalytic subunit (EC 2.7.7.7) (DNA| polymerase III) Length = 1097 Score = 61.2 bits (147), Expect = 2e-09 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGRE 282 R+R K KR + +Q ALK++ANS+YG G + + ++ +T GR Sbjct: 674 RKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAYGRT 733 Query: 283 ILQNTVDLVQNNLNLE--------VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY 438 ++ T VQ ++ V+YGDTDS+M+ G D+ +A + + + V+ + Sbjct: 734 MILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLF 793 Query: 439 R-CLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + + ++ + Y YA + T + +++KGL VRRD Sbjct: 794 KHPINLEFEKAYFPYLLINKKRYAGLFWTNPDKF-DKLDQKGLASVRRD 841
>DPOL_VACCV (P06856) DNA polymerase (EC 2.7.7.7)| Length = 1006 Score = 60.1 bits (144), Expect = 5e-09 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 41/210 (19%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER R K + S ++ +D Q K+ ANS+YG +GF NS ++ A+ T GR Sbjct: 633 ERARYKKMLKQATSSTEKAIYDSMQYTYKIVANSVYGLMGFRNSALYSYASAKSCTSIGR 692 Query: 280 EIL-------------------------------QNTVDLVQNNLNLEV------IYGDT 348 ++ ++ +V+ +L ++ +YGDT Sbjct: 693 RMILYLESVLNGAELSNGMLRFANPLSNPFYMDDRDINPIVKTSLPIDYRFRFRSVYGDT 752 Query: 349 DSIMIYTGLDDISKAKAIAGKVIQEVNKK--YRCLEIDLDGVYKRMXXXXXXXYAAIKVT 522 DS+ D+ K+ IA ++ + +N + + +I+ + VYK + Y +K + Sbjct: 753 DSVFTEIDSQDVDKSIEIAKELERLINNRVLFNNFKIEFEAVYKNLIMQSKKKYTTMKYS 812 Query: 523 LDGSLRENIER--KGLDMVRRDWSLLSKEI 606 + + ER KG RRD S K + Sbjct: 813 ASSNSKSVPERINKGTSETRRDVSKFHKNM 842
>DPOL_VACCC (P20509) DNA polymerase (EC 2.7.7.7)| Length = 1006 Score = 60.1 bits (144), Expect = 5e-09 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 41/210 (19%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER R K + S ++ +D Q K+ ANS+YG +GF NS ++ A+ T GR Sbjct: 633 ERARYKKMLKQATSSTEKAIYDSMQYTYKIVANSVYGLMGFRNSALYSYASAKSCTSIGR 692 Query: 280 EIL-------------------------------QNTVDLVQNNLNLEV------IYGDT 348 ++ ++ +V+ +L ++ +YGDT Sbjct: 693 RMILYLESVLNGAELSNGMLRFANPLSNPFYMDDRDINPIVKTSLPIDYRFRFRSVYGDT 752 Query: 349 DSIMIYTGLDDISKAKAIAGKVIQEVNKK--YRCLEIDLDGVYKRMXXXXXXXYAAIKVT 522 DS+ D+ K+ IA ++ + +N + + +I+ + VYK + Y +K + Sbjct: 753 DSVFTEIDSQDVDKSIEIAKELERLINNRVLFNNFKIEFEAVYKNLIMQSKKKYTTMKYS 812 Query: 523 LDGSLRENIER--KGLDMVRRDWSLLSKEI 606 + + ER KG RRD S K + Sbjct: 813 ASSNSKSVPERINKGTSETRRDVSKFHKNM 842
>DPOL_VACCA (O57191) DNA polymerase (EC 2.7.7.7)| Length = 1006 Score = 60.1 bits (144), Expect = 5e-09 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 41/210 (19%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER R K + S ++ +D Q K+ ANS+YG +GF NS ++ A+ T GR Sbjct: 633 ERARYKKMLKQATSSTEKAIYDSMQYTYKIVANSVYGLMGFRNSALYSYASAKSCTSIGR 692 Query: 280 EIL-------------------------------QNTVDLVQNNLNLEV------IYGDT 348 ++ ++ +V+ +L ++ +YGDT Sbjct: 693 RMILYLESVLNGAELSNGMLRFANPLSNPFYMDDRDINPIVKTSLPIDYRFRFRSVYGDT 752 Query: 349 DSIMIYTGLDDISKAKAIAGKVIQEVNKK--YRCLEIDLDGVYKRMXXXXXXXYAAIKVT 522 DS+ D+ K+ IA ++ + +N + + +I+ + VYK + Y +K + Sbjct: 753 DSVFTEIDSQDVDKSIEIAKELERLINNRVLFNNFKIEFEAVYKNLIMQSKKKYTTMKYS 812 Query: 523 LDGSLRENIER--KGLDMVRRDWSLLSKEI 606 + + ER KG RRD S K + Sbjct: 813 ASSNSKSVPERINKGTSETRRDVSKFHKNM 842
>DPOZ_YEAST (P14284) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)| Length = 1504 Score = 60.1 bits (144), Expect = 5e-09 Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 7/145 (4%) Frame = +1 Query: 169 QQQALKLTANSMYGCLGFSNS-RFFAKPLAELITLQGREILQNTVDLVQNN--LNLEVIY 339 +Q ALKL AN YG S S R LA+ I GRE L+ +D+++ + N +V+Y Sbjct: 1081 KQLALKLLANVTYGYTSASFSGRMPCSDLADSIVQTGRETLEKAIDIIEKDETWNAKVVY 1140 Query: 340 GDTDSIMIY----TGLDDISKAKAIAGKVIQEVNKKYRCLEIDLDGVYKRMXXXXXXXYA 507 GDTDS+ +Y T ++ S A+A +V Q K + + + VY Y Sbjct: 1141 GDTDSLFVYLPGKTAIEAFSIGHAMAERVTQNNPKP---IFLKFEKVYHPSILISKKRYV 1197 Query: 508 AIKVTLDGSLRENIERKGLDMVRRD 582 + KG++ VRRD Sbjct: 1198 GFSYESPSQTLPIFDAKGIETVRRD 1222
>DPOL_VARV (P33793) DNA polymerase (EC 2.7.7.7)| Length = 1005 Score = 59.7 bits (143), Expect = 7e-09 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 41/210 (19%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER R K + S ++ +D Q K+ ANS+YG +GF NS ++ A+ T GR Sbjct: 632 ERARYKKMLKQATSSTEKAIYDSMQYTYKIIANSVYGLMGFRNSALYSYASAKSCTSIGR 691 Query: 280 EIL-------------------------------QNTVDLVQNNLNLEV------IYGDT 348 ++ ++ +V+ +L ++ +YGDT Sbjct: 692 RMILYLESVLNGAELSNGMLRFANPLSNPFYMDDRDINPIVKTSLPIDYRFRFRSVYGDT 751 Query: 349 DSIMIYTGLDDISKAKAIAGKVIQEVNKK--YRCLEIDLDGVYKRMXXXXXXXYAAIKVT 522 DS+ D+ K+ IA ++ + +N + + +I+ + VYK + Y +K + Sbjct: 752 DSVFTEIDSQDVDKSIEIAKELERLINSRVLFNNFKIEFEAVYKNLIMQSKKKYTTMKYS 811 Query: 523 LDGSLRENIER--KGLDMVRRDWSLLSKEI 606 + + ER KG RRD S K + Sbjct: 812 ASSNSKSVPERINKGTSETRRDVSKFHKNM 841
>DPOL_MCMVS (P27172) DNA polymerase (EC 2.7.7.7)| Length = 1097 Score = 57.4 bits (137), Expect = 3e-08 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 25/184 (13%) Frame = +1 Query: 103 RRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +R++V+ +K + ++R D QQ ALK+T N+ YG G + P+A IT GR Sbjct: 688 QRKLVREAMKQCTNEMQRMIMDKQQLALKVTCNAFYGFTGVAAGMLPCLPIAASITKIGR 747 Query: 280 EILQNTVDLVQNNLN----------------------LEVIYGDTDSIM-IYTGLDDISK 390 ++L T +++ N +++IYGDTDS+ + G+D + Sbjct: 748 DMLLATAGHIEDRCNRPDFLRTVLGLPPEAIDPEALRVKIIYGDTDSVFAAFYGIDKEAL 807 Query: 391 AKAIAGKVIQEVNKKYR-CLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLD 567 KA+ N ++ + ++ + ++ + Y + GS +N+ KG+D Sbjct: 808 LKAVGALAANVTNALFKEPVRLEFEKMFVSLMMICKKRYIG---KVHGS--QNLSMKGVD 862 Query: 568 MVRR 579 +VRR Sbjct: 863 LVRR 866
>DPOL_METTH (O27276) DNA polymerase (EC 2.7.7.7)| Length = 586 Score = 55.8 bits (133), Expect = 9e-08 Identities = 28/84 (33%), Positives = 48/84 (57%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 ER R+ + + ++R+ ++QQ+ALK AN+MYG G+S R+++ AE IT GR Sbjct: 496 ERVRIKEEMKGSDDPMERKILNVQQEALKRLANTMYGVYGYSRFRWYSMECAEAITAWGR 555 Query: 280 EILQNTVDLVQNNLNLEVIYGDTD 351 + ++ T+ + +Y DTD Sbjct: 556 DYIKKTIKTAE-EFGFHTVYADTD 578
>DPOL_ORFN2 (Q84173) DNA polymerase (EC 2.7.7.7)| Length = 1008 Score = 54.3 bits (129), Expect = 3e-07 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 47/208 (22%) Frame = +1 Query: 100 ERRRMVKSWLKTA-SGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 + R K +K A + + R+ ++ Q K+TANS+YG +GF NS F+ A+ T G Sbjct: 634 DARAKYKKLMKAAETAVDREIYNSMQYTYKITANSVYGLMGFRNSALFSYASAKSCTAIG 693 Query: 277 REI---LQNTVD------------------------LVQNNLNLEV-------------- 333 R + L+ T+D LE+ Sbjct: 694 RTMIAYLERTLDGASVCGTRLSLAAAPDNPLLRDEAFAGRAAELEIDAAVAGERTERVGF 753 Query: 334 --IYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKK--YRCLEIDLDGVYKRMXXXXXXX 501 +YGDTDS+ + G DI+ ++ + + + +N+ + +++ + VY + Sbjct: 754 RSVYGDTDSVFLEVGASDIAFSRRVGRCLERVINEHVLFANFKVEFEAVYCNLIMQSKKK 813 Query: 502 YAAIKVTL-DGSLRENIERKGLDMVRRD 582 Y IK + DG E + KG RRD Sbjct: 814 YTTIKFAVSDGGGSERVS-KGTSETRRD 840
>DPOL_GPCMV (Q69025) DNA polymerase (EC 2.7.7.7)| Length = 1094 Score = 53.9 bits (128), Expect = 4e-07 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 24/184 (13%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +R+ + K + +++ D Q ALK+T N+ YG G S+ P+A IT GR Sbjct: 712 KRKSVRKVLAECQDEVEKLILDKYQLALKVTCNAFYGFTGVSSGMMPCLPIAAAITRIGR 771 Query: 280 EILQNTVDLVQ--------------------NNLNLEVIYGDTDSIMIYTG----LDDIS 387 ++L + VD V + LN++VIYGDTDS+ + G + Sbjct: 772 DMLMSVVDYVNTYMGHAEFWLRYLGEEDLTGDALNVKVIYGDTDSVFVICGGVKCGSVLE 831 Query: 388 KAKAIAGKVIQEVNKKYRCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLD 567 +AIAG + + + ++ ++++ + V+ + Y + G + + KG++ Sbjct: 832 HGEAIAGHITRALFRE--PIKLEFEKVFVNLMMICKKRYVG---RIYGQTK--LSMKGIE 884 Query: 568 MVRR 579 +VR+ Sbjct: 885 LVRK 888
>DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7)| Length = 947 Score = 53.9 bits (128), Expect = 4e-07 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 6/173 (3%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLK-RQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 E R V++ +KT R D +Q A K++ANS+YG +G A T G Sbjct: 574 ESRARVRARIKTTDDPDIRAVLDKKQLAYKISANSVYGTMGTQRGYLPFMAGAMTTTYCG 633 Query: 277 REILQNTVDLVQNNLNLEVIYGDTDSIMIYTG-----LDDISKAKAIAGKVIQEVNKKYR 441 R++++ L++ + ++YGDTDS I G LD++ + A + ++ Sbjct: 634 RKLIEKAAHLLKTVVGATIVYGDTDSCYIQLGHDRASLDELWQMAVNASDTVSAFFERPV 693 Query: 442 CLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRDWSLLSK 600 LE + +Y + Y T DG R KG+ + RRD ++ ++ Sbjct: 694 RLEFE-QCIYTKFIIFTKKRYVYRAFTRDGKQRTG--SKGVMLSRRDSAMCAR 743
>DPOL1_SULSO (P26811) DNA polymerase 1 (EC 2.7.7.7) (DNA polymerase I)| Length = 882 Score = 53.1 bits (126), Expect = 6e-07 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 6/119 (5%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQ--FDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 R ++ K K + + Q+ +D+ Q+A+K+ N+ YG G +A +AE +T G Sbjct: 574 RVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATYGVFGAETFPLYAPAVAESVTALG 633 Query: 277 REILQNTVDLVQNNLNLEVIYGDTDSIMIY----TGLDDISKAKAIAGKVIQEVNKKYR 441 R ++ +TV + L V+YGDTDS+ + L++I K + EV+K Y+ Sbjct: 634 RYVITSTVKKAREE-GLTVLYGDTDSLFLLNPPKNSLENIIKWVKTTFNLDLEVDKTYK 691
>DPOL_RHCM6 (O71121) DNA polymerase (EC 2.7.7.7)| Length = 1035 Score = 53.1 bits (126), Expect = 6e-07 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 22/113 (19%) Frame = +1 Query: 103 RRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +RR V+ +++ +KR D +Q ALK+T N+ YG G N P+A IT GR Sbjct: 656 QRRAVRETMRSCHDPVKRMLLDKEQLALKVTCNAFYGFTGVVNGMMPCLPIAASITRIGR 715 Query: 280 EILQNTVDLVQNN--------------------LNLEVIYGDTDSIMI-YTGL 375 ++L T V+ N + ++VIYGDTDS+ + Y G+ Sbjct: 716 DMLMRTSQFVEENFAEPCFLHNFFNREDYSGDPVAVKVIYGDTDSVFVCYRGV 768
>DPOL_HHV6U (P28857) DNA polymerase (EC 2.7.7.7)| Length = 1012 Score = 52.8 bits (125), Expect = 8e-07 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 22/109 (20%) Frame = +1 Query: 103 RRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +RR VK+ ++ S + + D +Q ALK T NS+YG G ++ +A +T GR Sbjct: 638 KRREVKAEMQNCSDPMMKLLLDKKQLALKTTCNSVYGVTGAAHGLLPCVAIAASVTCLGR 697 Query: 280 EILQNTVDLVQN---------------------NLNLEVIYGDTDSIMI 363 E+L +TVD V + +L +EVIYGDTDSI + Sbjct: 698 EMLCSTVDYVNSKMQSEQFFCEEFGLTSSDFTGDLEVEVIYGDTDSIFM 746
>DPOL_HHV7J (P52342) DNA polymerase (EC 2.7.7.7)| Length = 1012 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 22/110 (20%) Frame = +1 Query: 100 ERRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 ++R+ VK +K + + D +Q ALK T NS+YG G ++S +A +T G Sbjct: 636 DKRKEVKMQMKMCNNPVMEMLLDKKQLALKTTCNSVYGVTGATHSLLPCVAIAASVTCLG 695 Query: 277 REILQNTVDLVQN---------------------NLNLEVIYGDTDSIMI 363 RE+L TVD V + +EVIYGDTDS+ + Sbjct: 696 REMLCKTVDYVDSAMYSDTFFIEKFGLTRGDFSGTFGIEVIYGDTDSLFV 745
>DPOL_EBV (P03198) DNA polymerase (EC 2.7.7.7)| Length = 1015 Score = 50.8 bits (120), Expect = 3e-06 Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 32/116 (27%) Frame = +1 Query: 112 MVKSWLKTASGLK-----------RQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAE 258 ++ SWL +K R D QQ A+K T N++YG G +N F +AE Sbjct: 646 LLTSWLAKRKAIKKLLAACEDPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIAE 705 Query: 259 LITLQGREILQNTVDLVQ----NNL-----------------NLEVIYGDTDSIMI 363 +TLQGR +L+ V+ NL L VIYGDTDS+ I Sbjct: 706 TVTLQGRTMLERAKAFVEALSPANLQALAPSPDAWAPLNPEGQLRVIYGDTDSLFI 761
>DPOL_EHV2 (P52367) DNA polymerase (EC 2.7.7.7)| Length = 1008 Score = 50.8 bits (120), Expect = 3e-06 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 19/107 (17%) Frame = +1 Query: 103 RRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +R+ ++ L T S R D QQ A+K+T N++YG G ++ +AE +T QGR Sbjct: 650 KRKAIRRELATVSDEAVRTILDKQQLAIKVTCNAVYGFTGVASGILPCLKIAETVTFQGR 709 Query: 280 EILQNTVDLVQN------------------NLNLEVIYGDTDSIMIY 366 +L+N+ ++ + + +VIYGDTDS+ I+ Sbjct: 710 RMLENSKRYIEGVTPEGLADILGRRVECAPDASFKVIYGDTDSLFIH 756
>DPOL_EHV1V (Q6S6P1) DNA polymerase (EC 2.7.7.7)| Length = 1220 Score = 49.3 bits (116), Expect = 9e-06 Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 30/189 (15%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ V++ + T++ + D QQ A+K+ NS+YG G +N +A +T GR++ Sbjct: 786 RKAVRARIPTSTPEEAVLLDKQQSAIKVICNSVYGFTGVANGLLPCLRIAATVTTIGRDM 845 Query: 286 LQNTVDLVQNN----------------------LNLEVIYGDTDSIMI------YTGLDD 381 L T D V + ++ VIYGDTDS+ I Y G+ + Sbjct: 846 LLKTRDYVHSRWATRELLEDNFPGAIGFRNHKPYSVRVIYGDTDSVFIKFVGLTYEGVSE 905 Query: 382 ISKA--KAIAGKVIQEVNKKYRCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIER 555 + A + I+ + + ++++ + ++R+ Y + ++G + Sbjct: 906 LGDAMSRQISADLFRAP------IKLECEKTFQRLLLITKKKYIGV---INGG---KMLM 953 Query: 556 KGLDMVRRD 582 KG+D+VR++ Sbjct: 954 KGVDLVRKN 962
>DPOL_EHV1B (P28858) DNA polymerase (EC 2.7.7.7)| Length = 1220 Score = 49.3 bits (116), Expect = 9e-06 Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 30/189 (15%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ V++ + T++ + D QQ A+K+ NS+YG G +N +A +T GR++ Sbjct: 786 RKAVRARIPTSTPEEAVLLDKQQSAIKVICNSVYGFTGVANGLLPCLRIAATVTTIGRDM 845 Query: 286 LQNTVDLVQNN----------------------LNLEVIYGDTDSIMI------YTGLDD 381 L T D V + ++ VIYGDTDS+ I Y G+ + Sbjct: 846 LLKTRDYVHSRWATRELLEDNFPGAIGFRNHKPYSVRVIYGDTDSVFIKFVGLTYEGVSE 905 Query: 382 ISKA--KAIAGKVIQEVNKKYRCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIER 555 + A + I+ + + ++++ + ++R+ Y + ++G + Sbjct: 906 LGDAMSRQISADLFRAP------IKLECEKTFQRLLLITKKKYIGV---INGG---KMLM 953 Query: 556 KGLDMVRRD 582 KG+D+VR++ Sbjct: 954 KGVDLVRKN 962
>DPOL_RCMVM (Q85428) DNA polymerase (EC 2.7.7.7)| Length = 1173 Score = 49.3 bits (116), Expect = 9e-06 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 24/135 (17%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQF-DIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQG 276 ++R++V+ +K K++ F D QQ ALK+T N+ YG G + P+A IT G Sbjct: 714 KQRKLVRDAMKACGDEKQRMFMDKQQLALKVTCNAFYGFTGVAAPMLPCLPIAASITKIG 773 Query: 277 REILQNTVDLVQNNLN----------------------LEVIYGDTDSIMI-YTGLDDIS 387 R++L T ++ + N ++++YGDTDS+ + + G+ Sbjct: 774 RDMLLATSAYMERHCNDVEFLVSEVGVPREAVDRDALRVKIVYGDTDSVFVGFRGIGREV 833 Query: 388 KAKAIAGKVIQEVNK 432 K +AGK+ V + Sbjct: 834 LVK-VAGKLAAAVTR 847
>DPOL_NPVLD (P30318) DNA polymerase (EC 2.7.7.7)| Length = 1014 Score = 49.3 bits (116), Expect = 9e-06 Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 14/109 (12%) Frame = +1 Query: 160 FDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQ--------- 312 +D Q ALK ANS+YG G F KPLA IT GR L+ V V+ Sbjct: 616 YDKIQNALKRIANSIYGYYGI-----FFKPLANYITKMGRGKLKEVVGKVEAMSDDPRIL 670 Query: 313 -----NNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRC 444 + +N VIYGDTDS I D+ A I+ + + + C Sbjct: 671 REFGLSKINFSVIYGDTDSCFIRVLFDEAELAPDRRQTAIRSIVQDHVC 719
>DPOL_TUHV2 (Q9YUS2) DNA polymerase (EC 2.7.7.7)| Length = 1171 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 23/114 (20%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +RR + ++ + +R D +Q ALK+T N+ YG GFS P+A IT GR Sbjct: 771 QRRAVREAMRECEDETRRLLLDKEQLALKVTCNAFYGFTGFSQGMLPCLPVAASITTIGR 830 Query: 280 EILQNTVDLVQNNL-----------------------NLEVIYGDTDSIMIYTG 372 ++L T ++ + + VIYGDTDS+ + G Sbjct: 831 DMLSRTSAYIEAHFAEPAFLARFFEPGDLPRADEPPPTVRVIYGDTDSVFVRFG 884
>DPOL_TUHV1 (Q9YUS3) DNA polymerase (EC 2.7.7.7)| Length = 1171 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 23/114 (20%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +RR + ++ + +R D +Q ALK+T N+ YG GFS P+A IT GR Sbjct: 771 QRRAVREAMRECEDETRRLLLDKEQLALKVTCNAFYGFTGFSQGMLPCLPVAASITTIGR 830 Query: 280 EILQNTVDLVQNNL-----------------------NLEVIYGDTDSIMIYTG 372 ++L T ++ + + VIYGDTDS+ + G Sbjct: 831 DMLSRTSAYIEAHFAEPAFLARFFEPGDLPRADEPPPTVRVIYGDTDSVFVRFG 884
>DPOL_VZVD (P09252) DNA polymerase (EC 2.7.7.7)| Length = 1194 Score = 47.8 bits (112), Expect = 3e-05 Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 25/184 (13%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ +++ + +S + D QQ A+K+ NS+YG G + +A +T GR++ Sbjct: 749 RKAIRARIPGSSSDEAVLLDKQQAAIKVVCNSVYGFTGVAQGFLPCLYVAATVTTIGRQM 808 Query: 286 LQNTVDLVQNN-----------------------LNLEVIYGDTDSIMIYTGLDDISKAK 396 L +T D + NN ++VIYGDTDS+ I + Sbjct: 809 LLSTRDYIHNNWAAFERFITAFPDIESSVLSQKAYEVKVIYGDTDSVFIRFKGVSVEGIA 868 Query: 397 AIAGKVIQEVNKKYRC--LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDM 570 I K+ ++ C ++++ + + ++ Y I V G + KG+D+ Sbjct: 869 KIGEKMAHIISTALFCPPIKLECEKTFIKLLLITKKKY--IGVIYGG----KVLMKGVDL 922 Query: 571 VRRD 582 VR++ Sbjct: 923 VRKN 926
>DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)| Length = 986 Score = 47.4 bits (111), Expect = 3e-05 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 20/113 (17%) Frame = +1 Query: 160 FDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQ--------- 312 +D +Q ++K TANS+YG G F K LA IT GR L+ + L++ Sbjct: 598 YDQKQNSVKRTANSIYGYYGI-----FYKVLANYITRVGRNQLRRAISLIEGLSNDPEIL 652 Query: 313 -----NNLNLEVIYGDTDSIMIYTG------LDDISKAKAIAGKVIQEVNKKY 438 N++ +V+YGDTDS + D+ K I V VN + Sbjct: 653 KKFNLNSIGFKVVYGDTDSTFVLPTFNYNEIFDETDTLKQICTHVETRVNSSF 705
>DPOL_SHV21 (P24907) DNA polymerase (EC 2.7.7.7)| Length = 1009 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 19/106 (17%) Frame = +1 Query: 103 RRRMVKSWLKTASGLKRQQF-DIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +R+ ++ L L + D QQ A+K+T N++YG G ++ +AE +TLQGR Sbjct: 642 KRKAIRQKLAECEDLDTKTILDKQQLAIKVTCNAVYGFTGVASGLLPCISIAETVTLQGR 701 Query: 280 EILQN--------TVDLVQN----------NLNLEVIYGDTDSIMI 363 +L+ T D +Q + VIYGDTDS+ + Sbjct: 702 TMLEKSKIFIEAMTPDTLQEIVPHIVKHEPDAKFRVIYGDTDSLFV 747
>DPOL_HCMVA (P08546) DNA polymerase (EC 2.7.7.7)| Length = 1242 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = +1 Query: 103 RRRMVKSWLKTASG-LKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGR 279 +RR V+ ++ ++R D +Q ALK+T N+ YG G N P+A IT GR Sbjct: 783 QRRAVRECMRECQDPVRRMLLDKEQMALKVTCNAFYGFTGVVNGMMPCLPIAASITRIGR 842 Query: 280 EILQNTVDLVQNNLN 324 ++L+ T +++N + Sbjct: 843 DMLERTARFIKDNFS 857
>DPOL_THEHY (Q9HH05) DNA polymerase (EC 2.7.7.7) [Contains: Endonuclease PI-ThyII| (EC 3.1.-.-) (Thy pol-1 intein); Endonuclease PI-ThyI (EC 3.1.-.-) (Thy pol-2 intein)] (Fragment) Length = 1668 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Frame = +1 Query: 196 NSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIY-----GDTDSIM 360 NS YG G++ +R++ K AE +T GR+ ++ T+ ++ +V+Y G+T+ I+ Sbjct: 995 NSYYGYYGYARARWYCKECAESVTAWGRDYIETTIHEIEERFGFKVLYADSVTGETEIII 1054 Query: 361 IYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDLDGV 468 G + + + +V + +K C+ L+GV Sbjct: 1055 KRNGKVEFVAIEELFQRVDYRIGEKEYCV---LEGV 1087 Score = 36.2 bits (82), Expect = 0.077 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = +1 Query: 331 VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYR-CLEIDLDGVYKRMXXXXXXXYA 507 ++ +TD D K A + ++ +N K LE++ +G Y R YA Sbjct: 1429 ILVHNTDGFFATIPGADAETVKKKAKEFLKYINAKLPGLLELEYEGFYVRGFFVTKKKYA 1488 Query: 508 AIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 I I +GL++VRRDWS ++KE Sbjct: 1489 VIDE------EGKITTRGLEIVRRDWSEIAKE 1514
>DPOL_ASFB7 (P42489) DNA polymerase (EC 2.7.7.7)| Length = 1207 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Frame = +1 Query: 142 GLKRQQF-----DIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDL 306 G K QF D +Q+ALK+ N+ YG G + S FF PLA +T G+ L+ + Sbjct: 612 GFKELQFRHAMVDAKQKALKIFMNTFYGEAGNNLSPFFLLPLAGGVTSSGQYNLKLVYNF 671 Query: 307 VQNNLNLEVIYGDTDSIMI 363 V N + YGDTDS+ I Sbjct: 672 VINK-GYGIKYGDTDSLYI 689
>DPOL_ASFL6 (P43139) DNA polymerase (EC 2.7.7.7)| Length = 1244 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Frame = +1 Query: 142 GLKRQQF-----DIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDL 306 G K QF D +Q+ALK+ N+ YG G + S FF PLA +T G+ L+ + Sbjct: 612 GFKELQFRHAMVDAKQKALKIFMNTFYGEAGNNLSPFFLLPLAGGVTSSGQYNLKLVYNF 671 Query: 307 VQNNLNLEVIYGDTDSIMI 363 V N + YGDTDS+ I Sbjct: 672 VINK-GYGIKYGDTDSLYI 689
>DPOL_HHV1A (P07917) DNA polymerase (EC 2.7.7.7)| Length = 1235 Score = 43.1 bits (100), Expect = 6e-04 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 24/183 (13%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ ++S + +S + D QQ A+K+ NS+YG G + +A +T GRE+ Sbjct: 785 RKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREM 844 Query: 286 LQNTVDLVQ----------------------NNLNLEVIYGDTDSIMIYTGLDDISKAKA 399 L T + V ++ +IYGDTDSI + + A Sbjct: 845 LLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTA 904 Query: 400 IAGKVIQEVNKKYRC--LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMV 573 + K+ +++ ++++ + + ++ Y I V G + KG+D+V Sbjct: 905 VGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY--IGVIYGGKML----IKGVDLV 958 Query: 574 RRD 582 R++ Sbjct: 959 RKN 961
>DPOL_HHV11 (P04293) DNA polymerase (EC 2.7.7.7)| Length = 1235 Score = 43.1 bits (100), Expect = 6e-04 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 24/183 (13%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ ++S + +S + D QQ A+K+ NS+YG G + +A +T GRE+ Sbjct: 785 RKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREM 844 Query: 286 LQNTVDLVQ----------------------NNLNLEVIYGDTDSIMIYTGLDDISKAKA 399 L T + V ++ +IYGDTDSI + + A Sbjct: 845 LLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTA 904 Query: 400 IAGKVIQEVNKKYRC--LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMV 573 + K+ +++ ++++ + + ++ Y I V G + KG+D+V Sbjct: 905 VGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY--IGVIYGGKML----IKGVDLV 958 Query: 574 RRD 582 R++ Sbjct: 959 RKN 961
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 43.1 bits (100), Expect = 6e-04 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 14/82 (17%) Frame = +1 Query: 160 FDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQ--------- 312 +D +Q ++K TANS+YG G F K LA IT GR L+ + L++ Sbjct: 598 YDQKQNSVKRTANSIYGYYG-----IFYKVLANYITRVGRNQLRLAISLIEGLSNDPEIL 652 Query: 313 -----NNLNLEVIYGDTDSIMI 363 ++ +V+YGDTDS + Sbjct: 653 EKFNLGSITFKVVYGDTDSTFV 674
>DPOL_HHV1S (P09854) DNA polymerase (EC 2.7.7.7)| Length = 1235 Score = 42.4 bits (98), Expect = 0.001 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 24/183 (13%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ ++S + +S + D QQ A+K+ NS+YG G + +A +T GRE+ Sbjct: 785 RKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREM 844 Query: 286 LQNTVDLVQ----------------------NNLNLEVIYGDTDSIMIYTGLDDISKAKA 399 L T + V ++ +IYGDTDSI + + A Sbjct: 845 LLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTA 904 Query: 400 IAGKVIQEVNKKYRC--LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMV 573 + K+ +++ ++++ + + ++ Y I V G + KG+D+V Sbjct: 905 MGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY--IGVIYGGKML----IKGVDLV 958 Query: 574 RRD 582 R++ Sbjct: 959 RKN 961
>DPOL_HHV1K (P04292) DNA polymerase (EC 2.7.7.7)| Length = 1235 Score = 42.4 bits (98), Expect = 0.001 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 24/183 (13%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ ++S + +S + D QQ A+K+ NS+YG G + +A +T GRE+ Sbjct: 785 RKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREM 844 Query: 286 LQNTVDLVQ----------------------NNLNLEVIYGDTDSIMIYTGLDDISKAKA 399 L T + V ++ +IYGDTDSI + + A Sbjct: 845 LLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTA 904 Query: 400 IAGKVIQEVNKKYRC--LEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMV 573 + K+ +++ ++++ + + ++ Y I V G + KG+D+V Sbjct: 905 MGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY--IGVIYGGKML----IKGVDLV 958 Query: 574 RRD 582 R++ Sbjct: 959 RKN 961
>DPOL_NPVCF (Q90162) DNA polymerase (EC 2.7.7.7)| Length = 990 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 14/82 (17%) Frame = +1 Query: 160 FDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQ--------- 312 +D Q K TANS+YG G F K LA IT GRE L + +++ Sbjct: 593 YDQMQNLSKRTANSIYGYYGI-----FCKLLANYITRVGREKLTAAIGMIEGLSNDAELL 647 Query: 313 -----NNLNLEVIYGDTDSIMI 363 + L V+YGDTDS + Sbjct: 648 SKFNLSTLTFRVLYGDTDSTFV 669
>DPOL_NPVOP (Q83948) DNA polymerase (EC 2.7.7.7)| Length = 985 Score = 40.8 bits (94), Expect = 0.003 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Frame = +1 Query: 130 KTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLV 309 +T S +D Q K TANS+YG G F K LA IT GRE L + V Sbjct: 584 QTESEFLYDLYDQMQNLSKRTANSIYGYYGI-----FCKLLANHITRVGREKLTAAIGTV 638 Query: 310 Q--------------NNLNLEVIYGDTDSIMI 363 + + L +V+YGDTDS + Sbjct: 639 EGLSNDPDLLREFGLSTLTFKVLYGDTDSTFV 670
>DPOL_MIMIV (Q5UQR0) DNA polymerase (EC 2.7.7.7) [Contains: Mimv polB intein]| Length = 1740 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +1 Query: 172 QQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNL-NLEVIYGDT 348 Q A K+TANS+YG G S + +A T GRE L V++N EVIYGD+ Sbjct: 994 QLAFKVTANSLYGQTGAPTSPLYFIAIAACTTAIGRERLHYAKKTVEDNFPGSEVIYGDS 1053
>DPOL_HHV21 (P07918) DNA polymerase (EC 2.7.7.7)| Length = 1240 Score = 38.1 bits (87), Expect = 0.020 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 22/108 (20%) Frame = +1 Query: 106 RRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREI 285 R+ ++S + + + D QQ A+K+ NS+YG G + +A +T GRE+ Sbjct: 790 RKQIRSRIPQSPPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREM 849 Query: 286 LQNTVDLVQ----------------------NNLNLEVIYGDTDSIMI 363 L T V ++ +IYGDTDSI + Sbjct: 850 LLATRAYVHARWAEFDQLLADFPEAAGMRAPGPYSMRIIYGDTDSIFV 897
>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)| (Seizure-related protein 4) Length = 3122 Score = 37.4 bits (85), Expect = 0.035 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Frame = +1 Query: 106 RRMVKSWLKTASGLKR--QQFDIQQQALKLTANSMYGCLGFSNS-RFFAKPLAELITLQG 276 R MVK +K+ + + + +Q LKL AN +G + S R + + I + Sbjct: 2689 RLMVKQSMKSYKQDRALSRMLNARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKA 2748 Query: 277 REILQNTVDLVQNNLN--LEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKY---- 438 RE L+ + LV + V+YGDTDS+ + L +K ++ K+ QE+ + Sbjct: 2749 RETLERAIKLVNDTKKWGARVVYGDTDSMFVL--LKGATKEQSF--KIGQEIAEAVTATN 2804 Query: 439 -RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 R +++ + VY Y + KG++ VRRD Sbjct: 2805 PRPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKEPVFDAKGIETVRRD 2853
>DPOL_CBEPV (P30319) DNA polymerase (EC 2.7.7.7)| Length = 964 Score = 37.0 bits (84), Expect = 0.045 Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 51/192 (26%) Frame = +1 Query: 184 KLTANSMYGCLGFSNSRFFAKPLAELITLQGR---EILQNTVD---LVQNNLNLE----- 330 K+T NS+YG LG F + AE T G+ + ++N VD + NNL L Sbjct: 668 KITINSLYGLLGSERFDFNSPYCAEYCTALGQKCIKYIKNLVDKSRYIDNNLYLNEQNNP 727 Query: 331 ---------------------VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCL 447 +IYGDTDS+ I D+ K VNK + C Sbjct: 728 FSNEPVITRYSGNLDVNFTFYIIYGDTDSLFINIKFDNKFDNKE------DLVNKSHECF 781 Query: 448 E-------------------IDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDM 570 + + + +Y M Y V+ L+ + KG + Sbjct: 782 QFLSNIINDEKNIILSKNFNFEYEKMYIWMLLLAKKKYIGEVVSSMNPLQLISDSKGTAL 841 Query: 571 VRRDWSLLSKEI 606 +RRD + + K I Sbjct: 842 IRRDCTEIHKTI 853
>DPOLZ_HUMAN (O60673) DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (hREV3)| Length = 3130 Score = 37.0 bits (84), Expect = 0.045 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 20/178 (11%) Frame = +1 Query: 109 RMVKSWLKTASGLKR------------QQFDIQQQALKLTANSMYGCLGFSNS-RFFAKP 249 RM++ LKT +K+ + D +Q LKL AN +G + S R Sbjct: 2688 RMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTSANFSGRMPCIE 2747 Query: 250 LAELITLQGREILQNTVDLVQNNLN--LEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQE 423 + + I + RE L+ + LV + V+YGDTDS+ + L +K ++ K+ QE Sbjct: 2748 VGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVL--LKGATKEQSF--KIGQE 2803 Query: 424 VNKKY-----RCLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDMVRRD 582 + + + +++ + VY Y + KG++ VRRD Sbjct: 2804 IAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRD 2861
>DPOL2_SULSO (Q07635) DNA polymerase 2 (EC 2.7.7.7) (DNA polymerase II) (DNA| polymerase B2) Length = 626 Score = 36.6 bits (83), Expect = 0.059 Identities = 20/80 (25%), Positives = 43/80 (53%) Frame = +1 Query: 124 WLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVD 303 WL ++ + + +A+K + +G LG+ NS F E++T R+ L+ T++ Sbjct: 390 WLIERKSELKKIDEERAEAIKWILVASFGYLGYRNSLFGKIEAYEMVTYLARKTLRRTME 449 Query: 304 LVQNNLNLEVIYGDTDSIMI 363 + + + L V++G DS+++ Sbjct: 450 IAE-EMGLRVLHGIIDSLVV 468
>DPOL_THEG8 (Q9HH84) DNA polymerase (EC 2.7.7.7) [Contains: Endonuclease| PI-TspGE8I (EC 3.1.-.-) (Tsp-GE8 pol-1 intein); Endonuclease PI-TspGE8II (EC 3.1.-.-) (Tsp-GE8 pol-2 intein)] Length = 1699 Score = 35.8 bits (81), Expect = 0.10 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = +1 Query: 331 VIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYR-CLEIDLDGVYKRMXXXXXXXYA 507 ++ +TD D K A + ++ +N K LE++ +G Y R YA Sbjct: 1460 ILVHNTDGFFATIPGADAETVKKKAMEFLKYINAKLPGLLELEYEGFYVRGFFVTKKKYA 1519 Query: 508 AIKVTLDGSLRENIERKGLDMVRRDWSLLSKE 603 I I +GL++VRRDWS ++KE Sbjct: 1520 VIDE------EGKITTRGLEIVRRDWSEIAKE 1545
>DPOL_BPR69 (Q38087) DNA polymerase (EC 2.7.7.7) (Gp43)| Length = 903 Score = 34.7 bits (78), Expect = 0.23 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 10/81 (12%) Frame = +1 Query: 184 KLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLN--------LEVIY 339 KL NS+YG LG R++ A IT G+ LQ V LN V+Y Sbjct: 560 KLLINSLYGALGNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLY 619 Query: 340 GDTDSIMIYTG--LDDISKAK 396 GDTDSI + +D + ++K Sbjct: 620 GDTDSIYVSADKIIDKVGESK 640
>DPOL_THEAG (O33845) DNA polymerase (EC 2.7.7.7) (Pol Tfu) [Contains: Tag pol-1| intein (Tsp-TY pol-1) (Intein I); Tag pol-2 intein (Tsp-TY pol-2) (Intein II); Tag pol-3 intein (Tsp-TY pol-3) (Intein III)] Length = 1829 Score = 34.3 bits (77), Expect = 0.29 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = +1 Query: 394 KAIAGKVIQEVNKKYR-CLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDM 570 K A + ++ +N K LE++ +G Y R YA I I +GL++ Sbjct: 1615 KKKAKEFLKYINSKLPGLLELEYEGFYLRGFFVAKKRYAVIDE------EGRITTRGLEV 1668 Query: 571 VRRDWSLLSKE 603 VRRDWS ++KE Sbjct: 1669 VRRDWSEIAKE 1679
>DPOL_THELI (P30317) DNA polymerase (EC 2.7.7.7) (Vent DNA polymerase) [Contains:| Endonuclease PI-TliII (EC 3.1.-.-) (Tli pol-1 intein) (IVPS2); Endonuclease PI-TliI (EC 3.1.-.-) (Tli pol-2 intein) (IVPS1)] Length = 1702 Score = 33.9 bits (76), Expect = 0.38 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +1 Query: 394 KAIAGKVIQEVNKKYR-CLEIDLDGVYKRMXXXXXXXYAAIKVTLDGSLRENIERKGLDM 570 K A + + +N K LE++ +G Y R YA I I +GL++ Sbjct: 1488 KKKAKEFLNYINSKLPGLLELEYEGFYLRGFFVTKKRYAVIDE------EGRITTRGLEV 1541 Query: 571 VRRDWSLLSKE 603 VRRDWS ++KE Sbjct: 1542 VRRDWSEIAKE 1552
>ARGJ_CHLTE (P59611) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 404 Score = 31.2 bits (69), Expect = 2.5 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +1 Query: 193 ANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTG 372 AN+ G G N+R A+ A+ L E+L + ++ L +E I G S+ +G Sbjct: 84 ANAATGAAGMQNARLMAESTAQAFDLNAGEVLVASTGVIGQQLPVEKIAGAMPSLKATSG 143
>DPOL3_SULSH (O05706) DNA polymerase 3 (EC 2.7.7.7) (DNA polymerase III) (DNA| polymerase B3) Length = 763 Score = 30.8 bits (68), Expect = 3.3 Identities = 26/134 (19%), Positives = 64/134 (47%) Frame = +1 Query: 112 MVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQ 291 + K++L+ S ++ + + + ++ +S Y + + NSR++++ +A + EI + Sbjct: 467 LYKTFLEELSNIQDTR---KSKVIEELMSSFYDYIHWINSRWYSREIASAVDELSYEIGK 523 Query: 292 NTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLEIDLDGVY 471 +DL++N+ EVI + + + G D ++I ++N Y L + + +Y Sbjct: 524 LVIDLIKNS-GFEVILANDFLVFVKGGSGD------KLNELIFKINSLYD-LNLKVRKIY 575 Query: 472 KRMXXXXXXXYAAI 513 + + YA + Sbjct: 576 RSLLILGNDRYAGL 589
>YNZ3_YEAST (P53851) Hypothetical 47.2 kDa Trp-Asp repeats-containing protein| in SIP3-MRPL30 intergenic region Length = 422 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/70 (30%), Positives = 33/70 (47%) Frame = -1 Query: 588 TPITPDHIKSLALNVLS*TTI*CHFNGSILLLFEKQHSFVYTIKINLQTTVLLVHLLNDL 409 TPITP+ I SL +V + +GS+ + F K SF ++++ + L DL Sbjct: 59 TPITPNEILSLKFHVSGSSMAYSRMDGSLTVWFIKDASFDKSVEVYIPDCCGSDKLATDL 118 Query: 408 SSNCFCLGDV 379 S N L + Sbjct: 119 SWNPTSLNQI 128
>PGH2_CHICK (P27607) Prostaglandin G/H synthase 2 precursor (EC 1.14.99.1)| (Cyclooxygenase-2) (COX-2) (Prostaglandin-endoperoxide synthase 2) (Prostaglandin H2 synthase 2) (PGH synthase 2) (PGHS-2) (PHS II) (Mitogen-inducible PGHS) Length = 603 Score = 30.4 bits (67), Expect = 4.2 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Frame = +1 Query: 112 MVKSWLKTASGLKRQQFDIQQQALKLTANSM-------YGCLGFSNSRFFAKPLAELITL 270 MVKS+ K ++G ++ K+ S+ Y L RF KP L Sbjct: 408 MVKSFSKQSAGRVAGGKNVPAAVQKVAKASIDQSRQMRYQSLNEYRKRFMLKPFKSFEEL 467 Query: 271 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTG-LDDISKAKAIAGKVIQEVNKKY 438 G + + LE +YGD D++ +Y G L + + AI G+ + E+ + Sbjct: 468 TGEKEMA---------AELEELYGDIDAMELYPGLLVEKPRPGAIFGETMVEIGAPF 515
>MMSR_PSEAE (P28809) MmsAB operon regulatory protein| Length = 307 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 363 IYWTG*HLQGKSNCWKGHSGGEQEVPL 443 I+WT HL+G S W HS G ++ PL Sbjct: 120 IFWT--HLRGDSATWLQHSAGYRDTPL 144
>DPOL_ICHV1 (P28859) DNA polymerase (EC 2.7.7.7)| Length = 985 Score = 30.0 bits (66), Expect = 5.6 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Frame = +1 Query: 118 KSWLKTASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNT 297 K LK +SG + + Q +K+ N+ YG + S +IT QG+ ++ Sbjct: 727 KRALKQSSGSVAEYHNRLQNEMKICTNTHYGVSEHTCSL--------MITTQGQHKIKLV 778 Query: 298 VDLVQN----NLNLEVIYGDTDSIMIYTGLDD 381 + ++ +L YGDTDS M+Y D+ Sbjct: 779 NEFIKTLNRTGHSLFPNYGDTDSTMLYHPSDE 810
>DPOL_BPT4 (P04415) DNA polymerase (EC 2.7.7.7) (Gp43)| Length = 898 Score = 30.0 bits (66), Expect = 5.6 Identities = 24/81 (29%), Positives = 36/81 (44%) Frame = +1 Query: 184 KLTANSMYGCLGFSNSRFFAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMI 363 K+ NS+YG LG + R++ A IT+ G+ +Q + LN + G D I Sbjct: 557 KILINSLYGALGNIHFRYYDLRNATAITIFGQVGIQWIARKINEYLN--KVCGTNDEDFI 614 Query: 364 YTGLDDISKAKAIAGKVIQEV 426 G D KVI++V Sbjct: 615 AAG--DTDSVYVCVDKVIEKV 633
>BIOH_IDILO (Q5QZC0) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 255 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +1 Query: 238 FAKPLAELITLQGREILQNTVDLVQNNLNLEV----IYGDTDSIMIYTGLDDIS 387 F KP+ + L+ + T DL Q N+EV YG DS++ +DDIS Sbjct: 166 FTKPMPDQGVLKQSLTILQTADLRQQLPNIEVPFNRFYGRLDSLVPERAIDDIS 219
>ABCX_GALSU (P35020) Probable ATP-dependent transporter ycf16| Length = 257 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +1 Query: 286 LQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNK 432 L NT + + N +NL V G+ +IM G + +K IAG + +V K Sbjct: 16 LANTEEYILNGINLNVNQGEIHAIMGPNGSGKSTLSKVIAGHSLYKVVK 64
>DMB_SQUAC (P36964) Proteolipid protein DM beta| Length = 278 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +1 Query: 274 GREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLD 378 G E L TV ++QN N EV+ G D+I ++T +D Sbjct: 47 GHEALSGTVTILQN--NFEVVRGAGDTIDVFTMID 79
>ODPX_YEAST (P16451) Pyruvate dehydrogenase protein X component, mitochondrial| precursor (Dihydrolipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex) (E3-binding protein) (E3BP) Length = 410 Score = 29.6 bits (65), Expect = 7.2 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = +1 Query: 223 SNSRFFAKPLAELITLQGRE-ILQNTVDLVQ--NNLNLEVIYGDTDSIMIYTGLDDISKA 393 +NS++F +L+TL RE + + DL+Q N++ YG D + TG D + + Sbjct: 304 TNSKYFDPIFEDLVTLSPREPRFKFSYDLMQIPKANNMQDTYGQEDIFDLLTGSDATASS 363 Query: 394 KAIAGKVIQEVNKKYRCLEIDLD 462 K + E N+ L + ++ Sbjct: 364 VRPVEKNLPEKNEYILALNVSVN 386
>YMF29_MARPO (P38471) Hypothetical 23.5 kDa protein in COX3-NAD1 intergenic| region (ORF 207) Length = 207 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 100 ERRRMVKSWLKTASGLKRQQFDIQQQALKLTANSMYGCLG 219 + R +K LK + L+R Q LKL N+ YG LG Sbjct: 65 DERNELKGLLKDVNALERSHAKALQNILKLFINTTYGVLG 104
>IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha subunit)| (Serine-rich RNA polymerase I suppressor protein) Length = 542 Score = 29.3 bits (64), Expect = 9.5 Identities = 18/78 (23%), Positives = 36/78 (46%) Frame = +1 Query: 244 KPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQE 423 KPL +L+ + I++ T+D ++N L + + + I D I KA Sbjct: 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG-------- 482 Query: 424 VNKKYRCLEIDLDGVYKR 477 + K + C + + D +Y++ Sbjct: 483 MEKIFNCQQNENDKIYEK 500 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,072,257 Number of Sequences: 219361 Number of extensions: 1448939 Number of successful extensions: 3920 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 3729 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3820 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
