>VGLB_HHV2H (P08666) Glycoprotein B precursor|
          Length = 904

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 410 ATSGPAPASDSGPKAAGGFTAFLDFD----LDPPCTKVPSTTCTVLAATNAPPRTPPMT 246
           A +  APA+ + P+A+GG  A +  +      PP    P+TT      T  PP+ P  T
Sbjct: 18  AVASAAPAAPAAPRASGGVAATVAANGGPASRPPPVPSPATTKARKRKTKKPPKRPEAT 76

>VGLB_HHV23 (P06763) Glycoprotein B precursor|
          Length = 904

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 410 ATSGPAPASDSGPKAAGGFTAFLDFD----LDPPCTKVPSTTCTVLAATNAPPRTPPMT 246
           A +  APA+ + P+A+GG  A +  +      PP    P+TT      T  PP+ P  T
Sbjct: 18  AVASAAPAAPAAPRASGGVAATVAANGGPASRPPPVPSPATTKARKRKTKKPPKRPEAT 76

>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)|
            (p150); RNA-directed RNA polymerase/helicase (EC
            2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 383  DSGPKAAGGFTAFLDFDLDPPCTKVPSTTCTVLAATNAPPRTPPMTCLSGLQSV 222
            + G   A G +AFLD        +VP+    V+A   APP  PP   +   Q V
Sbjct: 1579 EDGSLRAAGLSAFLDAGALAELKEVPAGIDRVVAVEQAPPPLPPADGIPEAQDV 1632

>EMBA_MYCAV (P71485) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1108

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
 Frame = -3

Query: 482  ELGHPPVVTMEGGVRFWLCPELGDA--TSGPAPASDSGPKAAGGFTAFLDFDLDPPCTKV 309
            +L   PVVT  G V     P   +   +     A   GP    G  A L F LDP  T V
Sbjct: 794  DLQSDPVVTKPGLVNSDASPNKPNVAYSDSAGTAGGKGPVGVNGSHAALPFGLDPARTPV 853

Query: 308  PST---TCTVLAATNA----PPRTP--PMTCLSGLQSV 222
              +         AT+A    PPRTP  P+  +S   ++
Sbjct: 854  MGSYGENSLAATATSAWYQLPPRTPDRPLVVVSAAGAI 891

>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)|
            (p150); RNA-directed RNA polymerase/helicase (EC
            2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 383  DSGPKAAGGFTAFLDFDLDPPCTKVPSTTCTVLAATNAPPRTPPMTCLSGLQSV 222
            + G   A G +AFLD        +VP+    V+A   APP  PP   +   Q V
Sbjct: 1580 EDGLLRAAGLSAFLDAGALAELKEVPAGIDRVVAVEQAPPPLPPADGIPEAQDV 1633

>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)|
           (Forkhead-related transcription factor 9) (FREAC-9)
          Length = 497

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 2   SRGXIAAFASQSPGRYACSRRWAPSPGPSS---ATRQIILLPTTIPPFT 139
           SRG  AA  S  PG  A      P PGP S   ATR     P   PP++
Sbjct: 87  SRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAATRS----PLVKPPYS 131

>EMBA_MYCTU (P0A560) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1094

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
 Frame = -3

Query: 482  ELGHPPVVTMEGGVRFWLCPELGDA--TSGPAPASDSGPKAAGGFTAFLDFDLDPPCTKV 309
            +L   PVV+  G V     P   +A  T     A   GP    G  A L F LDP  T V
Sbjct: 780  DLKSDPVVSKPGLVNSDASPNKPNAAITDSAGTAGGKGPVGINGSHAALPFGLDPARTPV 839

Query: 308  PST---TCTVLAATNA----PPRTP--PMTCLSGLQSV 222
              +         AT+A    PPR+P  P+  +S   ++
Sbjct: 840  MGSYGENNLAATATSAWYQLPPRSPDRPLVVVSAAGAI 877

>EMBA_MYCBO (P0A561) Probable arabinosyltransferase A (EC 2.4.2.-)|
          Length = 1094

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
 Frame = -3

Query: 482  ELGHPPVVTMEGGVRFWLCPELGDA--TSGPAPASDSGPKAAGGFTAFLDFDLDPPCTKV 309
            +L   PVV+  G V     P   +A  T     A   GP    G  A L F LDP  T V
Sbjct: 780  DLKSDPVVSKPGLVNSDASPNKPNAAITDSAGTAGGKGPVGINGSHAALPFGLDPARTPV 839

Query: 308  PST---TCTVLAATNA----PPRTP--PMTCLSGLQSV 222
              +         AT+A    PPR+P  P+  +S   ++
Sbjct: 840  MGSYGENNLAATATSAWYQLPPRSPDRPLVVVSAAGAI 877

>US6NL_MOUSE (Q80XC3) USP6 N-terminal-like protein|
          Length = 819

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 94  HPADHPPSYNNPSIYEG 144
           H A +PPSY+NP +Y G
Sbjct: 613 HRAAYPPSYSNPPVYHG 629

>JD2AA_XENLA (Q6IRB8) JmjC domain-containing histone demethylation protein 2A-A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A-A)
          Length = 1331

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 392 PASDSGPKAAGGFTAFLDFDLDPPCTKVPSTTC----TVLAATNAPPRTPPMTCL 240
           P S++GPK+   F AF +     P     S        +L+ T++P   PPMTC+
Sbjct: 437 PKSENGPKSENLFAAFTNSSTVFPKGFEFSVKSFPEQKMLSVTDSPKTAPPMTCV 491


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,539,902
Number of Sequences: 219361
Number of extensions: 2060092
Number of successful extensions: 7012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7001
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)